BAC Information

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BAC

Clone NameB6Ng01-065F24
Chromosome19 (Build37)
Map Location 26,435,149 - 26,436,247
singlet/doubletsinglet
Overlap gene1700048O14Rik
Upstream geneAnkrd15, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065F24.bB6Ng01-065F24.g
ACCDH884869DH884870
length1,1511,080
definitionDH884869|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F24, 5' end.DH884870|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggctgagaagcacctcaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaaccaccctgagat
tccacctcacactaatcaggatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagagagagaaacagtcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcttca
gaaaattggacatagtactactggaggatccagcaatagctctcctgggc
atatatccagatgttccaacaggtaagaaggacacatgctccactatgtt
catagcagctttttttttataatagccagaagctggaaagaacccagatg
tccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggatctggagggcatcatcctatgtgaggtaacccaattacaaaa
gaactcacatgatatgtactcactgataagtggttattagcccagaaagt
tagaatacccaagatataagatacaatttgcaaaacacatgaaactcaag
aagaacgaagaccaaagtatggactctttgccccttcttagaattgggaa
caaaactcccatggaagaagttacagagacaaagtttagagctgaaacgt
aaggatggaccatctagagactgccatgcccggggatccattccataatc
agcctccaaatgctgaaacattgcatacactagcaagatttactgaaagt
acctgatataactatctcttgtggggctatgccgggcctagcaacacaga
agtgatactcacagttagctattggatggatcacaggccaccaatggagg
agctagagaaatacccaggatcttaagggattctgcaccctataggtgga
acaacatatggactacagtaccccccccaaagctcatggtctctagctgc
atatgtatcagaaatgctaatcagcatcattgaagagaggcccttggctt
gcactttatgcttattaggaatgcagggccaaatggagtggtgtatggga
g
gaattcactagatattagaataactcccgagccacttggtgcctaagcca
caagccaggattccagaatgcttaaagcttcagcatttgttacctacaga
gaatgacattcttgatgacaccattttcttgtgacaagaaacaagggagc
agataaataacattaaatatctgtgtgggaagaagtatacacaaaactag
agtattctcttataagactattagaatatatgtgtataataaaacttact
taagatttcagtaatgctagacagagaggttctagagctcttttgcactt
gtgaccctttctttgcctgataaatttttacatgaccccaggtatatatg
tatataaaataggtatacaaatcaaacatttactgataataaatttattt
cagagagtgggagtgatagctcagtggttaagggccctggctgctctggt
tcaatttccagcaaccacatggtgactcacaaccacctgtaatgggatct
gatgcactctactagcattcaggtgtatatgtagagagaacattcatata
aataaatacatatttttaaaaagatacttatttctaaataattctgtaca
acatataattttatcatttattgactaggggacccaaaatccatagtgat
gagataggtatgtttgcttatctttctataaagaattcaatcttaactga
atatttgatactgcagaatttcagtgtttttcaaagatgatggatatctc
aattttatgatcatcagtgctgagaaggctgctttgcatacatatgtagt
acaaatggcagaagtaggttttaggacatttcagaaatcgttgaaaatta
tgtactaatccccagctacgttctttaatgatttaaacttcatttactta
ttgtatatctcatgcggataagtcagaggtgactgatggttctctcctta
tgcgttatgagtcaggatggaactcaggtcatcaaactagtggcaagtgc
cattagttgcatcctgctggtctcatttacagttgcatacaggctgaagc
cttaaaatatagacgcaagaacttggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26435149_26436247
seq2: B6Ng01-065F24.g_68_1147 (reverse)

seq1  CCCTCCCAAGTTCCTGAGCTCTATATTTTAAAGACTCAAGTCCTGTATGC  50
      |||| |||||||| || | |||||||||||| |  |||   |||||||||
seq2  CCCT-CCAAGTTCTTGCG-TCTATATTTTAAGGCTTCA--GCCTGTATGC  46

seq1  AAAACTGTTAAATGAGGACCAGCAAGATGGCACATAATGGCACTTGCCAC  100
        ||||| ||||||| |||||||| ||| |||  ||||||||||||||||
seq2  --AACTG-TAAATGA-GACCAGCAGGAT-GCAACTAATGGCACTTGCCAC  91

seq1  TAGGTCTGATGACCTGAGTTCCATCCCTGACCTCATAACGCATAAGGAGA  150
      || || |||||||||||||||||| ||||| |||||||||||||||||||
seq2  TA-GTTTGATGACCTGAGTTCCAT-CCTGA-CTCATAACGCATAAGGAGA  138

seq1  GAACCCATCAGTCATCCTCTGACTTATCCGCATGGAGATATACAATAAGT  200
      ||| |||||||||| |||||||||||||||||| ||||||||||||||||
seq2  GAA-CCATCAGTCA-CCTCTGACTTATCCGCAT-GAGATATACAATAAGT  185

seq1  AAATGAAGTTTAAAATCATTAAAGGAACGTTAGCTTGGGATTAGTACATA  250
      ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||
seq2  AAATGAAGTTT-AAATCATTAAA-GAACG-TAGCTGGGGATTAGTACATA  232

seq1  ATTTTCAACGATTTCTGAAATGGTCCTAAAACATACTTCTGCCATTTTGT  300
      ||||||||||||||||||||| |||||||||| ||||||||||| |||||
seq2  ATTTTCAACGATTTCTGAAAT-GTCCTAAAACCTACTTCTGCCA-TTTGT  280

seq1  ACTACATATGTATGCAAAGCAGCCTTCTCAGCACTGATGATCATAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATATGTATGCAAAGCAGCCTTCTCAGCACTGATGATCATAAAATT  330

seq1  GAGATATCCATCATCTTTGAAAAACACTGAAATTCTGCAGTATCAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATCCATCATCTTTGAAAAACACTGAAATTCTGCAGTATCAAATAT  380

seq1  TCAGTTAAGATTGAATTCTTTATAGAAAGATAAGCAAACATACCTATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAAGATTGAATTCTTTATAGAAAGATAAGCAAACATACCTATCTC  430

seq1  ATCACTATGGA-TTTGGGTCCCCTAGTCAATAAATGATAAAATTATATGT  499
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATGGATTTTGGGTCCCCTAGTCAATAAATGATAAAATTATATGT  480

seq1  TGTACAGAATTATTTAGAAATAAGTATCTTTTTAAAAATATGTATTTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGAATTATTTAGAAATAAGTATCTTTTTAAAAATATGTATTTATT  530

seq1  TATATGAATGTTCTCTCTACATATACACCTGAATGCTAGTAGAGTGCATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAATGTTCTCTCTACATATACACCTGAATGCTAGTAGAGTGCATC  580

seq1  AGATCCCATTACAGGTGGTTGTGAGTCACCATGTGGTTGCTGGAAATTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCATTACAGGTGGTTGTGAGTCACCATGTGGTTGCTGGAAATTGA  630

seq1  ACCAGAGCAGCCAGGGCCCTTAACCACTGAGCTATCACTCCCACTCTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGCAGCCAGGGCCCTTAACCACTGAGCTATCACTCCCACTCTCTG  680

seq1  AAATAAATTTATTATCAGTAAATGTTTGATTTGTATACCTATTTTATATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTTATTATCAGTAAATGTTTGATTTGTATACCTATTTTATATA  730

seq1  CATATATACCTGGGGTCATGTAAAAATTTATCAGGCAAAGAAAGGGTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATACCTGGGGTCATGTAAAAATTTATCAGGCAAAGAAAGGGTCAC  780

seq1  AAGTGCAAAAGAGCTCTAGAACCTCTCTGTCTAGCATTACTGAAATCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAAAAGAGCTCTAGAACCTCTCTGTCTAGCATTACTGAAATCTTA  830

seq1  AGTAAGTTTTATTATACACATATATTCTAATAGTCTTATAAGAGAATACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTTTATTATACACATATATTCTAATAGTCTTATAAGAGAATACT  880

seq1  CTAGTTTTGTGTATACTTCTTCCCACACAGATATTTAATGTTATTTATCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTGTGTATACTTCTTCCCACACAGATATTTAATGTTATTTATCT  930

seq1  GCTCCCTTGTTTCTTGTCACAAGAAAATGGTGTCATCAAGAATGTCATTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTTGTTTCTTGTCACAAGAAAATGGTGTCATCAAGAATGTCATTC  980

seq1  TCTGTAGGTAACAAATGCTGAAGCTTTAAGCATTCTGGAATCCTGGCTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGTAACAAATGCTGAAGCTTTAAGCATTCTGGAATCCTGGCTTG  1030

seq1  TGGCTTAGGCACCAAGTGGCTCGGGAGTTATTCTAATATCTAGTGAATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGGCACCAAGTGGCTCGGGAGTTATTCTAATATCTAGTGAATTC  1080