BAC Information

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BAC

Clone NameB6Ng01-065H13
Chromosome19 (Build37)
Map Location 37,900,635 - 38,052,069
singlet/doubletdoublet
Overlap geneLOC209281, Fer1l3
Upstream geneTnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251
Downstream geneCep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065H13.bB6Ng01-065H13.g
ACCDH884936DH884937
length1,175998
definitionDH884936|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H13, 5' end.DH884937|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,050,888 - 38,052,069)(37,900,635 - 37,901,631)
sequence
gaattcctaggtatctttggtaattagcctctggtcagtgaaccactctg
cagagacactggttatctgaatctggctatgccaggcttctccacagcct
tattttggagtaaaaagtataaaggactcaaattcaaattagaagaatct
gtcttttgaagattggactagtgagaccaacactggactgtcatagttat
ttctcaggttcaaccattcccttaatcatgggcaaaatccccagccagac
attaatcctttctagcctccattctgttggtgggataaaaacatctgacc
aaaggcaccatagtggaggaaaaggtttatttcatttcacaggttacagt
ccatcactgaaggcagtcacacagggatttaagcaagaactcaaatcaga
aagcacacaggaacacagcttactggctcagtctctggctagtttctagg
ctcacacttagatagcatttttacacagctcaggaatacccgcttaggga
atggtgctgccaacagtgggctgggtcattctatatcaactaacaatcaa
gacaatcctccacagacattctcgtgtgccatttttcatctaggtaattc
ctcaaaggagaccagtgcttctcattttctttgtgctgctgtgacccttt
aatacagttcctcatgttgtagtgaaccgagactcagcatcttctttata
tttgagctatttagttactaaagcaggaatccatacccagcacacaagtg
agtggatatgattcctaggagtgttgttgtagacacaatgggagcccctg
accctgggataagatgaagtctgatttgactttagacttcgctctactcc
acagtcagccttggcttctgagtttcgattccttaaaccgtgaatgcgag
tgctaacgatctcataagggcctttgattggttatgagtttagaagccat
ctgcttcatatcctggggattatagaaatgaacacatggacagcaataag
ttctcgaagagcttagaataaacagactggcttaatttgttttccggtgc
tggaccaataccctaaggttgacttcattgtgaagagaagcctattgggt
catgggtttggaggcgtaggaaactttgtaaccggctatatttcgtctga
atctggggaggaccttctacttcat
gaattcctggagactagaaacaccctgtagctttgaaatagtaaggcggc
gcctaaggcagatgtgccctccacttgacctgcagctagcgctagtgcct
gcccagtgtcccctgattatgtgcccctcacaccttttatacctggctcc
catgactctgcatctggcttgcaataaagtccaaatccctaaagtgacac
gtagagtctgcgatgcagcaggctggctgccgggttggcattcctttgag
aggaagcgccgccgcctgccctgcatctgccccgtggccttgcgtctgat
ctggaaacatggcctccacctgcggaaacgttggcagtctgagatggaaa
ggagctgggagtgtttccgtgggcgcggtgagcgggtctcttgtctggct
tctccttgatgtgccaactgtgaggtggtgcagcaggtgtttccggggat
ggctttgcccacggaaatctttccagcttcgtctgactctcaaccagtgt
tggtccagcgagacggaaaaccttcagagaagggaggagagtaaggccct
tgggccccacactctctgccattctccagttaaggttcaaaaatggtagc
cacaccctacgatagggctcccaaagtatggcccgtattgcactttaaag
tcacacatccactgcacaagctgttcgggctggctgggccaggtgaagaa
caccaatagtctcagcactagggagatagaaacagaagatttaggagttc
aaggccaacgttagctgcatagggaattccaggcaggcttagactacaga
gaaaggtgctgtctcaaacaatattttcacaatgacagactacatatata
cagtagtcccataagaggcccaaggaagcattttctttgggcctagtgtg
cttgtgacaattatggcagaaagttggcaagcccgcccattttagaaaag
ccctagtccatacctcatatatagaaaacttgccaataacggctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38050888_38052069
seq2: B6Ng01-065H13.b_46_1220 (reverse)

seq1  ATGAAGTAGAAGATCCTTACCAGATTCTGAGCAGATATTTATGCTGTGTT  50
      |||||||||||| ||||  |||||||| ||  | ||||    || |  | 
seq2  ATGAAGTAGAAGGTCCTCCCCAGATTCAGACGAAATAT---AGCCGGTTA  47

seq1  CATAGATTTTCTA-GCCT-CAAAACCATGAACCAAATAGGCTTCTACTCT  98
      || || ||| ||| |||| |||| ||||| ||| |||||||||   ||||
seq2  CAAAG-TTTCCTACGCCTCCAAACCCATG-ACCCAATAGGCTT---CTCT  92

seq1  ACA-AATGAAGTCACCCTTAGGTATTTTGTTCCAGCAACAGAAAACAAAT  147
       || |||||||||| |||||||  | ||| ||||||| | ||||||||||
seq2  TCACAATGAAGTCAACCTTAGG-GTATTGGTCCAGCACCGGAAAACAAAT  141

seq1  TAAGCCAGTCTGTATATTCTAAGCTCTTCGAGAAC-TATTGCTGTCCATG  196
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  TAAGCCAGTCTGTTTATTCTAAGCTCTTCGAGAACTTATTGCTGTCCATG  191

seq1  TGTTCATTTCTAT-ATTCCCAGGATATGAAGCAGATGGCTTCTTAAACTC  245
      ||||||||||||| || ||||||||||||||||||||||||| |||||||
seq2  TGTTCATTTCTATAATCCCCAGGATATGAAGCAGATGGCTTC-TAAACTC  240

seq1  ATTAACCAATTCAAAGGCCC-TATGAGATCGTTAGCACTCGCATTCACGG  294
      | ||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  A-TAACCAA-TCAAAGGCCCTTATGAGATCGTTAGCACTCGCATTCACGG  288

seq1  TTTAAGAAATCGAAACTCAGAAGCCAAGGCTGACTGTGGAGTAGAGCGAA  344
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAATCGAAACTCAGAAGCCAAGGCTGACTGTGGAGTAGAGCGAA  338

seq1  GTCTACAGTTCAAATCAGACTTCATCTTATCCCAGGGTCAGGGGCTCCCA  394
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAG-TCAAATCAGACTTCATCTTATCCCAGGGTCAGGGGCTCCCA  387

seq1  TTGTGTCTACAACAACACTCCTAGGAATCATATCCACTCACTTGTGTGCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTACAACAACACTCCTAGGAATCATATCCACTCACTTGTGTGCT  437

seq1  GGGTATGGATTCCTGCTTTAGTAACTAAATAGCTCAAATATAAAGAAGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGGATTCCTGCTTTAGTAACTAAATAGCTCAAATATAAAGAAGAT  487

seq1  GCTGAGTCTCGGTTCACTACAACATGAGGAACTGTATTAAAGGGTCACAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCTCGGTTCACTACAACATGAGGAACTGTATTAAAGGGTCACAG  537

seq1  CAGCACAAAGAAAATGAGAAGCACTGGTCTCCTTTGAGGAATTACCTAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAAAGAAAATGAGAAGCACTGGTCTCCTTTGAGGAATTACCTAGA  587

seq1  TGAAAAATGGCACACGAGAATGTCTGTGGAGGATTGTCTTGATTGTTAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATGGCACACGAGAATGTCTGTGGAGGATTGTCTTGATTGTTAGT  637

seq1  TGATATAGAATGACCCAGCCCACTGTTGGCAGCACCATTCCCTAAGCGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGAATGACCCAGCCCACTGTTGGCAGCACCATTCCCTAAGCGGG  687

seq1  TATTCCTGAGCTGTGTAAAAATGCTATCTAAGTGTGAGCCTAGAAACTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGAGCTGTGTAAAAATGCTATCTAAGTGTGAGCCTAGAAACTAG  737

seq1  CCAGAGACTGAGCCAGTAAGCTGTGTTCCTGTGTGCTTTCTGATTTGAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACTGAGCCAGTAAGCTGTGTTCCTGTGTGCTTTCTGATTTGAGT  787

seq1  TCTTGCTTAAATCCCTGTGTGACTGCCTTCAGTGATGGACTGTAACCTGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTAAATCCCTGTGTGACTGCCTTCAGTGATGGACTGTAACCTGT  837

seq1  GAAATGAAATAAACCTTTTCCTCCACTATGGTGCCTTTGGTCAGATGTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAATAAACCTTTTCCTCCACTATGGTGCCTTTGGTCAGATGTTT  887

seq1  TTATCCCACCAACAGAATGGAGGCTAGAAAGGATTAATGTCTGGCTGGGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCACCAACAGAATGGAGGCTAGAAAGGATTAATGTCTGGCTGGGG  937

seq1  ATTTTGCCCATGATTAAGGGAATGGTTGAACCTGAGAAATAACTATGACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCCATGATTAAGGGAATGGTTGAACCTGAGAAATAACTATGACA  987

seq1  GTCCAGTGTTGGTCTCACTAGTCCAATCTTCAAAAGACAGATTCTTCTAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGTTGGTCTCACTAGTCCAATCTTCAAAAGACAGATTCTTCTAA  1037

seq1  TTTGAATTTGAGTCCTTTATACTTTTTACTCCAAAATAAGGCTGTGGAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTGAGTCCTTTATACTTTTTACTCCAAAATAAGGCTGTGGAGA  1087

seq1  AGCCTGGCATAGCCAGATTCAGATAACCAGTGTCTCTGCAGAGTGGTTCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCATAGCCAGATTCAGATAACCAGTGTCTCTGCAGAGTGGTTCA  1137

seq1  CTGACCAGAGGCTAATTACCAAAGATACCTAGGAATTC  1182
      ||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGAGGCTAATTACCAAAGATACCTAGGAATTC  1175

seq1: chr19_37900635_37901631
seq2: B6Ng01-065H13.g_71_1068

seq1  GAATTCCTGGAGTCTAGAAACACCCTGTAGCTTTGAAATAGTAAGGCGGC  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAGACTAGAAACACCCTGTAGCTTTGAAATAGTAAGGCGGC  50

seq1  GCCTAAGGCAGATGTGCCCTCCACTTGACCTGCAGCTAGCGCTAGTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGGCAGATGTGCCCTCCACTTGACCTGCAGCTAGCGCTAGTGCCT  100

seq1  GCCCAGTGTCCCCTGATTATGTGCCCCTCACACCTTTTATACCTGGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGTCCCCTGATTATGTGCCCCTCACACCTTTTATACCTGGCTCC  150

seq1  CATGACTCTGCATCTGGCTTGCAATAAAGTCCAAATCCCTAAAGTGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTCTGCATCTGGCTTGCAATAAAGTCCAAATCCCTAAAGTGACAC  200

seq1  GTAGAGTCTGCGATGCAGCAGGCTGGCTGCCGGGTTGGCATTCCTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTCTGCGATGCAGCAGGCTGGCTGCCGGGTTGGCATTCCTTTGAG  250

seq1  AGGAAGCGCCGCCGCCTGCCCTGCATCTGCCCCGTGGCCTTGCGTCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCGCCGCCGCCTGCCCTGCATCTGCCCCGTGGCCTTGCGTCTGAT  300

seq1  CTGGAAACATGGCCTCCACCTGCGGAAACGTTGGCAGTCTGAGATGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACATGGCCTCCACCTGCGGAAACGTTGGCAGTCTGAGATGGAAA  350

seq1  GGAGCTGGGAGTGTTTCCGTGGGCGCGGTGAGCGGGTCTCTTGTCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGGAGTGTTTCCGTGGGCGCGGTGAGCGGGTCTCTTGTCTGGCT  400

seq1  TCTCCTTGATGTGCCAACTGTGAGGTGGTGCAGCAGGTGTTTCCGGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGATGTGCCAACTGTGAGGTGGTGCAGCAGGTGTTTCCGGGGAT  450

seq1  GGCTTTGCCCACGG-AATCTTTCCAGCTTCGTCTGACTCTCAACCAGTGT  499
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCCCACGGAAATCTTTCCAGCTTCGTCTGACTCTCAACCAGTGT  500

seq1  TGGTCCAGCGAGACGGAAAACCTTCAGAGAAGGGAGGAGAGTAAGGCCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGCGAGACGGAAAACCTTCAGAGAAGGGAGGAGAGTAAGGCCCT  550

seq1  TGGGCCCCACACTCTCTGCCATTCTCCAGTTAAGGTTC-AAAATGGTAGC  598
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGGCCCCACACTCTCTGCCATTCTCCAGTTAAGGTTCAAAAATGGTAGC  600

seq1  CACACCCTACGATAGGGCTCCCAAAGTATGGCCCGTATTGCAC-TTAAAG  647
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACACCCTACGATAGGGCTCCCAAAGTATGGCCCGTATTGCACTTTAAAG  650

seq1  TCACACATCCACTGCACAGAGCTGTTTCGGGCTGGCTGGGCCAGGTGAAG  697
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  TCACACATCCACTGCACA-AGCTG-TTCGGGCTGGCTGGGCCAGGTGAAG  698

seq1  AACACCAATAGTCTCAGCACTAGGGAGATAGAAACAGAAGAATTAGGAGT  747
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACACCAATAGTCTCAGCACTAGGGAGATAGAAACAGAAGATTTAGGAGT  748

seq1  TCAAGGCCAACGTTAGCTGCATAGTGAATTCCAGGCAAGCCTAGACTACA  797
      |||||||||||||||||||||||| |||||||||||| || |||||||||
seq2  TCAAGGCCAACGTTAGCTGCATAGGGAATTCCAGGCAGGCTTAGACTACA  798

seq1  GAGAAAGGTTCTGTCTCAAACAATATTTTCATCAATGACAGACTACATAT  847
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  GAGAAAGGTGCTGTCTCAAACAATATTTTCA-CAATGACAGACTACATAT  847

seq1  ATACAAGTAGTCCCATAAGAGTCCCAAGG-AGCATTTCCTTT-GGCCTAG  895
      |||| |||||||||||||||| ||||||| ||||||| |||| |||||||
seq2  ATAC-AGTAGTCCCATAAGAGGCCCAAGGAAGCATTTTCTTTGGGCCTAG  896

seq1  TGTTGCTGTGAC-ATTATAGCAGAAAG-TGACAAGCCCGCCCATTTTAGA  943
      |||   |||||| ||||| |||||||| || |||||||||||||||||||
seq2  TGTGCTTGTGACAATTATGGCAGAAAGTTGGCAAGCCCGCCCATTTTAGA  946

seq1  AAAG-CCTAGTCCATACCTACATAGTATAGAAGACTTGGCAATAAACAGC  992
      |||| |||||||||||||| |||| ||||||| ||||| |||| ||| ||
seq2  AAAGCCCTAGTCCATACCT-CATA-TATAGAAAACTTGCCAAT-AACGGC  993

seq1  TCTCT  997
      |||||
seq2  TCTCT  998