BAC Information

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BAC

Clone NameB6Ng01-066G21
Chromosome19 (Build37)
Map Location 53,410,436 - 53,565,521
singlet/doubletdoublet
Overlap geneMxi1, Smndc1
Upstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik
Downstream geneDusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066G21.bB6Ng01-066G21.g
ACCDH885613DH885614
length5231,151
definitionDH885613|Mus musculus domesticus DNA, BAC clone: B6Ng01-066G21, 5' end.DH885614|Mus musculus domesticus DNA, BAC clone: B6Ng01-066G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,410,436 - 53,410,958)(53,564,359 - 53,565,521)
sequence
cagctgctaacatcaaagaaattaaacaccagcaataccaccaccaccag
attttcttgtcgtttagcattctttaaagacaaagattttttttttcgtc
ttcatagagaaggaatgagtgttttctatcttcagctttctctcccttct
gactgtattcaaaagttggtagtttctgagagagtaggaggataatttga
tgtttccctcccttggagatagggtctcattaagtagccctgctcacctg
accctctgcagatcacagtggcctcaaaccttagaggtggctgcttctgc
ctcctgactgctgggattaagggtgcgtggcattatacccagcatgttaa
aaagaaaaaaaatttaatgtatactttgactctatgtacatctgggtacc
acatgtgtgcaatgtccacagaggccagatgagggtgtcagatcctctgg
aactggagccaccatggcacttagttagttagttagttagttagttttaa
gagaatgggagtggggtggggaa
gaattcaccctgacccaaagacgctgaaaggttaaatgcgtgtccctgga
tataagcagtccctgggaaacttcctgggtcctagtgattaaaactaaac
atccaggcgaccctaaatttggacacattgtggggaaggtgaccctgcta
gtcacatgaccttacttacatccagccagtgggtgtttcttcatgggacc
atgagaacattagagtccagtgattgctcttgggccctcccaggcttcct
ggcaggacatctgcctttccttctctatccctttcaatatcacaacagct
tcatccttcccatggtacttccgggtctcccctaattccctacagcagac
aggcagcattgcaaacgacaaatcaaaactcagggctctgggtataacta
gttagtagaattctttcccagtattcgtgagggcctgtgtctgattccca
gcacagaatggattgagcttggtggtgtccacctgcagtctcaatactgg
aaaggtcaagacagaaggatcaggagttcagggtcaccctcagctaccag
tttgaggtcagcctgggctattgtgaaagcccatctcaaaacaccaaatt
aaaacaacaaaagttactcgctcttgaactagtgtgtcccatggcttgga
acaagaccaggatgctcggtgagagttcctaataggaagcagagatgcca
caggtccatgtcagtgcctggcttcccttcctcccccggctccagggtca
gggctgagctatactttgcccttatgaactttggctgcttattgagggcc
aggctcttccctcaaccagatttttagaagaatctcagaaaatgacatct
tctcatagggagtgtggatgacccagactccagtccatgttgtcttagtc
tctttcaggttttcctgtcattctgccacccatggctgccattcctaatg
cagtgtgaatcactcaggcttgccaactgtagtcttaaccagtacacagc
ttagcaaatcccaccaaggccaataatttttgtcaatttttaaacaatta
atcctcagtattcttgaaatcaggatgacatgcttgcaatttgctagata
tttggcaaataaaggtttactatgaatgcctttcaaatgtttttaaaagg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_53410436_53410958
seq2: B6Ng01-066G21.b_61_583

seq1  CAGCTGCTAACATCAAAGAAATTAAACACCAGCAATACCACCACCACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTAACATCAAAGAAATTAAACACCAGCAATACCACCACCACCAG  50

seq1  ATTTTCTTGTCGTTTAGCATTCTTTAAAGACAAAGATTTTTTTTTTCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTGTCGTTTAGCATTCTTTAAAGACAAAGATTTTTTTTTTCGTC  100

seq1  TTCATAGAGAAGGAATGAGTGTTTTCTATCTTCAGCTTTCTCTCCCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAGAAGGAATGAGTGTTTTCTATCTTCAGCTTTCTCTCCCTTCT  150

seq1  GACTGTATTCAAAAGTTGGTAGTTTCTGAGAGAGTAGGAGGATAATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTATTCAAAAGTTGGTAGTTTCTGAGAGAGTAGGAGGATAATTTGA  200

seq1  TGTTTCCCTCCCTTGGAGATAGGGTCTCATTAAGTAGCCCTGCTCACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCTCCCTTGGAGATAGGGTCTCATTAAGTAGCCCTGCTCACCTG  250

seq1  ACCCTCTGCAGATCACAGTGGCCTCAAACCTTAGAGGTGGCTGCTTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTGCAGATCACAGTGGCCTCAAACCTTAGAGGTGGCTGCTTCTGC  300

seq1  CTCCTGACTGCTGGGATTAAGGGTGCGTGGCATTATACCCAGCATGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTGCTGGGATTAAGGGTGCGTGGCATTATACCCAGCATGTTAA  350

seq1  AAAGAAAAAAAATTTAATGTATACTTTGACTCTATGTACATCTGGGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAAATTTAATGTATACTTTGACTCTATGTACATCTGGGTACC  400

seq1  ACATGTGTGCAATGTCCACAGAGGCCAGATGAGGGTGTCAGATCCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGCAATGTCCACAGAGGCCAGATGAGGGTGTCAGATCCTCTGG  450

seq1  AACTGGAGCCACCATGGCACTTAGTTAGTTAGTTAGTTAGTTAGTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGCCACCATGGCACTTAGTTAGTTAGTTAGTTAGTTAGTTTTAA  500

seq1  GAGAATGGGAGTGGGGTGGGGAA  523
      |||||||||||||||||||||||
seq2  GAGAATGGGAGTGGGGTGGGGAA  523

seq1: chr19_53564359_53565521
seq2: B6Ng01-066G21.g_67_1217 (reverse)

seq1  ACCTTTT-AAAACATTTGAAAAGCATTCATAGTAAACATTTTATTTACCA  49
      ||||||| ||||||||||||| |||||||||||||||  ||||||| |||
seq2  ACCTTTTAAAAACATTTGAAAGGCATTCATAGTAAAC-CTTTATTTGCCA  49

seq1  AATACTTAGCAAA-TGCCAGCAATGTGCCAATCCCTGATT--CAGGATAC  96
      ||||  ||||||| ||| ||||   || ||   |||||||   || ||||
seq2  AATATCTAGCAAATTGCAAGCA---TGTCA--TCCTGATTTCAAGAATAC  94

seq1  TGGGGTTATATTGGTTTAAAAATTTGACAAAAA-TATTTGCCCTTGTGTG  145
      || || | || | ||||||||| |||||||||| |||| ||| | ||| |
seq2  TGAGGAT-TAATTGTTTAAAAA-TTGACAAAAATTATTGGCCTTGGTGGG  142

seq1  ATTTATGCTATAGCTGTTGTTACTGGTTTAAGACTACAGTTGGCAAGCCT  195
      |||  ||||| ||||||   |||||| |||||||||||||||||||||||
seq2  ATT--TGCTA-AGCTGT--GTACTGG-TTAAGACTACAGTTGGCAAGCCT  186

seq1  GAGTGATTCACACTGCATTTAGGAATGGCAGCCATGGGGTGGCAGAATGA  245
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  GAGTGATTCACACTGCA-TTAGGAATGGCAGCCAT-GGGTGGCAGAATGA  234

seq1  CAGGAAAACCTGGAAAGAGACTAAGACAACATGGACTGGAGTCTGGGTCA  295
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAACCT-GAAAGAGACTAAGACAACATGGACTGGAGTCTGGGTCA  283

seq1  TCCACACTCCCTATGAGAAGATGTCATTTTCTGAGATTCTTCTAAAAATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTCCCTATGAGAAGATGTCATTTTCTGAGATTCTTCTAAAAATC  333

seq1  TGGTTGAGGGAAGAGCCTGGCCCTCAATAAGCAGCCAAAGTTCATAAGGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGGGAAGAGCCTGGCCCTCAATAAGCAGCCAAAGTTCATAAGGG  383

seq1  CAAAGTATAGCTCAGCCCTGACCCTGGAGCCGGGGGAGGAAGGGAAGCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATAGCTCAGCCCTGACCCTGGAGCCGGGGGAGGAAGGGAAGCCA  433

seq1  GGCACTGACATGGACCTGTGGCATCTCTGCTTCCTATTAGGAACTCTCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGACATGGACCTGTGGCATCTCTGCTTCCTATTAGGAACTCTCAC  483

seq1  CGAGCATCCTGGTCTTGTTCCAAGCCATGGGACACACTAGTTCAAGAGCG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCATCCTGGTCTTGTTCCAAGCCATGGGACACACTAGTTCAAGAGCG  533

seq1  AGTAACTTTTGTTGTTTTAATTTGGTGTTTTGAGATGGGCTTTCACAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTTTGTTGTTTTAATTTGGTGTTTTGAGATGGGCTTTCACAATA  583

seq1  GCCCAGGCTGACCTCAAACTGGTAGCTGAGGGTGACCCTGAACTCCTGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCTGACCTCAAACTGGTAGCTGAGGGTGACCCTGAACTCCTGAT  633

seq1  CCTTCTGTCTTGACCTTTCCAGTATTGAGACTGCAGGTGGACACCACCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTCTTGACCTTTCCAGTATTGAGACTGCAGGTGGACACCACCAA  683

seq1  GCTCAATCCATTCTGTGCTGGGAATCAGACACAGGCCCTCACGAATACTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATCCATTCTGTGCTGGGAATCAGACACAGGCCCTCACGAATACTG  733

seq1  GGAAAGAATTCTACTAACTAGTTATACCCAGAGCCCTGAGTTTTGATTTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAATTCTACTAACTAGTTATACCCAGAGCCCTGAGTTTTGATTTG  783

seq1  TCGTTTGCAATGCTGCCTGTCTGCTGTAGGGAATTAGGGGAGACCCGGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTGCAATGCTGCCTGTCTGCTGTAGGGAATTAGGGGAGACCCGGAA  833

seq1  GTACCATGGGAAGGATGAAGCTGTTGTGATATTGAAAGGGATAGAGAAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATGGGAAGGATGAAGCTGTTGTGATATTGAAAGGGATAGAGAAGG  883

seq1  AAAGGCAGATGTCCTGCCAGGAAGCCTGGGAGGGCCCAAGAGCAATCACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGATGTCCTGCCAGGAAGCCTGGGAGGGCCCAAGAGCAATCACT  933

seq1  GGACTCTAATGTTCTCATGGTCCCATGAAGAAACACCCACTGGCTGGATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTAATGTTCTCATGGTCCCATGAAGAAACACCCACTGGCTGGATG  983

seq1  TAAGTAAGGTCATGTGACTAGCAGGGTCACCTTCCCCACAATGTGTCCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGGTCATGTGACTAGCAGGGTCACCTTCCCCACAATGTGTCCAA  1033

seq1  ATTTAGGGTCGCCTGGATGTTTAGTTTTAATCACTAGGACCCAGGAAGTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGTCGCCTGGATGTTTAGTTTTAATCACTAGGACCCAGGAAGTT  1083

seq1  TCCCAGGGACTGCTTATATCCAGGGACACGCATTTAACCTTTCAGCGTCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGACTGCTTATATCCAGGGACACGCATTTAACCTTTCAGCGTCT  1133

seq1  TTGGGTCAGGGTGAATTC  1163
      ||||||||||||||||||
seq2  TTGGGTCAGGGTGAATTC  1151