BAC Information

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BAC

Clone NameB6Ng01-066N19
Chromosome19 (Build37)
Map Location 9,149,525 - 9,150,675
singlet/doubletsinglet
Overlap geneAhnak
Upstream geneEG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g
Downstream geneScgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066N19.bB6Ng01-066N19.g
ACCDH885919DH885920
length1,1471,031
definitionDH885919|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N19, 5' end.DH885920|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctagatgggcagaggaaaaggttccaccagccagagccggagc
ttgtcttccagaaagagatttcactcagtcctaacagcttgtcaggaaga
gactaaaacccaaataaagatgggttcttggtgggcgggctcacaacttg
acaggaactgcttagctgtgcttgtctttggccctctatctaaactttga
tctcacttttagactctgaagatagggttggaagcagaggtggctggatc
tctctgtccttcccagtgtggccacatggaatgatcgccattctctgctt
tccacttttaatttgactctttcaattggcttattggggatcggtggctg
tacctgacacagacaggctatgaatcccaagttctataacagccacctgg
cttcatcaaaggcccaatggaatggggtgtgtcagatcttggattatctt
ctccaaaacacatggtttcagataagtgtttctccttataaaagaatcat
cctgttatttcattatagtaacagaaatctgaccacacaaagagattgat
ggcacaccctcccccaatctcctgattcactatgaaagagccacaccctg
tgagggacccttcctctggaattttgaaggggtggctgttaatgtcacat
gacagtatgaggataacacactgggtggtccagtgactcaggcaatcact
tccctatgagctctatcatgaggcagtcacgctttctcttgcttttcact
aaaatgacaatccagttgttattgctagagtcagataaaagaagatgaag
agaaataagaactatattgtgcctgtaactccagctactcaggaggcctg
agagacgaggcttgaaattggaggctagcccaggcaacttagtgaatgag
accttatctacaaagggatgggggaggtagctcaatggtagagtgcatga
gtagtgtgtgcaatgccctggggtcagtgtccagtgggtgtgagtgcctg
tacaggccagagaaggtgttgtagctccctaacctggagtgacaggcagt
tgtgatggctgactggatgctaggagcccagtccaatttcctgaaagagc
aaaagaccaggtttagcttcttgagctgccttcagccctgaaagtga
gaattcagagtagaatgtgcccactcctactaagaaatgtaagtaaaggc
tgcattgcactgaaaagagaattaggcatgggaaacttttataatcaagg
aaaaacattcattctagatctgatccaaggataaagtcacaggtgtgcac
tataatgaagtgatgccaggtgaaactgttgctttgaacttgtgatgagc
ttatagaatgaaacactgctttgcatttactatccacacccttctataac
tccctttggtgtaacattttatctatgaggtaattttacacagaaccttt
gtctaagggggtattgattgccattggggctttgatctgtttgtgtcttt
ttttcctgatgtagaattatgtatttcttgtattttcatcagtgttgtta
ccctccttgtgttacagttttccatctaggactgtctgttgggctagttt
agtggggaaagatattgtttaaatttgattttgtcatggaatatctttgt
ttctcaatctatattgaccgttatatcttagagactgtaaaacatctttc
tgggcccttcaggcttcttaagtttcagttgagaagtctggcataattct
aatacatctgcctttttctgttacttgtccattatcccttatgactttta
atattgtttctttgttctgtagatttagtgttttgattaaaatgtggctg
gagaattttcctttttggttcactctatattgtgttctgttagtgttttg
tacatttataggcacctctttctttaggttaggtaaattttcttctacat
ttttttaagatacttttatgggtctttgagttggagtcttctccttcttt
tattcctataatctcatactgatctttcctagtgtcccaatttcctaatt
tgtgttagaacttttagtttcagcatattctttgacagaggtattttttc
tatcatatcttctatgtgcgagaatcttctttgatctcttttattctgtt
ggggatgatgtgccggactccctgttctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9149525_9150675
seq2: B6Ng01-066N19.b_49_1195

seq1  GAATTCTCTAGATGGGCAGAGGAAAAGGTTCCACCAGCCAGAGCCGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGATGGGCAGAGGAAAAGGTTCCACCAGCCAGAGCCGGAGC  50

seq1  TTGTCTTCCAGAAAGAGATTTCACTCAGTCCTAACAGCTTGTCAGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCCAGAAAGAGATTTCACTCAGTCCTAACAGCTTGTCAGGAAGA  100

seq1  GACTAAAACCCAAATAAAGATGGGTTCTTGGTGGGCGGGCTCACAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAACCCAAATAAAGATGGGTTCTTGGTGGGCGGGCTCACAACTTG  150

seq1  ACAGGAACTGCTTAGCTGTGCTTGTCTTTGGCCCTCTATCTAAACTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACTGCTTAGCTGTGCTTGTCTTTGGCCCTCTATCTAAACTTTGA  200

seq1  TCTCACTTTTAGACTCTGAAGATAGGGTTGGAAGCAGAGGTGGCTGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTTTAGACTCTGAAGATAGGGTTGGAAGCAGAGGTGGCTGGATC  250

seq1  TCTCTGTCCTTCCCAGTGTGGCCACATGGAATGATCGCCATTCTCTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCCTTCCCAGTGTGGCCACATGGAATGATCGCCATTCTCTGCTT  300

seq1  TCCACTTTTAATTTGACTCTTTCAATTGGCTTATTGGGGATCGGTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTTAATTTGACTCTTTCAATTGGCTTATTGGGGATCGGTGGCTG  350

seq1  TACCTGACACAGACAGGCTATGAATCCCAAGTTCTATAACAGCCACCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGACACAGACAGGCTATGAATCCCAAGTTCTATAACAGCCACCTGG  400

seq1  CTTCATCAAAGGCCCAATGGAATGGGGTGTGTCAGATCTTGGATTATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCAAAGGCCCAATGGAATGGGGTGTGTCAGATCTTGGATTATCTT  450

seq1  CTCCAAAACACATGGTTTCAGATAAGTGTTTCTCCTTATAAAAGAATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAACACATGGTTTCAGATAAGTGTTTCTCCTTATAAAAGAATCAT  500

seq1  CCTGTTATTTCATTATAGTAACAGAAATCTGACCACACAAAGAGATTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTATTTCATTATAGTAACAGAAATCTGACCACACAAAGAGATTGAT  550

seq1  GGCACACCCTCCCCCAATCTCCTGATTCACTATGAAAGAGCCACACCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACCCTCCCCCAATCTCCTGATTCACTATGAAAGAGCCACACCCTG  600

seq1  TGAGGGACCCTTCCTCTGGAATTTTGAAGGGGTGGCTGTTAATGTCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGACCCTTCCTCTGGAATTTTGAAGGGGTGGCTGTTAATGTCACAT  650

seq1  GACAGTATGAGGATAACACACTGGGTGGTCCAGTGACTCAGGCAATCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTATGAGGATAACACACTGGGTGGTCCAGTGACTCAGGCAATCACT  700

seq1  TCCCTATGAGCTCTATCATGAGGCAGTCACGCTTTCTCTTGCTTTTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATGAGCTCTATCATGAGGCAGTCACGCTTTCTCTTGCTTTTCACT  750

seq1  AAAATGACAATCCAGTTGTTATTGCTAGAGTCAGATAAAAGAAGATGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACAATCCAGTTGTTATTGCTAGAGTCAGATAAAAGAAGATGAAG  800

seq1  AGAAATAAGAACTATATTGTGCCTGTAACTCCAGCTACTCAGGAGGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAGAACTATATTGTGCCTGTAACTCCAGCTACTCAGGAGGCCTG  850

seq1  AGAGACGAGGCTTGAAATTGGAGGCTAGCCCAGGCAACTTAGTGAATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACGAGGCTTGAAATTGGAGGCTAGCCCAGGCAACTTAGTGAATGAG  900

seq1  ACCTTATCTACAAAGGGAT-GGGGAGGTAGCTCAATGGTAGAGTGCATGA  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCTTATCTACAAAGGGATGGGGGAGGTAGCTCAATGGTAGAGTGCATGA  950

seq1  GTAGTGTGTGCAATGCCCTGGGTTCAGTGTCCAGTGGGTGTGAGTGCCTG  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTAGTGTGTGCAATGCCCTGGGGTCAGTGTCCAGTGGGTGTGAGTGCCTG  1000

seq1  TACAGGCCAGAAGAAGGTGTTGGAGCTCCCTAACCTGGAGTGACAGGCAG  1049
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  TACAGGCCAG-AGAAGGTGTTGTAGCTCCCTAACCTGGAGTGACAGGCAG  1049

seq1  TTGTGAATGGCCTGACTTGGATGCTAGGAGCCCAGTTCAGATCCTCTGAA  1099
      ||||| |||| ||||| ||||||||||||||||||| || ||   |||||
seq2  TTGTG-ATGG-CTGAC-TGGATGCTAGGAGCCCAGTCCA-ATTTCCTGAA  1095

seq1  AGAGCAAGA-AGCAGGTTTAGCTTC-TGAGCTGGCTCTCCAGCCCTGAAT  1147
      ||||||| | | ||||||||||||| |||||||   || |||||||||| 
seq2  AGAGCAAAAGACCAGGTTTAGCTTCTTGAGCTG--CCTTCAGCCCTGAAA  1143

seq1  GTGA  1151
      ||||
seq2  GTGA  1147