BAC Information

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BAC

Clone NameB6Ng01-067M16
Chromosome19 (Build37)
Map Location 17,690,149 - 17,735,954
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067M16.bB6Ng01-067M16.g
ACCDH886568DH886569
length1,1691,109
definitionDH886568|Mus musculus domesticus DNA, BAC clone: B6Ng01-067M16, 5' end.DH886569|Mus musculus domesticus DNA, BAC clone: B6Ng01-067M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,690,149 - 17,691,344)(17,734,833 - 17,735,954)
sequence
gaattcatcttattatgatcatgtttagatgaattatgggggcttgccat
caacaaaattacaaaacaattcctgtgggaacccagaccattttgagtaa
ttcatctatgaacaaatgaactttaattgttactcttggcagccacctaa
gagaagagtgaaatattatactaaatattgccacgtgcaacagtaaaata
caatttcctccttgccagaagcagggtacggtcccttgaaattcatgttt
gggtctgctgatttcgtttaaatcccctgtcttcccctccaaaaccaaca
gaggtcttccaaagagctgcttgttttattagaaccatttgcacttttta
agtcgccaaaaaggagtaagtcagactaagaagtttgtttgggttaaagt
tgatgcttcagcttcacggaggtcaatggacttagtgtgtgagccctctg
ctaagatggcccttgcagcctaggttaatgttggtcccttcccctgccat
gcaggtcatggatttatctagtaagatttaacagcaggctgatgctaatc
aacgggaaacatacataagacaaacttacatttctttttttattgttgtt
tatttgttttgtttttgttttgtgtttattggaagaagtgaaatgtcaaa
gaattttaacattgcccatgcaactacaattctgagattgcacattgtct
tctcagagcaggacagcaatgagcgtttacagctttttttttttttttcc
aggggaaacagcataccaatatatgactctgggtagtttgcagccaagaa
aaggatcactcttcaagagcagaaggcatggatggatcatgtaaaaacat
ccaataactggttatatgtgtgcatccttgacaggttcatagatcatgat
taagggtgaaattatcatgagctatcctaaaagaattttagaagatatac
atttgggctaagtatttgcatataactggacatagttccctatggaatat
ttaagcttctagtatgatatcatgtagatggtatcaaatccatatattta
aatcggagcatagggacttaaatgatggcttcctcaggaatatcgtctgt
ccagggtctgagtgcgaattcccactgatactattcttatgagtgaactg
ttttccttagaggggatat
gaattccatactgccagcccatggactagcactcaaacaatgttgtaaaa
tggtattaagtgttggctggttacacagggtctttaaatatctgccagtc
agcttaaaatatatttaaccataaaaataaaattcatttttagtagaaat
gcttgttccaatgaccagcaaccgactccataacccttattgggctctct
aagcctttaaaaactaagctgactgcattgggtatgctcagtgagcatat
aaaattcatttttatttgtgtgtggttgtataaaattaatacggttgcta
ataactgcatctaatttttcagtgttttattaaaaagtcaaagaacgtta
agaaatggatttaaatacttggtttagtagtctagtgtgtgcacagaaag
gcagaatgcagaggagccaggtcagagctgagaagatgggcagttgagat
ggctgggatgaagggactgagcttggagctcacaggaattcagagctagg
gaccagcagtgcttgctcacaggctccttctttcctgagcactcagtgca
tttctttccccaggggaactggaaactaattgccattacaatccaagttg
ttcctactcagcatcctttgatggtgtgggatggaaacaaataagaacat
agcatagattaccgttgctgagtcaggttcaactgggtcccgtgcaggca
gccctcacagcaaacacgtgagacagatatttcaaatgtgggacttggag
tggggagagctgggctggggagatggtgcatatggctgtttgttgatttt
aatcttaagatgtttgactcaagatctgaacaagaggattactcatcttt
tgctgccatttaatcaccaaacaaataaacttgaactaatgacatttaaa
aaaaatacatgaagtagcttttctatttactgttattctagggagtaggg
gcagcatcactgagagcatatgttctttaggtgagtgtgccacgtggcag
atattataaaatggagtcttacaatgaccatttctaggagacatgctgag
cttgaaagctagcacttggcatgacatattcttgaaagcagcatgcaccc
cagactcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17690149_17691344
seq2: B6Ng01-067M16.b_47_1215

seq1  GAATTCATCTTATTATGATCATGTTTAGATGAATTATGGGGGCTTGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTATTATGATCATGTTTAGATGAATTATGGGGGCTTGCCAT  50

seq1  CAACAAAATTACAAAACAATTCCTGTGGGAACCCAGACCATTTTGAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAATTACAAAACAATTCCTGTGGGAACCCAGACCATTTTGAGTAA  100

seq1  TTCATCTATGAACAAATGAACTTTAATTGTTACTCTTGGCAGCCACCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTATGAACAAATGAACTTTAATTGTTACTCTTGGCAGCCACCTAA  150

seq1  GAGAAGAGTGAAATATTATACTAAATATTGCCACGTGCAACAGTAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGTGAAATATTATACTAAATATTGCCACGTGCAACAGTAAAATA  200

seq1  CAATTTCCTCCTTGCCAGAAGCAGGGTACGGTCCCTTGAAATTCATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCTCCTTGCCAGAAGCAGGGTACGGTCCCTTGAAATTCATGTTT  250

seq1  GGGTCTGCTGATTTCGTTTAAATCCCCTGTCTTCCCCTCCAAAACCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGCTGATTTCGTTTAAATCCCCTGTCTTCCCCTCCAAAACCAACA  300

seq1  GAGGTCTTCCAAAGAGCTGCTTGTTTTATTAGAACCATTTGCACTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTCCAAAGAGCTGCTTGTTTTATTAGAACCATTTGCACTTTTTA  350

seq1  AGTCGCCAAAAAGGAGTAAGTCAGACTAAGAAGTTTGTTTGGGTTAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCCAAAAAGGAGTAAGTCAGACTAAGAAGTTTGTTTGGGTTAAAGT  400

seq1  TGATGCTTCAGCTTCACGGAGGTCAATGGACTTAGTGTGTGAGCCCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTCAGCTTCACGGAGGTCAATGGACTTAGTGTGTGAGCCCTCTG  450

seq1  CTAAGATGGCCCTTGCAGCCTAGGTTAATGTTGGTCCCTTCCCCTGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGGCCCTTGCAGCCTAGGTTAATGTTGGTCCCTTCCCCTGCCAT  500

seq1  GCAGGTCATGGATTTATCTAGTAAGATTTAACAGCAGGCTGATGCTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCATGGATTTATCTAGTAAGATTTAACAGCAGGCTGATGCTAATC  550

seq1  AACGGGAAACATACATAAGACAAACTTACATTTCTTTTTTTATTGTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGAAACATACATAAGACAAACTTACATTTCTTTTTTTATTGTTGTT  600

seq1  TATTTGTTTTGTTTTTGTTTTGTGTTTATTGGAAGAAGTGAAATGTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTTGTTTTTGTTTTGTGTTTATTGGAAGAAGTGAAATGTCAAA  650

seq1  GAATTTTAACATTGCCCATGCAACTACAATTCTGAGATTGCACATTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAACATTGCCCATGCAACTACAATTCTGAGATTGCACATTGTCT  700

seq1  TCTCAGAGCAGGACAGCAATGAGCGTTTACAGCTTTTTTTTTTTTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGCAGGACAGCAATGAGCGTTTACAGCTTTTTTTTTTTTTTTCC  750

seq1  AGGGGAAACAGCATACCAATATATGACTCTGGGTAGTTTGCAGCCAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAACAGCATACCAATATATGACTCTGGGTAGTTTGCAGCCAAGAA  800

seq1  AAGGATCACTCTTCAAGAGCAGAAGGCATGGAATGGATCATGTAAAAACA  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGGATCACTCTTCAAGAGCAGAAGGCATGG-ATGGATCATGTAAAAACA  849

seq1  TCCAATAACTGGTTATATGTGTGCATCCTTGACAGGTTCATAGATCATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAACTGGTTATATGTGTGCATCCTTGACAGGTTCATAGATCATGA  899

seq1  TTAAGGGTGAAATTATCATGAGCTATCCTAAAAGAATTTTTAAAGGATAT  950
      |||||||||||||||||||||||||||||||||||| ||||| | |||||
seq2  TTAAGGGTGAAATTATCATGAGCTATCCTAAAAGAA-TTTTAGAAGATAT  948

seq1  ACATTTTGGCCTAAGTATTTGCATAT-ACTGGACATAGTTCCCTATGGAT  999
      ||| ||||| |||||||||||||||| |||||||||||||||||||||| 
seq2  ACA-TTTGGGCTAAGTATTTGCATATAACTGGACATAGTTCCCTATGGA-  996

seq1  ATA-TTAAGCTTCTAAGTATGATATCATGTAGATGGTATTCAGATTCCAT  1048
      ||| |||||||||| ||||||||||||||||||||||| ||| | |||||
seq2  ATATTTAAGCTTCT-AGTATGATATCATGTAGATGGTA-TCA-AATCCAT  1043

seq1  AATATTTAAATCTGGAGCAATTAGGGATCTTAAAATGAATGGCTTCCTCA  1098
       ||||||||||| ||||||  |||||| ||| ||||| ||||||||||||
seq2  -ATATTTAAATC-GGAGCA--TAGGGA-CTT-AAATG-ATGGCTTCCTCA  1086

seq1  GGATTATTCGTCATGTTTCCAGTGGTCTGAGTGCCAGAATCACCACTGAT  1148
      ||| || |||||   | ||||| |||||||||||  ||||  ||||||| 
seq2  GGAATA-TCGTC---TGTCCAG-GGTCTGAGTGC--GAATTCCCACTGA-  1128

seq1  TACATATTCCTTACATGAGTGAACACTGTTTCCCCTAGAGGGGGATAT  1196
      ||| ||||| |   ||||||||  ||||||| || |||| ||||||||
seq2  TAC-TATTCTT---ATGAGTGA--ACTGTTTTCCTTAGA-GGGGATAT  1169

seq1: chr19_17734833_17735954
seq2: B6Ng01-067M16.g_69_1177 (reverse)

seq1  AGGAGTCTGGGGGGTGCATGCTGCTTTTCAAGAATAATGCTATGCCAAGG  50
      ||||||||  |||||||||||||| |||||||||| |||  ||||||| |
seq2  AGGAGTCT--GGGGTGCATGCTGC-TTTCAAGAAT-ATGTCATGCCAA-G  45

seq1  TGCTTGGCTTTCATGCTACAGCATTGTCTCCTAGAAAATGGTCATGTTAA  100
      ||| | ||||||| ||| ||||| |||||||||| ||||||||||  |||
seq2  TGC-TAGCTTTCAAGCT-CAGCA-TGTCTCCTAG-AAATGGTCATTGTAA  91

seq1  GACTCCATTTTATAATATCTGCCACTGTTGGCACATCTCACCTAAAGAAC  150
      |||||||||||||||||||||||||   ||||||| ||||||||||||||
seq2  GACTCCATTTTATAATATCTGCCAC--GTGGCACA-CTCACCTAAAGAAC  138

seq1  ATATGCTCTCAGTTGATGCTGCTCCTACT-CCTAGAATAACAGTAAATAG  199
      |||||||||||| ||||||||| |||||| ||||||||||||||||||||
seq2  ATATGCTCTCAG-TGATGCTGCCCCTACTCCCTAGAATAACAGTAAATAG  187

seq1  AAGAGCTACTTCATGTATTTTTTTTTAAATGTCATTAGTTCAAGTTTATT  249
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAGCTACTTCATGTA-TTTTTTTTAAATGTCATTAGTTCAAGTTTATT  236

seq1  TGTTTGGTGATTAAATGGCAGCAAAAGATGAGTAATCCTCTTGTTCAGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTGATTAAATGGCAGCAAAAGATGAGTAATCCTCTTGTTCAGAT  286

seq1  CTTGAGTCAAACATCTTAAGATTAAAATCAACAAACAGCCATATGCACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTCAAACATCTTAAGATTAAAATCAACAAACAGCCATATGCACCA  336

seq1  TCTCCCCAGCCCAGCTCTCCCCACTCCAAGTCCCACATTTGAAATATCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGCCCAGCTCTCCCCACTCCAAGTCCCACATTTGAAATATCTG  386

seq1  TCTCACGTGTTTGCTGTGAGGGCTGCCTGCACGGGACCCAGTTGAACCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGTGTTTGCTGTGAGGGCTGCCTGCACGGGACCCAGTTGAACCTG  436

seq1  ACTCAGCAACGGTAATCTATGCTATGTTCTTATTTGTTTCCATCCCACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAACGGTAATCTATGCTATGTTCTTATTTGTTTCCATCCCACAC  486

seq1  CATCAAAGGATGCTGAGTAGGAACAACTTGGATTGTAATGGCAATTAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGGATGCTGAGTAGGAACAACTTGGATTGTAATGGCAATTAGTT  536

seq1  TCCAGTTCCCCTGGGGAAAGAAATGCACTGAGTGCTCAGGAAAGAAGGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCCCCTGGGGAAAGAAATGCACTGAGTGCTCAGGAAAGAAGGAG  586

seq1  CCTGTGAGCAAGCACTGCTGGTCCCTAGCTCTGAATTCCTGTGAGCTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGCAAGCACTGCTGGTCCCTAGCTCTGAATTCCTGTGAGCTCCA  636

seq1  AGCTCAGTCCCTTCATCCCAGCCATCTCAACTGCCCATCTTCTCAGCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTCCCTTCATCCCAGCCATCTCAACTGCCCATCTTCTCAGCTCT  686

seq1  GACCTGGCTCCTCTGCATTCTGCCTTTCTGTGCACACACTAGACTACTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGCTCCTCTGCATTCTGCCTTTCTGTGCACACACTAGACTACTAA  736

seq1  ACCAAGTATTTAAATCCATTTCTTAACGTTCTTTGACTTTTTAATAAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTATTTAAATCCATTTCTTAACGTTCTTTGACTTTTTAATAAAAC  786

seq1  ACTGAAAAATTAGATGCAGTTATTAGCAACCGTATTAATTTTATACAACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAATTAGATGCAGTTATTAGCAACCGTATTAATTTTATACAACC  836

seq1  ACACACAAATAAAAATGAATTTTATATGCTCACTGAGCATACCCAATGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAATAAAAATGAATTTTATATGCTCACTGAGCATACCCAATGCA  886

seq1  GTCAGCTTAGTTTTTAAAGGCTTAGAGAGCCCAATAAGGGTTATGGAGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTAGTTTTTAAAGGCTTAGAGAGCCCAATAAGGGTTATGGAGTC  936

seq1  GGTTGCTGGTCATTGGAACAAGCATTTCTACTAAAAATGAATTTTATTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGTCATTGGAACAAGCATTTCTACTAAAAATGAATTTTATTTT  986

seq1  TATGGTTAAATATATTTTAAGCTGACTGGCAGATATTTAAAGACCCTGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTAAATATATTTTAAGCTGACTGGCAGATATTTAAAGACCCTGTG  1036

seq1  TAACCAGCCAACACTTAATACCATTTTACAACATTGTTTGAGTGCTAGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGCCAACACTTAATACCATTTTACAACATTGTTTGAGTGCTAGTC  1086

seq1  CATGGGCTGGCAGTATGGAATTC  1122
      |||||||||||||||||||||||
seq2  CATGGGCTGGCAGTATGGAATTC  1109