BAC Information

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BAC

Clone NameB6Ng01-067P18
Chromosome19 (Build37)
Map Location 11,159,220 - 11,220,352
singlet/doubletdoublet
Overlap geneGm336, LOC624395, 1700025F22Rik
Upstream geneFads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a
Downstream geneMs4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067P18.bB6Ng01-067P18.g
ACCDH886706DH886707
length1,2561,113
definitionDH886706|Mus musculus domesticus DNA, BAC clone: B6Ng01-067P18, 5' end.DH886707|Mus musculus domesticus DNA, BAC clone: B6Ng01-067P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,159,220 - 11,160,495)(11,219,230 - 11,220,352)
sequence
gaattcatccacttgtattacaaaatccctgtacattaaaaataaagttt
gttcatggaaaaatgaaaagaaaatattgtttaataccttttattctgtt
atactatctggaatgcagtgaggtacaatacagcggttatatgaaatacg
agacatccacttctgtggtttatgctttaaagcccatgatggaaacctgg
cctgccatatgaatttgcaaataaaattttattggaatacagcctcacat
actgttactacagcttagtgatatctgaattcatgttgacacaacggagt
tgaaaagttacaatagaaagcacataagctgtagggtcacaaatatttcc
tacttggccctttttggaaagaatgatggttgctggtacagaagttagaa
tgtcatctcagttgacatagcatgtaccagaagcaactggccataagaca
aagctcagcaagctctgtgtaagaaatgaggagggccaccttattaaacc
aatgattaccataaacagctttgaagagcaacagagtccagccaggaaag
ggcgagtttcagattctactttgagtttactatatgatttttggccagtt
ataagtatttcttttaagccaggaaacaccatcatgtataagagatattt
ttaaagtttggcatgaaaaatttatttattttcttatatccattcatatt
gttatccaagagaagacatttaagctagataaaaaaaaattgaatcattt
ttcccaaaatggaaaaatataaatctaaaaatcacagctcccccccccat
aggtaggttttcaaggaatggggggaaaatcaatgttttattaaaagaca
aaatggaaaatgttctaactatcccagagatagccaaatggtcaagcttt
ctcaatgtgcccagagcatgaacctatcaagtctgtcaagtgcaacagac
cattgcagtctacctagtaagccttagctacagactgctctacaccagaa
ttctctgagtcttccattagtgttctgcagcacagctacgtctccctaac
tacaatactcatagacccgaaatgctggaaattctagagcttagtttctt
ctatgattattatatggactatatacatgagtttggacccctgccttgga
atttaaaatgtgcattctatcaaatcggcttcccaaaggaaccggtgtct
atccatgatccagtaggacaaactcattatttggctcttcagcattaaga
gatatg
gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacattatttcttt
tttataacaataatttactttaattcttagaacaaagagcactgcctagt
agggctgccttgtcaggcctcagtgagaaaggaggaccactatttcttaa
agctttccaaacctaaacttcaaactaagaaagcagggccagggatacgg
ctcactttctgggcaaacgaaaggacctgaattcagatcccacatctgtg
gtgcattgtcttgattactaattgatgtaaaaggatgcagcctactgagg
gtggtgccatgcctaggcaagtgtgtccgggctgtgtaagaaagctagct
gagcaagccagagggagcaagccagtaagtgatgtttctccatggttcct
gcctcaatgtttctacttcgagttctatcttgagtttcctctataatgga
ctgtaaactgatataaaccctttctttccctaaattgcttttggtcatgg
tattcatcacagcaacagaaagcaatctgaaacagtcagtaacagtgtac
atgtgcactatgccaaaaaattcatttaacaggacatcagagttgttatt
taaagtagtgagtcaaggggggaaaagatacaaagagctttgagactaga
gagtccgactatgtgcttcatccacagccatcagaaacatgctaagacat
cctacaacatccaaagaagtctagatccatcaaaaaatccagaataaatt
agtaagatttatcagtgttacagaacataagtttcctgtaagggaaaaaa
attaactgggtgtctgtgtaatttgttacacttacctagtaagggaattc
acattgttctgaatattgaacccttgcaataaagctgctatgaataccaa
taagtcttgatacagaaatattccttgttcctcttatatatggatacttt
tcattttctaagaaactacccaagtatttcaaagtatttaatgctattgc
atttctgttttcacccacaccccacaaatagagcaacagtgttctttgtt
gttgtatcagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11159220_11160495
seq2: B6Ng01-067P18.b_49_1304

seq1  GAATTCATCCACTTGTATTACAAAATCCCTGTACATTAAAAATAAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCACTTGTATTACAAAATCCCTGTACATTAAAAATAAAGTTT  50

seq1  GTTCATGGAAAAATGAAAAGAAAATATTGTTTAATACCTTTTATTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGGAAAAATGAAAAGAAAATATTGTTTAATACCTTTTATTCTGTT  100

seq1  ATACTATCTGGAATGCAGTGAGGTACAATACAGCGGTTATATGAAATACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCTGGAATGCAGTGAGGTACAATACAGCGGTTATATGAAATACG  150

seq1  AGACATCCACTTCTGTGGTTTATGCTTTAAAGCCCATGATGGAAACCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCCACTTCTGTGGTTTATGCTTTAAAGCCCATGATGGAAACCTGG  200

seq1  CCTGCCATATGAATTTGCAAATAAAATTTTATTGGAATACAGCCTCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATATGAATTTGCAAATAAAATTTTATTGGAATACAGCCTCACAT  250

seq1  ACTGTTACTACAGCTTAGTGATATCTGAATTCATGTTGACACAACGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTACTACAGCTTAGTGATATCTGAATTCATGTTGACACAACGGAGT  300

seq1  TGAAAAGTTACAATAGAAAGCACATAAGCTGTAGGGTCACAAATATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTACAATAGAAAGCACATAAGCTGTAGGGTCACAAATATTTCC  350

seq1  TACTTGGCCCTTTTTGGAAAGAATGATGGTTGCTGGTACAGAAGTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGCCCTTTTTGGAAAGAATGATGGTTGCTGGTACAGAAGTTAGAA  400

seq1  TGTCATCTCAGTTGACATAGCATGTACCAGAAGCAACTGGCCATAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTCAGTTGACATAGCATGTACCAGAAGCAACTGGCCATAAGACA  450

seq1  AAGCTCAGCAAGCTCTGTGTAAGAAATGAGGAGGGCCACCTTATTAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGCAAGCTCTGTGTAAGAAATGAGGAGGGCCACCTTATTAAACC  500

seq1  AATGATTACCATAAACAGCTTTGAAGAGCAACAGAGTCCAGCCAGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTACCATAAACAGCTTTGAAGAGCAACAGAGTCCAGCCAGGAAAG  550

seq1  GGCGAGTTTCAGATTCTACTTTGAGTTTACTATATGATTTTTGGCCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGTTTCAGATTCTACTTTGAGTTTACTATATGATTTTTGGCCAGTT  600

seq1  ATAAGTATTTCTTTTAAGCCAGGAAACACCATCATGTATAAGAGATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTATTTCTTTTAAGCCAGGAAACACCATCATGTATAAGAGATATTT  650

seq1  TTAAAGTTTGGCATGAAAAATTTATTTATTTTCTTATATCCATTCATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTGGCATGAAAAATTTATTTATTTTCTTATATCCATTCATATT  700

seq1  GTTATCCAAGAGAAGACATTTAAGCTAGATAAAAAAAAATTGAATCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCAAGAGAAGACATTTAAGCTAGATAAAAAAAAATTGAATCATTT  750

seq1  TTCCCAAAATGGAAAAATATAAATCTAAAAATCACAGCTCCCCCCCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAATGGAAAAATATAAATCTAAAAATCACAGCTCCCCCCCCCAT  800

seq1  AGGTAGGTTTTCAAGGAATGGGGGGAAAATCAATGTTTTATTAAAAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTTTTCAAGGAATGGGGGGAAAATCAATGTTTTATTAAAAGACA  850

seq1  AAATGGAAAATGTTCTAACTATCCCAGAGATAGCCAAAATGGTCAAGCTT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATGGAAAATGTTCTAACTATCCCAGAGATAGCC-AAATGGTCAAGCTT  899

seq1  TCTCAATGTGCCCAGAGCATGAACCTATCAAGTCTGTCAAGTGCAACAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGTGCCCAGAGCATGAACCTATCAAGTCTGTCAAGTGCAACAGA  949

seq1  CCATTGCAGTCTACCTAGTAAGCCTTAGCTACAGACTGCTCTACACCAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCATTGCAGTCTACCTAGTAAGCCTTAGCTACAGACTGCTCTACACC-AG  998

seq1  AATTCTCTGAGTCTTCCATTAGTGTTCTGCAGCCACAGCTACGTCTCCCT  1050
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATTCTCTGAGTCTTCCATTAGTGTTCTGCAG-CACAGCTACGTCTCCCT  1047

seq1  AACTACCAATAACTCATAGACACGAAATGCTGGAAAATACTAGAGCTTAT  1100
      ||||| |||| |||||||||| ||||||||||| |||| |||||||||| 
seq2  AACTA-CAAT-ACTCATAGACCCGAAATGCTGG-AAATTCTAGAGCTTA-  1093

seq1  GTTTCTTCTAATGATTTATTATATGAACTTATATACATGAGTATGGACCC  1150
      ||||||||| |||| |||||||||| || ||||||||||||| |||||||
seq2  GTTTCTTCT-ATGA-TTATTATATGGAC-TATATACATGAGTTTGGACCC  1140

seq1  CTGCTTTGGATATTTAAATATGCATTCTATTCAAAATCTGCTTCTCAAAG  1200
      |||| |||||  || |||| ||||||||||   ||||| ||||| |||||
seq2  CTGCCTTGGAATTTAAAATGTGCATTCTAT--CAAATCGGCTTCCCAAAG  1188

seq1  GACACGTGGTTCATATACCTAGTACTGATAGGACCAATACTCAAATTATA  1250
      ||  |  |||   ||| | |  | | | ||||||  | |||||     ||
seq2  GAACC--GGTGTCTATCCATGATCCAG-TAGGAC--AAACTCA----TTA  1229

seq1  TTTGGCT-TTACGTTTTAAGAGATATG  1276
      ||||||| ||  |  ||||||||||||
seq2  TTTGGCTCTTCAGCATTAAGAGATATG  1256

seq1: chr19_11219230_11220352
seq2: B6Ng01-067P18.g_68_1180 (reverse)

seq1  TATCTGAATACAACAAACAAGAACACTTGTTTGGCCTCTATTTGGTGGGG  50
      |||||| |||||||||  |||||||| ||||    |||||||||   |||
seq2  TATCTG-ATACAACAACAAAGAACAC-TGTT---GCTCTATTTG--TGGG  43

seq1  GTGTGGGTG-ATACAGAAATGCAATAGGCAATAAATACTTTGGAAATACT  99
      ||||||||| | |||||||||||||| ||| |||||||||| ||||||||
seq2  GTGTGGGTGAAAACAGAAATGCAATA-GCATTAAATACTTT-GAAATACT  91

seq1  TGGGTAGTTTCTTTAGAAAATGAAAAGTATCCATATATAAGAGGAACAAG  149
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGTTTC-TTAGAAAATGAAAAGTATCCATATATAAGAGGAACAAG  140

seq1  GAATATGTCTGTATCAAGACTTATTGGTATTCATAGCAGCTTTATTTGCA  199
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATATTTCTGTATCAAGACTTATTGGTATTCATAGCAGCTTTA-TTGCA  189

seq1  AGGGTTCAATATTCAGAACAATGTGAATTCCCTTACTAGGTAAGTGTAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCAATATTCAGAACAATGTGAATTCCCTTACTAGGTAAGTGTAAC  239

seq1  AAATTACACAGACACCCAGTTAATTTTTTTCCCTTACAGGAAACTTATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACACAGACACCCAGTTAATTTTTTTCCCTTACAGGAAACTTATGT  289

seq1  TCTGTAACACTGATAAATCTTACTAATTTATTCTGGATTTTTTGATGGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACACTGATAAATCTTACTAATTTATTCTGGATTTTTTGATGGAT  339

seq1  CTAGACTTCTTTGGATGTTGTAGGATGTCTTAGCATGTTTCTGATGGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTCTTTGGATGTTGTAGGATGTCTTAGCATGTTTCTGATGGCTG  389

seq1  TGGATGAAGCACATAGTCGGACTCTCTAGTCTCAAAGCTCTTTGTATCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAAGCACATAGTCGGACTCTCTAGTCTCAAAGCTCTTTGTATCTT  439

seq1  TTCCCCCCTTGACTCACTACTTTAAATAACAACTCTGATGTCCTGTTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCTTGACTCACTACTTTAAATAACAACTCTGATGTCCTGTTAAA  489

seq1  TGAATTTTTTGGCATAGTGCACATGTACACTGTTACTGACTGTTTCAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTTGGCATAGTGCACATGTACACTGTTACTGACTGTTTCAGAT  539

seq1  TGCTTTCTGTTGCTGTGATGAATACCATGACCAAAAGCAATTTAGGGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTGTTGCTGTGATGAATACCATGACCAAAAGCAATTTAGGGAAA  589

seq1  GAAAGGGTTTATATCAGTTTACAGTCCATTATAGAGGAAACTCAAGATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTTTATATCAGTTTACAGTCCATTATAGAGGAAACTCAAGATAG  639

seq1  AACTCGAAGTAGAAACATTGAGGCAGGAACCATGGAGAAACATCACTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGAAGTAGAAACATTGAGGCAGGAACCATGGAGAAACATCACTTAC  689

seq1  TGGCTTGCTCCCTCTGGCTTGCTCAGCTAGCTTTCTTACACAGCCCGGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTCCCTCTGGCTTGCTCAGCTAGCTTTCTTACACAGCCCGGAC  739

seq1  ACACTTGCCTAGGCATGGCACCACCCTCAGTAGGCTGCATCCTTTTACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCCTAGGCATGGCACCACCCTCAGTAGGCTGCATCCTTTTACAT  789

seq1  CAATTAGTAATCAAGACAATGCACCACAGATGTGGGATCTGAATTCAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGTAATCAAGACAATGCACCACAGATGTGGGATCTGAATTCAGGT  839

seq1  CCTTTCGTTTGCCCAGAAAGTGAGCCGTATCCCTGGCCCTGCTTTCTTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCGTTTGCCCAGAAAGTGAGCCGTATCCCTGGCCCTGCTTTCTTAG  889

seq1  TTTGAAGTTTAGGTTTGGAAAGCTTTAAGAAATAGTGGTCCTCCTTTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTTTAGGTTTGGAAAGCTTTAAGAAATAGTGGTCCTCCTTTCTC  939

seq1  ACTGAGGCCTGACAAGGCAGCCCTACTAGGCAGTGCTCTTTGTTCTAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCCTGACAAGGCAGCCCTACTAGGCAGTGCTCTTTGTTCTAAGA  989

seq1  ATTAAAGTAAATTATTGTTATAAAAAAGAAATAATGTTTTGATTTGCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTAAATTATTGTTATAAAAAAGAAATAATGTTTTGATTTGCATT  1039

seq1  TCTCTGATGATTAAGGATGCTGAGCATTTTTTCAGGTGCTTCTCAGCCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATGATTAAGGATGCTGAGCATTTTTTCAGGTGCTTCTCAGCCAT  1089

seq1  TTGGTATTCCTCAGGTGAGAATTC  1123
      ||||||||||||||||||||||||
seq2  TTGGTATTCCTCAGGTGAGAATTC  1113