BAC Information

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BAC

Clone NameB6Ng01-068H24
Chromosome19 (Build37)
Map Location 5,958,506 - 6,138,009
singlet/doubletdoublet
Overlap genePola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2
Upstream geneMrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2
Downstream geneEG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068H24.bB6Ng01-068H24.g
ACCDH887071DH887072
length1,0321,069
definitionDH887071|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H24, 5' end.DH887072|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,958,506 - 5,959,536)(6,136,944 - 6,138,009)
sequence
gaattcacagatatccacctgccactgctcccaagtgttgggactaaagg
tgagtgcccccatgcacagctctgtgatgtggttttaagaatgctattta
cgggctggagagatggctcagtaggtaagagcactgactgctcttccaaa
gaccctgagttcaaatcccagcaaccacatggtggctcataaccacctat
aatgggatctgatgtcctcttctggtgtgtctgaagacagctacagtgtg
ctcatatacataaaaaaaaaaagttatgtgtaggatgcaattcccagatg
ccgcatgttcaccttagagggtgtggtataagagcttaggagggtctcct
cttcctcctctgcttcaattctgaaaacactggtcaaggagagcaactac
aggagagtaaatgagagactgaatgttaggcatttttaaagtttgtttta
aaagcatatatacaacctgggaaattacatagcacatgtatgtgcttagt
ccaaagaccttcagcagaaaaggatacagctcttgtatagaaacaatgtc
tctggttcctgcatgcccactgtctttggaggcactgtgccaggctttgg
agagttttttgttcagaacctgaggaatggaacagaagaaaatggtgaat
atgtttagtccatagtctgggcaggggaacatgggggtagggggccgcat
ttcccatttgaaataatctcaggcattcagaatgtaagcaaagaaaggct
ggttggtagagcagttgccaggcatgcgagaagccctgggttcaatacca
gcatcaccccactcccacccttaatgccagcactgcaaagcagaagcagt
gggcccctgagtttaaggccagcctggtctgcataaggagaccctgcctc
taaaccaacaaacacatgacagtctgggcatggtggaacatgcctccttg
ttatcctagcactgggagagagcttctcccataggagctggagaggatgg
ctctaatggttaagagcactgacttctcttcc
gaattccattttcatacttctacatttatctcaagccagttatgggtcag
gcacgtgctcaacttgcttctacatacagtaggaaagtactagtccctag
gagggtggtagtgtgatgacatgtcctccaacagaactcagagacctctc
cttagcctttgtgccccagtggcttggacaacgctggcaaaacaaccatc
ctcaagaagttcaatggagaagacgtggacaccatctccccgacactggg
cttcaacatcaagaccctggagcaccgcgggtgagtagggtcaccgaggg
ccattgtggggctgggaggaggctgggagggcaggagcagcctgaccttc
atcgccccttccttcccagattcaagctgaacatctgggatgtaggtggc
cagaagtctctgcgctcctactggaggaactactttgagagcacggatgg
cctcatctgggtggtggacagcgccgaccgccagcgcatgcaggactgtc
agcgagagctgcagagcctactggtggaggaggtgtgccccaggcttcca
cctgcagctaggccagacacccgccacaagtgccaggatttactggggca
cttggggagggagtgggtccgttctctcactgggccccaggctgagactt
ggatgcacatctctgcctttactgattcgccactgagtctcggtctcatt
gttgcagggctgccgcaaggctagggccaagctcagggaggcagtgaagc
ttgcacaggaaccgaaccttgttgtgtgggttcaggaagacacatgaccg
ctctgagccttaacttccacattcctaaagtaataattaggctaatcttg
ctatttctttgtctggaccaaaagacttgtctgtgacaacagttttactc
tgtatctcaggttgcctcaactggctgacactgttcctgaactcctgatc
cacctgcctcaacttggcaaatgatgtggtggccacacatcattccagtg
ttatccacgccctccttcattatggctttcttattttacctggcagggcc
tctggtggttttttgttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5958506_5959536
seq2: B6Ng01-068H24.b_48_1079

seq1  GAATTCACAGATATCCACCTGCCACTGCTCCCAAGTGTTGGGACTAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGATATCCACCTGCCACTGCTCCCAAGTGTTGGGACTAAAGG  50

seq1  TGAGTGCCCCCATGCACAGCTCTGTGATGTGGTTTTAAGAATGCTATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCCCCCATGCACAGCTCTGTGATGTGGTTTTAAGAATGCTATTTA  100

seq1  CGGGCTGGAGAGATGGCTCAGTAGGTAAGAGCACTGACTGCTCTTCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTGGAGAGATGGCTCAGTAGGTAAGAGCACTGACTGCTCTTCCAAA  150

seq1  GACCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAACCACCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAACCACCTAT  200

seq1  AATGGGATCTGATGTCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATCTGATGTCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTG  250

seq1  CTCATATACATAAAAAAAAAAAGTTATGTGTAGGATGCAATTCCCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATACATAAAAAAAAAAAGTTATGTGTAGGATGCAATTCCCAGATG  300

seq1  CCGCATGTTCACCTTAGAGGGTGTGGTATAAGAGCTTAGGAGGGTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATGTTCACCTTAGAGGGTGTGGTATAAGAGCTTAGGAGGGTCTCCT  350

seq1  CTTCCTCCTCTGCTTCAATTCTGAAAACACTGGTCAAGGAGAGCAACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTCTGCTTCAATTCTGAAAACACTGGTCAAGGAGAGCAACTAC  400

seq1  AGGAGAGTAAATGAGAGACTGAATGTTAGGCATTTTTAAAGTTTGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTAAATGAGAGACTGAATGTTAGGCATTTTTAAAGTTTGTTTTA  450

seq1  AAAGCATATATACAACCTGGGAAATTACATAGCACATGTATGTGCTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATATATACAACCTGGGAAATTACATAGCACATGTATGTGCTTAGT  500

seq1  CCAAAGACCTTCAGCAGAAAAGGATACAGCTCTTGTATAGAAACAATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGACCTTCAGCAGAAAAGGATACAGCTCTTGTATAGAAACAATGTC  550

seq1  TCTGGTTCCTGCATGCCCACTGTCTTTGGAGGCACTGTGCCAGGCTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCCTGCATGCCCACTGTCTTTGGAGGCACTGTGCCAGGCTTTGG  600

seq1  AGAGTTTTTTGTTCAGAACCTGAGGAATGGAACAGAAGAAAATGGTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTTTGTTCAGAACCTGAGGAATGGAACAGAAGAAAATGGTGAAT  650

seq1  ATGTTTAGTCCATAGTCTGGGCAGGGGAACATGGGGGTAGGGGGCCGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGTCCATAGTCTGGGCAGGGGAACATGGGGGTAGGGGGCCGCAT  700

seq1  TTCCCATTTGAAATAATCTCAGGCATTCAGAATGTAAGCAAAGAAAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTTGAAATAATCTCAGGCATTCAGAATGTAAGCAAAGAAAGGCT  750

seq1  GGTTGGTAGAGCAGTTGCCAGGCATGCGAGAAGCCCTGGGTTCAATACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTAGAGCAGTTGCCAGGCATGCGAGAAGCCCTGGGTTCAATACCA  800

seq1  GCATCACCCCACTCCCACCCTTAATGCCAGCACTGCAAAGCAGAAGCAGG  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCATCACCCCACTCCCACCCTTAATGCCAGCACTGCAAAGCAGAAGCA-G  849

seq1  TGGGCCCCTGAGTTTAAGGCCAGCCTGGTCTGCATAAGGAGACCCTGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCCTGAGTTTAAGGCCAGCCTGGTCTGCATAAGGAGACCCTGCCT  899

seq1  CTAAAACCAACAAACACATGACAGTCTGGGCATGGTGGAACATGCCTCC-  949
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CT-AAACCAACAAACACATGACAGTCTGGGCATGGTGGAACATGCCTCCT  948

seq1  TGTTATCCTAGCACTGGGAGAGAGCTTCTCCCATAGGAGCTGGAGA-GAT  998
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTTATCCTAGCACTGGGAGAGAGCTTCTCCCATAGGAGCTGGAGAGGAT  998

seq1  GGCTC-AGTGGTTAAGAGCACTGACTTCTCTTCC  1031
      ||||| | ||||||||||||||||||||||||||
seq2  GGCTCTAATGGTTAAGAGCACTGACTTCTCTTCC  1032

seq1: chr19_6136944_6138009
seq2: B6Ng01-068H24.g_69_1137 (reverse)

seq1  ACAACAAA-------CAGAAGCCCTGCCCAGATAAATAAGAAGCCAATAA  43
      ||||||||       |||| ||||||||  |  |||||||||  | ||||
seq2  ACAACAAAAAACCACCAGAGGCCCTGCCAGGTAAAATAAGAAAGCCATAA  50

seq1  TGAAGGAGTGCGGTGGTATACACCTGGAATGATGTGTGGCACACACATCA  93
      |||||||| || |||| |||   |||||||||||||||||   |||||||
seq2  TGAAGGAGGGC-GTGG-ATAACACTGGAATGATGTGTGGCCACCACATCA  98

seq1  TTTGGCAAGTAGAGGCAGGTGGATCAGGAGTTCAGGGACAGTGTCAGCCA  143
      |||| ||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TTTGCCAAGTTGAGGCAGGTGGATCAGGAGTTCAGGAACAGTGTCAGCCA  148

seq1  GTTGAGGCCAGCCTGAGATACAGAGTAAAACTGTTGTCAACAAGACAAGT  193
      ||||||| || ||||||||||||||||||||||||||||   ||||||||
seq2  GTTGAGG-CAACCTGAGATACAGAGTAAAACTGTTGTCA--CAGACAAGT  195

seq1  CTTTTGGTCCAGAC-AAGAAATGGCAAGATTAGCCTAATTATTACTTTAG  242
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  CTTTTGGTCCAGACAAAGAAATAGCAAGATTAGCCTAATTATTACTTTAG  245

seq1  GAATGTGGAAGTTAAGGCTCAGAGCGGTCATGTGTCTTCCTGAACCCACA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGAAGTTAAGGCTCAGAGCGGTCATGTGTCTTCCTGAACCCACA  295

seq1  CAACAAGGTTCGGTTCCTGTGCAAGCTTCACTGCCTCCCTGAGCTTGGCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGTTCGGTTCCTGTGCAAGCTTCACTGCCTCCCTGAGCTTGGCC  345

seq1  CTAGCCTTGCGGCAGCCCTGCAACAATGAGACCGAGACTCAGTGGCGAAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTGCGGCAGCCCTGCAACAATGAGACCGAGACTCAGTGGCGAAT  395

seq1  CAGTAAAGGCAGAGATGTGCATCCAAGTCTCAGCCTGGGGCCCAGTGAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAGGCAGAGATGTGCATCCAAGTCTCAGCCTGGGGCCCAGTGAGA  445

seq1  GAACGGACCCACTCCCTCCCCAAGTGCCCCAGTAAATCCTGGCACTTGTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGACCCACTCCCTCCCCAAGTGCCCCAGTAAATCCTGGCACTTGTG  495

seq1  GCGGGTGTCTGGCCTAGCTGCAGGTGGAAGCCTGGGGCACACCTCCTCCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGTGTCTGGCCTAGCTGCAGGTGGAAGCCTGGGGCACACCTCCTCCA  545

seq1  CCAGTAGGCTCTGCAGCTCTCGCTGACAGTCCTGCATGCGCTGGCGGTCG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGGCTCTGCAGCTCTCGCTGACAGTCCTGCATGCGCTGGCGGTCG  595

seq1  GCGCTGTCCACCACCCAGATGAGGCCATCCGTGCTCTCAAAGTAGTTCCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGTCCACCACCCAGATGAGGCCATCCGTGCTCTCAAAGTAGTTCCT  645

seq1  CCAGTAGGAGCGCAGAGACTTCTGGCCACCTACATCCCAGATGTTCAGCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGGAGCGCAGAGACTTCTGGCCACCTACATCCCAGATGTTCAGCT  695

seq1  TGAATCTGGGAAGGAAGGGGCGATGAAGGTCAGGCTGCTCCTGCCCTCCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGGGAAGGAAGGGGCGATGAAGGTCAGGCTGCTCCTGCCCTCCC  745

seq1  AGCCTCCTCCCAGCCCCACAATGGCCCTCGGTGACCCTACTCACCCGCGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTCCCAGCCCCACAATGGCCCTCGGTGACCCTACTCACCCGCGG  795

seq1  TGCTCCAGGGTCTTGATGTTGAAGCCCAGTGTCGGGGAGATGGTGTCCAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGGGTCTTGATGTTGAAGCCCAGTGTCGGGGAGATGGTGTCCAC  845

seq1  GTCTTCTCCATTGAACTTCTTGAGGATGGTTGTTTTGCCAGCGTTGTCCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCCATTGAACTTCTTGAGGATGGTTGTTTTGCCAGCGTTGTCCA  895

seq1  AGCCACTGGGGCACAAAGGCTAAGGAGAGGTCTCTGAGTTCTGTTGGAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGGGGCACAAAGGCTAAGGAGAGGTCTCTGAGTTCTGTTGGAGG  945

seq1  ACATGTCATCACACTACCACCCTCCTAGGGACTAGTACTTTCCTACTGTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCATCACACTACCACCCTCCTAGGGACTAGTACTTTCCTACTGTA  995

seq1  TGTAGAAGCAAGTTGAGCACGTGCCTGACCCATAACTGGCTTGAGATAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGCAAGTTGAGCACGTGCCTGACCCATAACTGGCTTGAGATAAA  1045

seq1  TGTAGAAGTATGAAAATGGAATTC  1066
      ||||||||||||||||||||||||
seq2  TGTAGAAGTATGAAAATGGAATTC  1069