BAC Information

Click to search

BAC

Clone NameB6Ng01-069N16
Chromosome19 (Build37)
Map Location 26,714,490 - 26,913,802
singlet/doubletdoublet
Overlap geneSmarca2
Upstream geneDmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857
Downstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069N16.bB6Ng01-069N16.g
ACCDH888029DH888030
length1,124699
definitionDH888029|Mus musculus domesticus DNA, BAC clone: B6Ng01-069N16, 5' end.DH888030|Mus musculus domesticus DNA, BAC clone: B6Ng01-069N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,912,669 - 26,913,802)(26,714,490 - 26,715,186)
sequence
gaattctctcccatcccagtgtccaaaataagtcttttcatattttcttt
tagtgtttttatagtttcaggacttacatgtaaatcttgctacattttga
gttcttttgaacatcattgtaactggtaagacataggaatctaccatcac
tttttttttcttactttttgaagatttttttttccagagcctccttgatg
tctgttagttctatttactccatggtaacctttaactgttgtttccctgt
tgatattctctctggataatctgtatctgctgcttcaaatgaaatgccat
agtcttcagctatcattcaggagtacccagtctagtaatacctactttat
gtacttgagtaccccatcatttcgtacatatgtatttagaattcagctcc
tgctgaactgatacctttgttattgtatacggtattttatttctttttat
ccctttgcctttatagtgcattttatcttaagttaacatggctgttcctc
attctttttaagttatgtctgcaaggaaggtcttgcttcatcagtccctt
gtcaggctatgcgtgtcctaagaggtaaactgagttttttttttttttat
gagtttctaactgtaattgttagtttattcattatgaggatatgatttta
accacaatgaaaagtaagggagaaagaatattcatggattctgatttcta
acaacatattgaatacatcagctgcttttcccattctattgaccaaatat
ctgacagaaaataaattcatggagatgggcttgtttaggtttacaattta
aggtatgccaacccagttatgacatggaaggaaggctttgtaggagtatc
ttgtggctatcaggataggagcatgaaacttaatcatgtctccaaggacc
tgaaagcatctagataagaatactagcagttagctggtttgtcttttgtt
tttactttgtaaactgagttttttgtagcaacttatggtggatcttttta
cccactcagtaactgtttttaattggcaaatttcgttctttacattcaaa
gtaattaaaatagaatgtctatgccctccctctttccctcttcccctcct
cccatttctttcctcctttcctgt
gaattctttctttttttggagtttgaatccacctgtgattcttaagcaac
aacaaacctactgcagaatgtggcgttaaaaagccactttgtcatttcct
tgatttattacaatgaggagtcattttttgtgtgtgtggatatttttgac
aatattcattagtacgtgccattttcccgtgggatacatgctaggccact
ttttctctttcacccctgcccttcatttctttccttcctttgtgccctct
atcagtcagctcttgagtttaagacaatggcagcctcagaccctaggtag
tgattgatggatggaggagagataggtatggtcagcaggggggtccttcc
atctgacctgtcctgcttatgtcccttttgtctcacatgccccgggcagg
agctgctactgagtggccagagcgctccgcagaagctgtcagcaccagca
ccaagcggccgaccttcaccggcaccccaggccgccgtccagcccacggc
cacagcggtgcccgggccctccgtgcagcagcccgccccagggcagccgt
ctccggtcctacagctgcaacagaaagcagagccgcatcagccccatcca
gaaaccgcaaggcctggacccggtggagatcctgcaggaacgagagtaca
ggtagcgccaggccattcccaggaccagggggttgatacttgcctcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26912669_26913802
seq2: B6Ng01-069N16.b_50_1173 (reverse)

seq1  ACAGGGAAGGAGAGAAAGAAAATGGGAGGGAGGGGAAGGAGGGGAAAGAG  50
      ||||| |||||| ||||| |||||||| ||||||||||   |||||||||
seq2  ACAGGAAAGGAG-GAAAG-AAATGGGA-GGAGGGGAAG--AGGGAAAGAG  45

seq1  GGAGGGGCATAAGACATTTACTATTATAATTACTTTGAATGTAAAAGAAC  100
      ||| |||||| |||||||  ||||| |||||||||||||||| |||||||
seq2  GGA-GGGCAT-AGACATT--CTATTTTAATTACTTTGAATGT-AAAGAAC  90

seq1  GAAATTTGCCAATTAAAATACAGTTACTGAGTGGGTAAAAAAGATCCAAC  150
      |||||||||||||||||| ||||||||||||||||| |||||||||| ||
seq2  GAAATTTGCCAATTAAAA-ACAGTTACTGAGTGGGT-AAAAAGATCC-AC  137

seq1  CATAAGTTGCTTACAAAAAACTCAGTTTACAAAGTAAAAAC-AGAGACAA  199
      |||||||||| |||||||||||||||||||||||||||||| | ||||||
seq2  CATAAGTTGC-TACAAAAAACTCAGTTTACAAAGTAAAAACAAAAGACAA  186

seq1  A-CAGCTAACTGCTAGTATTCTTATCTAGATGCTTTCAGGTCCTTGGAGA  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTAACTGCTAGTATTCTTATCTAGATGCTTTCAGGTCCTTGGAGA  236

seq1  CATGATTAAGTTTCATGCTCCTATCCTGATAGCCACAAGATACTCCTAC-  297
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATGATTAAGTTTCATGCTCCTATCCTGATAGCCACAAGATACTCCTACA  286

seq1  AAGCCTTCCTTCCATGTCAT-ACTGGGTTGGCATACCTTAAATTGTAAAC  346
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGCCTTCCTTCCATGTCATAACTGGGTTGGCATACCTTAAATTGTAAAC  336

seq1  CTAAACAAGCCCATCTCCATGAATTTATTTTCTGTCAGATATTTGGTCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAAGCCCATCTCCATGAATTTATTTTCTGTCAGATATTTGGTCAA  386

seq1  TAGAATGGGAAAAGCAGCTGATGTATTCAATATGTTGTTAGAAATCAGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGGGAAAAGCAGCTGATGTATTCAATATGTTGTTAGAAATCAGAA  436

seq1  TCCATGAATATTCTTTCTCCCTTACTTTTCATTGTGGTTAAAATCATATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAATATTCTTTCTCCCTTACTTTTCATTGTGGTTAAAATCATATC  486

seq1  CTCATAATGAATAAACTAACAATTACAGTTAGAAACTCATAAAAAAAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAATGAATAAACTAACAATTACAGTTAGAAACTCATAAAAAAAAAA  536

seq1  AAAACTCAGTTTACCTCTTAGGACACGCATAGCCTGACAAGGGACTGATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAGTTTACCTCTTAGGACACGCATAGCCTGACAAGGGACTGATG  586

seq1  AAGCAAGACCTTCCTTGCAGACATAACTTAAAAAGAATGAGGAACAGCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGACCTTCCTTGCAGACATAACTTAAAAAGAATGAGGAACAGCCA  636

seq1  TGTTAACTTAAGATAAAATGCACTATAAAGGCAAAGGGATAAAAAGAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACTTAAGATAAAATGCACTATAAAGGCAAAGGGATAAAAAGAAAT  686

seq1  AAAATACCGTATACAATAACAAAGGTATCAGTTCAGCAGGAGCTGAATTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCGTATACAATAACAAAGGTATCAGTTCAGCAGGAGCTGAATTC  736

seq1  TAAATACATATGTACGAAATGATGGGGTACTCAAGTACATAAAGTAGGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATATGTACGAAATGATGGGGTACTCAAGTACATAAAGTAGGTA  786

seq1  TTACTAGACTGGGTACTCCTGAATGATAGCTGAAGACTATGGCATTTCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGACTGGGTACTCCTGAATGATAGCTGAAGACTATGGCATTTCAT  836

seq1  TTGAAGCAGCAGATACAGATTATCCAGAGAGAATATCAACAGGGAAACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCAGCAGATACAGATTATCCAGAGAGAATATCAACAGGGAAACAA  886

seq1  CAGTTAAAGGTTACCATGGAGTAAATAGAACTAACAGACATCAAGGAGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAAGGTTACCATGGAGTAAATAGAACTAACAGACATCAAGGAGGC  936

seq1  TCTGGAAAAAAAAATCTTCAAAAAGTAAGAAAAAAAAAGTGATGGTAGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAAAAAAATCTTCAAAAAGTAAGAAAAAAAAAGTGATGGTAGAT  986

seq1  TCCTATGTCTTACCAGTTACAATGATGTTCAAAAGAACTCAAAATGTAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTCTTACCAGTTACAATGATGTTCAAAAGAACTCAAAATGTAGC  1036

seq1  AAGATTTACATGTAAGTCCTGAAACTATAAAAACACTAAAAGAAAATATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTACATGTAAGTCCTGAAACTATAAAAACACTAAAAGAAAATATG  1086

seq1  AAAAGACTTATTTTGGACACTGGGATGGGAGAGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTTATTTTGGACACTGGGATGGGAGAGAATTC  1124

seq1: chr19_26714490_26715186
seq2: B6Ng01-069N16.g_70_768

seq1  GAATTCTTTCTTTTTTTGGAGTTTGAATCCACCTGTGATTCTTAAGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTTTTTGGAGTTTGAATCCACCTGTGATTCTTAAGCAAC  50

seq1  AACAAACCTACTGCAGAATGTGGCGTTAAAAAGCCACTTTGTCATTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCTACTGCAGAATGTGGCGTTAAAAAGCCACTTTGTCATTTCCT  100

seq1  TGATTTATTACAATGAGGAGTCATTTTTTGTGTGTGTGGATATTTTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATTACAATGAGGAGTCATTTTTTGTGTGTGTGGATATTTTTGAC  150

seq1  AATATTCATTAGTACGTGCCATTTTCCCGTGGGATACATGCTAGGCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATTAGTACGTGCCATTTTCCCGTGGGATACATGCTAGGCCACT  200

seq1  TTTTCTCTTTCACCCCTGCCCTTCATTTCTTTCCTTCCTTTGTGCCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTCACCCCTGCCCTTCATTTCTTTCCTTCCTTTGTGCCCTCT  250

seq1  ATCAGTCAGCTCTTGAGTTTAAGACAATGGCAGCCTCAGACCCTAGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAGCTCTTGAGTTTAAGACAATGGCAGCCTCAGACCCTAGGTAG  300

seq1  TGATTGATGGATGGAGGAGAGATAGGTATGGTCAGCAGGGGGGTCCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATGGATGGAGGAGAGATAGGTATGGTCAGCAGGGGGGTCCTTCC  350

seq1  ATCTGACCTGTCCTGCTTATGTCCCTTTTGTCTCACAGGCCCCGGGCAGG  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATCTGACCTGTCCTGCTTATGTCCCTTTTGTCTCACATGCCCCGGGCAGG  400

seq1  AGCTGCTACTGAGTGGCCAGAGCGCTCCGCAGAAGCTGTCAGCACCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTACTGAGTGGCCAGAGCGCTCCGCAGAAGCTGTCAGCACCAGCA  450

seq1  CCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCCGTCCAGCCCACGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCCGTCCAGCCCACGGC  500

seq1  CACAGCGGTGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGGTGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGT  550

seq1  CTCCGGTCCTACAGCTGCAACAG-AAGCAGAGCCGCATCAGCCCCATCCA  599
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCCGGTCCTACAGCTGCAACAGAAAGCAGAGCCGCATCAGCCCCATCCA  600

seq1  GAAACCGCAAGGCCTGGACCCGGTGGAGATCCTGCAGGAACGAGAGTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCGCAAGGCCTGGACCCGGTGGAGATCCTGCAGGAACGAGAGTACA  650

seq1  GGTAGCGCCAGGCCATTCCCAGGACCA-GGGGTTGATACTTGCCTCGTG  697
      ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTAGCGCCAGGCCATTCCCAGGACCAGGGGGTTGATACTTGCCTCGTG  699