BAC Information

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BAC

Clone NameB6Ng01-069N22
Chromosome19 (Build37)
Map Location 55,449,635 - 55,622,670
singlet/doubletdoublet
Overlap geneVti1a, LOC100043479
Upstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6
Downstream geneTcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069N22.bB6Ng01-069N22.g
ACCDH888041DH888042
length1,0821,094
definitionDH888041|Mus musculus domesticus DNA, BAC clone: B6Ng01-069N22, 5' end.DH888042|Mus musculus domesticus DNA, BAC clone: B6Ng01-069N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,621,575 - 55,622,670)(55,449,635 - 55,450,742)
sequence
gaattcagttcactataaacctttgaacaccagggaagcaagcagccact
gttgctgagggcttagttttcagtcaggcaggattccgctggtgtcccat
acgggccggactatgttttggctttacccagcactactctggaacaggat
ttcttctctcatctacttgccacttgattctcattggcctgttttcccca
ttgctccctctcctttgcctcctggcttctcgtaactgacaacctactct
taacttctgcaagacaaagccttctaatttttaagactctttttatgtat
gtatgtatgtatgtatgtatgtatgcatgtgcgccgcatgcatgcttggg
ggctgaggaggctaggagaggtgtgggcggattccccgaactgaggacac
acacagttgtgagctgccatgttgtgggtcctctgagaagctgccagtgc
tctaactgttgagtcatctcttcagccaccaccctcccctcacttcgcag
tgctgattattcacctggctgtggagaagtgtctttgctttatgtcatcc
atctgtctgtctgtctatgttgtaatccatctgtctgtctatgtttgctt
ttgctttccgtgatttggggtcgtagatggtaaatctttgcatagcccaa
caacactgagcggttctcctctattttcttctaatgtttcatggctttgt
atattactccttctcagttgatgatgaaagacatggtctagttttattct
tctgcatgtggatacccaattttcctcagaaacatttgctaaagagacag
tccttttcccagtgtatgctcttagaacactgagtgaatatttattagca
tctatagtttttgaagcctctgatgatttttgccatagccagagctgagg
gctactgggctaacctgacacatgttcagaaagactcataagaataaaag
aaaacttgcattttggtaaaaagacatgcaccttgtaggattctcatcaa
ctatgtgacctgagacccttggtcaaaaacatgtgttaaatagatggaaa
ctgctttggatctccacggagacccgcaatga
gaattcatgtggtaggaggagagaactgacgcatgcaagttgttctctga
cctttatatatgcagcatggcacacatgcatgcatacacgtgaatgcaca
cgcacacacaataagtaaataaatatgtaatgaaaatgagagtatgcatt
ctcttcactgataccaagtcctggcagcacgtgggccaggcacttgatgt
ttagactggtcagcatctaaactgtctcctgaacaaggacaaccatgctt
catggaataattccttaaaagattgaaacttaattcctctaataatattg
gagaagtacagtcaggtttttttattttcctaaaccatctgcaattgcag
caccatttatatcagaattattgagtccaattatggggagttcctcaaac
aacttttggtgtgttgggaaagcgtctttaggaaggatgcagtaatcagt
actcttagtcatgtgtgtgtgtcagcttcactccatactctgtattcaga
ggaacacgcttcctgtggttatcacagccaaagtgttaagaaagatttac
atttgttcatcattaaatccatgcactagccgcaggaagtaattgttaag
atcactgttgtagacatgagggttgtgatgctccatgatcaagatcactg
actgaccgaggtgctgtctgggttctttctgtgcctttccatcctagcag
catgcccaggatcaggccattgctttacaagtttactttgcctttatctg
aactgtgtagggtgagatgttgtcatagaagttactctatggatggaagg
atgaaccaagccgtggacagatagggagtgtggttagaaacgaatacttg
gtgccaaagatagatatattttcaaaactactagctgaacatttacagtg
ccgtgatgttattattagaaccgggtaaagtaaggtaagatgtgatgccc
agcagtcatatggataggtaataatataaattcgtactgttctggagata
tctcgtgttaattacaacagagcggtaagttctttggacgtaaatcttgc
tctgaagcttagcaggtttaataggtgatcacctggtaccatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55621575_55622670
seq2: B6Ng01-069N22.b_46_1127 (reverse)

seq1  TCATTGCTGGTCTCCGTGGAGATCCAAAAGCAGTTTCCATCTATGTTAAC  50
      ||||||| ||||||||||||||||| |||||||||||||||||| |||||
seq2  TCATTGCGGGTCTCCGTGGAGATCC-AAAGCAGTTTCCATCTAT-TTAAC  48

seq1  ACATGTTTTTGTACAAGGGTCTCATGTTCACATAAGTTTGATGGGAATCC  100
      |||||||||||  ||||||||||| | |||||||   |||||| ||||||
seq2  ACATGTTTTTGACCAAGGGTCTCA-GGTCACATA--GTTGATGAGAATCC  95

seq1  TACAAGGTGCCATGTCTTTTTACAGAAATGCCAGGTTTTCTTTTATTCTT  150
      ||||||||| |||||||||||||  ||||| || ||||||||||||||||
seq2  TACAAGGTG-CATGTCTTTTTACCAAAATG-CAAGTTTTCTTTTATTCTT  143

seq1  ATGGAGTCTTTCTGAAACATGTGTCAGGTTAGCCCAGTAGCCCTCAGCTC  200
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AT-GAGTCTTTCTG-AACATGTGTCAGGTTAGCCCAGTAGCCCTCAGCTC  191

seq1  TGGCTATTGGCAAAAATCATCAGAGGCTTCAAAAACTATAGATGCTAATA  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTA-TGGCAAAAATCATCAGAGGCTTCAAAAACTATAGATGCTAATA  240

seq1  AATATTCACTCAGTGTTCTAAGAGCATACACTGGGAAAAGGACTGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCACTCAGTGTTCTAAGAGCATACACTGGGAAAAGGACTGTCTCT  290

seq1  TTAGCAAATGTTTCTGAGGAAAATTGGGTATCCACATGCAGAAGAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAATGTTTCTGAGGAAAATTGGGTATCCACATGCAGAAGAATAAA  340

seq1  ACTAGACCATGTCTTTCATCATCAACTGAGAAGGAGTAATATACAAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACCATGTCTTTCATCATCAACTGAGAAGGAGTAATATACAAAGCC  390

seq1  ATGAAACATTAGAAGAAAATAGAGGAGAACCGCTCAGTGTTGTTGGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACATTAGAAGAAAATAGAGGAGAACCGCTCAGTGTTGTTGGGCTA  440

seq1  TGCAAAGATTTACCATCTACGACCCCAAATCACGGAAAGCAAAAGCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGATTTACCATCTACGACCCCAAATCACGGAAAGCAAAAGCAAAC  490

seq1  ATAGACAGACAGATGGATTACAACATAGACAGACAGACAGATGGATGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGACAGATGGATTACAACATAGACAGACAGACAGATGGATGACA  540

seq1  TAAAGCAAAGACACTTCTCCACAGCCAGGTGAATAATCAGCACTGCGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAAAGACACTTCTCCACAGCCAGGTGAATAATCAGCACTGCGAAG  590

seq1  TGAGGGGAGGGTGGTGGCTGAAGAGATGACTCAACAGTTAGAGCACTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGAGGGTGGTGGCTGAAGAGATGACTCAACAGTTAGAGCACTGGC  640

seq1  AGCTTCTCAGAGGACCCACAACATGGCAGCTCACAACTGTGTGTGTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCAGAGGACCCACAACATGGCAGCTCACAACTGTGTGTGTCCTC  690

seq1  AGTTCGGGGAATCCGCCCACACCTCTCCTAGCCTCCTCAGCCCCCAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGGGGAATCCGCCCACACCTCTCCTAGCCTCCTCAGCCCCCAAGCA  740

seq1  TGCATGCGGCGCACATGCATACATACATACATACATACATACATACATAC  800
      |||||||||||||||||    |||||||||||||||||||||||||||||
seq2  TGCATGCGGCGCACATG----CATACATACATACATACATACATACATAC  786

seq1  ATAAAAAGAGTCTTAAAAATTAGAAGGCTTTGTCTTGCAGAAGTTAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAGTCTTAAAAATTAGAAGGCTTTGTCTTGCAGAAGTTAAGAG  836

seq1  TAGGTTGTCAGTTACGAGAAGCCAGGAGGCAAAGGAGAGGGAGCAATGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTCAGTTACGAGAAGCCAGGAGGCAAAGGAGAGGGAGCAATGGG  886

seq1  GAAAACAGGCCAATGAGAATCAAGTGGCAAGTAGATGAGAGAAGAAATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGGCCAATGAGAATCAAGTGGCAAGTAGATGAGAGAAGAAATCC  936

seq1  TGTTCCAGAGTAGTGCTGGGTAAAGCCAAAACATAGTCCGGCCCGTATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGAGTAGTGCTGGGTAAAGCCAAAACATAGTCCGGCCCGTATGG  986

seq1  GACACCAGCGGAATCCTGCCTGACTGAAAACTAAGCCCTCAGCAACAGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGCGGAATCCTGCCTGACTGAAAACTAAGCCCTCAGCAACAGTG  1036

seq1  GCTGCTTGCTTCCCTGGTGTTCAAAGGTTTATAGTGAACTGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTGCTTCCCTGGTGTTCAAAGGTTTATAGTGAACTGAATTC  1082

seq1: chr19_55449635_55450742
seq2: B6Ng01-069N22.g_68_1161

seq1  GAATTCATGTGGTAGGAGGAGAGAACTGACGCATGCAAGTTGTTCTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGGTAGGAGGAGAGAACTGACGCATGCAAGTTGTTCTCTGA  50

seq1  CCTTTATATATGCAGCATGGCACACATGCATGCATACACGTGAATGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATATATGCAGCATGGCACACATGCATGCATACACGTGAATGCACA  100

seq1  CGCACACACAATAAGTAAATAAATATGTAATGAAAATGAGAGTATGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACACAATAAGTAAATAAATATGTAATGAAAATGAGAGTATGCATT  150

seq1  CTCTTCACTGATACCAAGTCCTGGCAGCACGTGGGCCAGGCACTTGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACTGATACCAAGTCCTGGCAGCACGTGGGCCAGGCACTTGATGT  200

seq1  TTAGACTGGTCAGCATCTAAACTGTCTCCTGAACAAGGACAACCATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGGTCAGCATCTAAACTGTCTCCTGAACAAGGACAACCATGCTT  250

seq1  CATGGAATAATTCCTTAAAAGATTGAAACTTAATTCCTCTAATAATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATAATTCCTTAAAAGATTGAAACTTAATTCCTCTAATAATATTG  300

seq1  GAGAAGTACAGTCAGGTTTTTTTATTTTCCTAAACCATCTGCAATTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTACAGTCAGGTTTTTTTATTTTCCTAAACCATCTGCAATTGCAG  350

seq1  CACCATTTATATCAGAATTATTGAGTCCAATTATGGGGAGTTCCTCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTATATCAGAATTATTGAGTCCAATTATGGGGAGTTCCTCAAAC  400

seq1  AACTTTTGGTGTGTTGGGAAAGCGTCTTTAGGAAGGATGCAGTAATCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGGTGTGTTGGGAAAGCGTCTTTAGGAAGGATGCAGTAATCAGT  450

seq1  ACTCTTAGTCATGTGTGTGTGTCAGCTTCACTCCATACTCTGTATTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGTCATGTGTGTGTGTCAGCTTCACTCCATACTCTGTATTCAGA  500

seq1  GGAACACGCTTCCTGTGGTTATCACAGCCAAAGTGTTAAGAAAGATTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACGCTTCCTGTGGTTATCACAGCCAAAGTGTTAAGAAAGATTTAC  550

seq1  ATTTGTTCATCATTAAATCCATGCACTAGCCGCAGGAAGTAATTGTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCATCATTAAATCCATGCACTAGCCGCAGGAAGTAATTGTTAAG  600

seq1  ATCACTGTTGTAGACATGAGGGTTGTGATGCTCCATGATCAAGATCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTTGTAGACATGAGGGTTGTGATGCTCCATGATCAAGATCACTG  650

seq1  ACTGACCGAGGTGCTGTCTGGGTTCTTTCTGTGCCTTTCCATCCTAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCGAGGTGCTGTCTGGGTTCTTTCTGTGCCTTTCCATCCTAGCAG  700

seq1  CATGCCCAGGATCAGGCCATTGC-TTACAAGTTTACTTTGCCTTTATCTG  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATGCCCAGGATCAGGCCATTGCTTTACAAGTTTACTTTGCCTTTATCTG  750

seq1  AACTGTGTAGGGTGAGATGTTGTCATAGAAGTTACTCTATGGATGGAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTAGGGTGAGATGTTGTCATAGAAGTTACTCTATGGATGGAAGG  800

seq1  ATGAACCAAGCCGTGGACAGATA-GGAGTGTGGTTAGAAATCGAATACTT  848
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  ATGAACCAAGCCGTGGACAGATAGGGAGTGTGGTTAGAAA-CGAATACTT  849

seq1  GGTGCCAAAGATAGATATATTTTCAAAACTACTAGCTGAACA-TTACAGT  897
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGTGCCAAAGATAGATATATTTTCAAAACTACTAGCTGAACATTTACAGT  899

seq1  GCCGTGATGTTATTTAATTAGAACCGGGTAAAGTTAGGTAAGATGTGATG  947
      ||||||||||||||  |||||||||||||||||| |||||||||||||||
seq2  GCCGTGATGTTATT--ATTAGAACCGGGTAAAGTAAGGTAAGATGTGATG  947

seq1  CCCAGCAGTCATATGGATAGGTAATAAATATAAATTCGTACTGTTCTGTA  997
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  CCCAGCAGTCATATGGATAGGTAAT-AATATAAATTCGTACTGTTCTGGA  996

seq1  GATATCTCAGTGTTAATTACAACAGAAGCCGTTAAGTTCTTTGGAGCAGT  1047
      |||||||| |||||||||||||||||   || |||||||||||||   ||
seq2  GATATCTC-GTGTTAATTACAACAGA--GCGGTAAGTTCTTTGGA--CGT  1041

seq1  TAAATTCTTTGGCTCTGAAAGCATAGCAGGTTTTAATAGGTGTATCACCT  1097
        || ||||  |||||| |||| ||||||| ||||||||||| |||||||
seq2  --AAATCTT--GCTCTG-AAGCTTAGCAGG-TTTAATAGGTG-ATCACCT  1084

seq1  GGTAACCATGG  1108
      ||| |||||||
seq2  GGT-ACCATGG  1094