BAC Information

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BAC

Clone NameB6Ng01-070O11
Chromosome19 (Build37)
Map Location 20,471,475 - 20,472,705
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560
Downstream gene1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070O11.bB6Ng01-070O11.g
ACCDH888756DH888757
length1,2291,201
definitionDH888756|Mus musculus domesticus DNA, BAC clone: B6Ng01-070O11, 5' end.DH888757|Mus musculus domesticus DNA, BAC clone: B6Ng01-070O11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtggaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactgggttgttatcatgtagaaaatgcgaatcgatccatactatct
cctgtactaagtcaaatctagtggatcagacttcacataaaccagagaca
ctgaaactatagaagagaagtggggaaagccttgaagaatgggccagcaa
atctgaacgaaagcatgctgggccgtagatcggaatgacaatggactatg
gacttcaagttcgcaggcagactgcttagacaagtcagactgagcttaca
ttcatcgatggcatattccaattttagat
gaattccaactttcttattggtgacttaagttccatagattctgtatata
aattcttcagtaacatttaataatctgttcctttaaagtttttctccata
atattacaatctacttgccgcagaatctttgatgaaaaattaacaaacac
atgaactcaaagcagacagcatttgtttgatcaacagatttttaattaaa
aacatttcaactagcatatattaatgttacaaaatgatgagcatcacaag
gcatgatctcatgtgtgatgcttaaactttctgcccacagtcctctcttg
tacccacttgtcatgcaatttcacttcctgctccaaacaggccctttcta
ttttcaggtctacatgtatacatttcataagataatctgttcacagagat
aaaatatgtgatactcatacaaagtactgctcaaaattaaaatgactgtt
aagttagacattgattacagcacttgattaactgaggtaaggctattgtt
ttgagtttgaggctggcctgggctacatagcataattgtatcaaaccaag
aaaaaacacacattaatctatcttaagtacatattgctattggaagtaca
ccaatatgaaagaaatacaaatataggatgcagaatttcaacagtatggt
ttctgcagagagtaaaagatacaaggaatgttggggtgtgagggaccagg
ttcctattggagaagtaaaacgattgtctgtgagactgtgatgatgtata
tacgtcagacattttggcaaaatacagaacatgaaaagtgtgtcctaact
gaagtggggctgacagcccatgataatgtactaacactggttcacaaatg
cagcaaacacaccaatgcaggatatctgtaagaggagagaccaggggcaa
ggcaatgaatgagcacgttctctgtattttcttctcaagttttctagaaa
gctcagttttcttcaaacctatagtctactaaagagaaaaaattaagttg
gctttattattcttaagaattattagtgccatatattacaatgtaatatt
aaagtcgttttaaagtcaacagcttaaaagtcatgcattctttaattttt
attaataatctgatctcggtttttccagacggtttctctggtagcctggc
cgtcctggactccttggaccaggcatgcctcgacatgaaatcggcctgcc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20471475_20472705
seq2: B6Ng01-070O11.g_68_1268

seq1  GAATTCCAACTTTCTTATTGGTGACTTAAGTTCCATAGATTCTGTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTTTCTTATTGGTGACTTAAGTTCCATAGATTCTGTATATA  50

seq1  AATTCTTCAGTAACATTTAATAATCTGTTCCTTTAAAGTTTTTCTCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCAGTAACATTTAATAATCTGTTCCTTTAAAGTTTTTCTCCATA  100

seq1  ATATTACAATCTACTTGCCGCAGAATCTTTGATGAAAAATTAACAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACAATCTACTTGCCGCAGAATCTTTGATGAAAAATTAACAAACAC  150

seq1  ATGAACTCAAAGCAGACAGCATTTGTTTGATCAACAGATTTTTAATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCAAAGCAGACAGCATTTGTTTGATCAACAGATTTTTAATTAAA  200

seq1  AACATTTCAACTAGCATATATTAATGTTACAAAATGATGAGCATCACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCAACTAGCATATATTAATGTTACAAAATGATGAGCATCACAAG  250

seq1  GCATGATCTCATGTGTGATGCTTAAACTTTCTGCCCACAGTCCTCTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATCTCATGTGTGATGCTTAAACTTTCTGCCCACAGTCCTCTCTTG  300

seq1  TACCCACTTGTCATGCAATTTCACTTCCTGCTCCAAACAGGCCCTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACTTGTCATGCAATTTCACTTCCTGCTCCAAACAGGCCCTTTCTA  350

seq1  TTTTCAGGTCTACATGTATACATTTCATAAGATAATCTGTTCACAGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGTCTACATGTATACATTTCATAAGATAATCTGTTCACAGAGAT  400

seq1  AAAATATGTGATACTCATACAAAGTACTGCTCAAAATTAAAATGACTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTGATACTCATACAAAGTACTGCTCAAAATTAAAATGACTGTT  450

seq1  AAGTTAGACATTGATTACAGCACTTGATTAACTGAGGTAAGGCTATTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGACATTGATTACAGCACTTGATTAACTGAGGTAAGGCTATTGTT  500

seq1  TTGAGTTTGAGGCTGGCCTGGGCTACATAGCATAATTGTATCAAACCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTGAGGCTGGCCTGGGCTACATAGCATAATTGTATCAAACCAAG  550

seq1  AAAAAACACACATTAATCTATCTTAAGTACATATTGCTATTGGAAGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACACATTAATCTATCTTAAGTACATATTGCTATTGGAAGTACA  600

seq1  CCAATATGAAAGAAATACAAATATAGGATGCAGAATTTCAACAGTATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATGAAAGAAATACAAATATAGGATGCAGAATTTCAACAGTATGGT  650

seq1  TTCTGCAGAGAGTAAAAGATACAAGGAATGTTGGGGTGTGAGGGACCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGAGAGTAAAAGATACAAGGAATGTTGGGGTGTGAGGGACCAGG  700

seq1  TTCCTATTGGAGAAGTAAAACGATTGTCTGTGAGACTGTGATGATGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTGGAGAAGTAAAACGATTGTCTGTGAGACTGTGATGATGTATA  750

seq1  TACGTCAGACATTTTGGCAAAATACAGAACATGAAAAGTGTGTCCTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTCAGACATTTTGGCAAAATACAGAACATGAAAAGTGTGTCCTAACT  800

seq1  GAAGTGGGGCTGACAGCCCATGATAATGTACTAACACTGGTTCACAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGGCTGACAGCCCATGATAATGTACTAACACTGGTTCACAAATG  850

seq1  CAGCAAACACACCAATGCAGGATATCTGTAAGAGGAGAGACCAGGGGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACACACCAATGCAGGATATCTGTAAGAGGAGAGACCAGGGGCAA  900

seq1  GGCAATGAATGAGCACGTTCTCTGTATTTTCTTCTCAAGTTTTCTAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGAATGAGCACGTTCTCTGTATTTTCTTCTCAAGTTTTCTAGAAA  950

seq1  GCTCAGTTTTCTTCAAAACCTATAGTCTACTAAAGAGAAAAAATTAAGTT  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTTTCTTC-AAACCTATAGTCTACTAAAGAGAAAAAATTAAGTT  999

seq1  GGCTGTATTATTCTTAAGATATATTAGTGCCATATAATTACCAATGTAAT  1050
      |||| ||||||||||||||  |||||||||||||| |||| |||||||||
seq2  GGCTTTATTATTCTTAAGAATTATTAGTGCCATAT-ATTA-CAATGTAAT  1047

seq1  AATTAAAAGTCGTTTTAAAGTCCACAGCTTAAAAAGTCATGCATTTCTTT  1100
      |  | ||||||||||||||||| ||||||| |||||||||||| ||||||
seq2  A--TTAAAGTCGTTTTAAAGTCAACAGCTT-AAAAGTCATGCA-TTCTTT  1093

seq1  TATTTTTTATTTTATTTTATTTTTTTTATTTTTTTTGGTTTTTCGAGACA  1150
       |||||        | ||| |  | | |    | | |||||||| |||| 
seq2  AATTTT--------TATTAATAATCTGA----TCTCGGTTTTTCCAGAC-  1130

seq1  GGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAG  1200
       |||||||||| |||| |||||| ||||||||   | | |||  ||||||
seq2  -GGTTTCTCTG-GTAG-CCTGGCCGTCCTGGA---CTCCTTG--GACCAG  1172

seq1  GCTGGCCTCGAACTTAGAAATCCGCCTGCCT  1231
      ||  |||||||  |  |||||| ||||||||
seq2  GCATGCCTCGACAT--GAAATCGGCCTGCCT  1201