BAC Information

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BAC

Clone NameB6Ng01-071A09
Chromosome19 (Build37)
Map Location 10,157,583 - 10,377,875
singlet/doubletdoublet
Overlap geneFads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla
Upstream geneScgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3
Downstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071A09.bB6Ng01-071A09.g
ACCDH888842DH888843
length2521,211
definitionDH888842|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A09, 5' end.DH888843|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,377,624 - 10,377,875)(10,157,583 - 10,158,794)
sequence
gaattccagtctttggctgtgtgaccttgagctggtgttgttacctttaa
gagtcacttcacacagtgatcccagtggtcccagaatgaaggagactgtg
cgtggagaattctataagcagcaagaggctatacgaaggtcagggatttc
catcagggcaagagacacaaggtggttgggaatagaggcatggaatgtga
ctggggaggaagggagacataggttgagggtttgtcgtgtgaaattataa
ac
gaattctcaaaaatagtcaggacaggaacaactcaaatgtccacgaacca
aaaatacaatgtgatatccttacaacagaatggtttaggcaaactataaa
aaggaatggactgggtcagtaagagggctcagtgagtaaaggtgcctgcc
acaaagcctgacaccctgggttcaatccctgggactgactcatggtaaaa
agagagaacggacccctgaaagttgtccttggacctctacatacatgcta
tggtgccccttcccctaaataataaatacataaataaatgtaaaaaagct
tttctgtcagaagacaataggcccctaacacacgatataagcacagatga
tcctagaaacaccacacaaagcaaaagaagctgagaaaagaaaaagcaaa
aaaaaccacaaaattctactcctcatgatctcagtgatgtgaagcccggt
ggaagacacagttggtggcccaggtatccctggtcagtgagcagtgaaga
ggagacaggactggggtacgcggctaagtggctatgatttgtgggggttt
aagctgtgggtgataacgatgctctaaaattgtaggccagaggtgttaat
ggaatcttctgcaagcttgaaatgggcaaatggccctccgtgtatcttat
atatatatcaacaccactattttatccaaatgtttcccaaggatcaaagg
cctttgtgtatcacctgaaactgccagaggaaaatacagggaaacacttc
aaagtctatttttctgaaggggcttggcaagaacgagacagaatgggaga
caacctttgttggctattcatcagacagaagttacagccagaatgcataa
aaaggctacaatatgagacatcaagagaataatccattcataggtagaca
gatgaatttatgagtctgttgtcagagaagcaagtataaacgggccatct
atggaaaaaacactcaccatcctcagcaacagaggaaacgcaagtcacca
ctatttctgagactccatctcatccctgccaaaatagtcacatcaaggag
acaacaacagcttttgcacagaaattggcaagtgtgccacttgggtcttc
atgtgggttcccacaactggggtgtgtggctgttcctgaatctgttggca
ggtttgtggaattccctttccccttaaccaggcgctgtcttggcttcgtg
gggaagacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10377624_10377875
seq2: B6Ng01-071A09.b_48_299 (reverse)

seq1  GTTTCTAATTTCCCATGACAAACCCTCAACCTATGTCTCCCTTCCTCCCC  50
      |||| ||||||| || ||||||||||||||||||||||||||||||||||
seq2  GTTTATAATTTCACACGACAAACCCTCAACCTATGTCTCCCTTCCTCCCC  50

seq1  AGTCACATTCCATGCCTCTATTCCCAACCACCTTGTGTCTCTTGCCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATTCCATGCCTCTATTCCCAACCACCTTGTGTCTCTTGCCCTGA  100

seq1  TGGAAATCCCTGACCTTCGTATAGCCTCTTGCTGCTTATAGAATTCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCCCTGACCTTCGTATAGCCTCTTGCTGCTTATAGAATTCTCCA  150

seq1  CGCACAGTCTCCTTCATTCTGGGACCACTGGGATCACTGTGTGAAGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACAGTCTCCTTCATTCTGGGACCACTGGGATCACTGTGTGAAGTGAC  200

seq1  TCTTAAAGGTAACAACACCAGCTCAAGGTCACACAGCCAAAGACTGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGGTAACAACACCAGCTCAAGGTCACACAGCCAAAGACTGGAAT  250

seq1  TC  252
      ||
seq2  TC  252

seq1: chr19_10157583_10158794
seq2: B6Ng01-071A09.g_70_1280

seq1  GAATTCTCAAAAATAGTCAGGACAGGAACAACTCAAATGTCCACGAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAATAGTCAGGACAGGAACAACTCAAATGTCCACGAACCA  50

seq1  AAAATACAATGTGATATCCTTACAACAGAATGGTTTAGGCAAACTATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAATGTGATATCCTTACAACAGAATGGTTTAGGCAAACTATAAA  100

seq1  AAGGAATGGACTGGGTCAGTAAGAGGGCTCAGTGAGTAAAGGTGCCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGGACTGGGTCAGTAAGAGGGCTCAGTGAGTAAAGGTGCCTGCC  150

seq1  ACAAAGCCTGACACCCTGGGTTCAATCCCTGGGACTGACTCATGGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCTGACACCCTGGGTTCAATCCCTGGGACTGACTCATGGTAAAA  200

seq1  AGAGAGAACGGACCCCTGAAAGTTGTCCTTGGACCTCTACATACATGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAACGGACCCCTGAAAGTTGTCCTTGGACCTCTACATACATGCTA  250

seq1  TGGTGCCCCTTCCCCTAAATAATAAATACATAAATAAATGTAAAAAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCCTTCCCCTAAATAATAAATACATAAATAAATGTAAAAAAGCT  300

seq1  TTTCTGTCAGAAGACAATAGGCCCCTAACACACGATATAAGCACAGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCAGAAGACAATAGGCCCCTAACACACGATATAAGCACAGATGA  350

seq1  TCCTAGAAACACCACACAAAGCAAAAGAAGCTGAGAAAAGAAAAAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAAACACCACACAAAGCAAAAGAAGCTGAGAAAAGAAAAAGCAAA  400

seq1  AAAAACCACAAAATTCTACTCCTCATGATCTCAGTGATGTGAAGCCCGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCACAAAATTCTACTCCTCATGATCTCAGTGATGTGAAGCCCGGT  450

seq1  GGAAGACACAGTTGGTGGCCCAGGTATCCCTGGTCAGTGAGCAGTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACACAGTTGGTGGCCCAGGTATCCCTGGTCAGTGAGCAGTGAAGA  500

seq1  GGAGACAGGACTGGGGTACGCGGCTAAGTGGCTATGATTTGTGGGGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGGACTGGGGTACGCGGCTAAGTGGCTATGATTTGTGGGGGTTT  550

seq1  AAGCTGTGGGTGATAACGATGCTCTAAAATTGTAGGCCAGAGGTGTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGGGTGATAACGATGCTCTAAAATTGTAGGCCAGAGGTGTTAAT  600

seq1  GGAATCTTCTGCAAGCTTGAAATGGGCAAATGGCCCTCCGTGTATCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTTCTGCAAGCTTGAAATGGGCAAATGGCCCTCCGTGTATCTTAT  650

seq1  ATATATATCAACACCACTATTTTATCCAAATGTTTCCCAAGGATCAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATCAACACCACTATTTTATCCAAATGTTTCCCAAGGATCAAAGG  700

seq1  CCTTTGTGTATCACCTGAAACTGCCAGAGGAAAATACAGGGAAACACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGTATCACCTGAAACTGCCAGAGGAAAATACAGGGAAACACTTC  750

seq1  AAAGTCTATTTTTCTGAAGGGGCTTGGCAAGAACGAGACAGAATGGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTATTTTTCTGAAGGGGCTTGGCAAGAACGAGACAGAATGGGAGA  800

seq1  CAACCTTTGTTGGCTATTCATCAGACAGAAGTTACAGCCAGAATGCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTGTTGGCTATTCATCAGACAGAAGTTACAGCCAGAATGCATAA  850

seq1  AAAGGCTACAATATGAGACATCAAGAGAATAATCCATTCAATAGGTAGAC  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAGGCTACAATATGAGACATCAAGAGAATAATCCATTC-ATAGGTAGAC  899

seq1  AGATGAATTTATGAGTCTGTTGTCAGAGAAGCAAGTATAAACGGCCCATC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGATGAATTTATGAGTCTGTTGTCAGAGAAGCAAGTATAAACGGGCCATC  949

seq1  TATGGAAAAAACACTCACCATCCTCAGCAACAGAGGAAACGCAAGTCACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAAAAACACTCACCATCCTCAGCAACAGAGGAAACGCAAGTCACC  999

seq1  ACTA-TTCTGAGACTCCATCTCATCCCTGCCAAAATAGTCACCATCAAGG  1049
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTATTTCTGAGACTCCATCTCATCCCTGCCAAAATAGTCA-CATCAAGG  1048

seq1  AGACAAACAACAGCCTCTTGCACAGATA-TGGCAGGTGTGCCACTT-GGT  1097
      |||| |||||||| || ||||||||| | ||||| ||||||||||| |||
seq2  AGAC-AACAACAG-CTTTTGCACAGAAATTGGCAAGTGTGCCACTTGGGT  1096

seq1  CTTCATGTGGGTCCCCAACAACTGGTGTGTG-GGCTGTCCCTGAATCTGT  1146
      |||||||||||| ||| |||||||| ||||| |||||| |||||||||||
seq2  CTTCATGTGGGTTCCC-ACAACTGGGGTGTGTGGCTGTTCCTGAATCTGT  1145

seq1  T-GCAGGTCTGT-GAATCCCCTT--CCCCTAACCAGGCCGCCTTGTC-TG  1191
      | |||||| ||| |||| |||||  ||| |||||||| |||  |||| ||
seq2  TGGCAGGTTTGTGGAATTCCCTTTCCCCTTAACCAGG-CGC--TGTCTTG  1192

seq1  GCTTCGGTGGGAGAGGACAGA  1212
      ||||| ||||| || ||||||
seq2  GCTTC-GTGGG-GAAGACAGA  1211