BAC Information

Click to search

BAC

Clone NameB6Ng01-071E12
Chromosome19 (Build37)
Map Location 9,681,316 - 9,682,277
singlet/doubletsinglet
Overlap geneLOC623688
Upstream geneSlc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b
Downstream geneLOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071E12.bB6Ng01-071E12.g
ACCDH889023DH889024
length1,2411,002
definitionDH889023|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E12, 5' end.DH889024|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgtttagttctgagccccattttaaatgaggttatttgattt
tctggagtctaccttcttgagttctttatatatattagatattcgtaccc
tatctgatttaggataggtaaagatcctttcctaatctgttggtggccta
tttttcttattgacggtgtcttttgccttacaaaagctttgcaattttat
gaggtcctatttgtctatattcagtcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcgatgctttttccccac
tttctcctctataagtttcagtgtctcaggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggtgataggaatggatcaattcac
attcttctacatgttaactgccagttgtgacagcacaatttgttgaaaat
gctgtctttttttccagtggatggttttagctcccttgtcaaagatcaag
tgaccacatccaatatatataaataactcaagaaggtggactccagataa
tcaaataaccccataaaacatggggctcagagctaaacaaataattctca
cctgaggaataccgaatggctgacaagcacctgaaaaattgttcagtatt
cttaatcatcagggaaacacaaatcaaaataaacctgagattccacctca
caacagtcagaatggctaagatcaaaaaatcaggtgacaacagatgctgg
cgaggatggatgagaaacactactccattgttggtgggattacaagcttg
tacaaccactctggaaatcattcaggcagttcctcagaaaactggacata
gtactaccggaggatctcacaatacctctcctgggcatatatccagaaga
tgttccaacaggtaaaacgacaaatgttccactatgttcatagcagcctt
atttataatagccagaagctggaaagacccagatacccctcacatgaaat
ggatacagaaaatgtggtacatttacacatgagtactatctgctataaaa
gatgatttattaaattctatgcaatgattgactgagcatcatcgtgagtg
gaggtacccacctacaaagaactccacacaaatatgtacctcactgaaat
ggaattagccggaacttaaacccaagaattagaatatcggaacatggact
cagagaaatacacccaagttgtgaactttggacctcctctg
gaattctctgatgaatattaagatgggatttgtgggtaaagcatttgtca
catccagtacatttgtaaggtttttctcctgtatgaattttctgatgaat
actaagatgggatttttgtataaagcatttgtcacattcactgcatttgt
aaggtttctctcctgtatgaattctctgatgaataataagatgggatttg
tgggtaaacatttgtcacattcactacatttgtgaggtgtataatggggg
gattcaagaatcacattgctaagcttgttccatttagacttctcttgaat
attcatgtgttcatggacaatgtactggatgtcttcacacaagaccttca
catactttccacatatgcaatgattttccacaaacaacagattgttgtaa
ttctccaacatcacatccatgtacaatgtcctctgagcaaaactgagaca
ttcccattcctccagtgagaagtgaatggccacatccttgaaggttaaca
gaccctgtggcatgtttagcagagacacactcattctttttgttcttctc
ccaggttctcttgagtgtttatcagagaagaactcattctttttcttttt
ttttctcccagtttcaaatattggaactcttctggatcctttgtgagagt
cgccttgaccttaatcatccagtgctcttagtgttgatttacagttatgc
acatttggctgagcatatgaatacctggaaggtgacaggaccagctgctc
aatgtcctaggaggccagcacaacaactgctgcttaataaagttttcagg
ttccgcaaatactaggcactagtctccctccatgacttcctgacaacgag
gcagccaagatgcaagaagaaaccaagtcttctacaaacatacccacaaa
acacacaatgttcatttgatgtgcatagatttgattaatgactaggcttt
cctttattctggctattttaggatttcacctaaaaacatttctcacatgt
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9681316_9682277
seq2: B6Ng01-071E12.g_65_924 (reverse)

seq1  TCTTGGCTGCCTCGTGGTAAGGAACTCCTGGAGGGAGACTCATGCCTAGT  50
      ||||||||||||||| || ||||| || ||||||||||||  ||||||||
seq2  TCTTGGCTGCCTCGTTGTCAGGAAGTCATGGAGGGAGACTAGTGCCTAGT  50

seq1  ATTTGCTGAACCTGAAAACTTCCTTAAGCTGCAGTTGTTGTGTTGGCCTC  100
      |||||| ||||||||||||||  |||||| |||||||||||| |||||||
seq2  ATTTGCGGAACCTGAAAACTTTATTAAGCAGCAGTTGTTGTGCTGGCCTC  100

seq1  CTAGGATATTCAGCAGCTGGTCCTGTCACCTTCCAGATATTCATATGCTC  150
      |||||| ||| ||||||||||||||||||||||||| |||||||||||||
seq2  CTAGGACATTGAGCAGCTGGTCCTGTCACCTTCCAGGTATTCATATGCTC  150

seq1  AGCCAAATCTGCATAACTGTAAATCAACACTAAGAGCAGTGGAAGGTTAA  200
      |||||||| ||||||||||||||||||||||||||||| |||| | || |
seq2  AGCCAAATGTGCATAACTGTAAATCAACACTAAGAGCACTGGATGATT-A  199

seq1  AGGTAAAGGAGAGTCTCACAAAGGATCCA-----------------GAAC  233
      |||| |||| || ||||||||||||||||                 ||| 
seq2  AGGTCAAGGCGACTCTCACAAAGGATCCAGAAGAGTTCCAATATTTGAAA  249

seq1  CTGGGAGA-------------------AGTTC------------------  246
      ||||||||                   |||||                  
seq2  CTGGGAGAAAAAAAAAGAAAAAGAATGAGTTCTTCTCTGATAAACACTCA  299

seq1  -----------------AACAAAAAGAATGAGTGTGTCTCTGCTAAACAT  279
                       |||||||||||||||||||||||||||||||||
seq2  AGAGAACCTGGGAGAAGAACAAAAAGAATGAGTGTGTCTCTGCTAAACAT  349

seq1  GCTACAGGGTCTGTTAACCTTCAAGGACGTGGCTTTGGACTTCTCACTGG  329
      || |||||||||||||||||||||||| |||||  |  ||||||||||||
seq2  GCCACAGGGTCTGTTAACCTTCAAGGATGTGGCCATTCACTTCTCACTGG  399

seq1  AGGAATGGGAATCTCTCAGTTTTGCTCAGAGGACATTGTACATGGATGTG  379
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGGAATGTCTCAGTTTTGCTCAGAGGACATTGTACATGGATGTG  449

seq1  ATGTTGGAGAATTACAATAATCTGTTGTTTGTGGAAAATCATTGCAAATG  429
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  ATGTTGGAGAATTACAACAATCTGTTGTTTGTGGAAAATCATTGCATATG  499

seq1  TGGAATGTATGGGAAGGTCATGGATCAAGACAGCCAGTACATTGTTCTTG  479
      ||||| ||||| ||||||| ||  | |||||| |||||||||||| | ||
seq2  TGGAAAGTATGTGAAGGTCTTGTGTGAAGACATCCAGTACATTGTCCATG  549

seq1  AACACATGAATATTCAAGAGAAGTCTTCTAAATGGAACAAGCTTAGCAAT  529
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  AACACATGAATATTCAAGAGAAG---TCTAAATGGAACAAGCTTAGCAAT  596

seq1  GTGATTCCTGAATCCCCCCATTATGCACCTCACAAATGTACTGAATGTGA  579
      ||||||| |||||||||||||||| ||||||||||||||| |||||||||
seq2  GTGATTCTTGAATCCCCCCATTATACACCTCACAAATGTAGTGAATGTGA  646

seq1  CAAATGCTTTTCCCAGAAATCCCATCTTAATATTCATCAGAAAATTCATG  629
      |||||| ||| |||| ||||||||||||| ||||||||||| ||||||| 
seq2  CAAATG-TTTACCCACAAATCCCATCTTATTATTCATCAGAGAATTCATA  695

seq1  CAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGAA  679
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  CAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTATACAA  745

seq1  AAAGGCCATCTGAGAATTCATCAGAGAATTCATATAGGAGAGAAACCTTA  729
      |||  |||||| || |||||||||| |||||||| |||||| ||||||||
seq2  AAATCCCATCTTAGTATTCATCAGAAAATTCATACAGGAGAAAAACCTTA  795

seq1  CAAATGTAGTGAATGTGACAAATGCTTTACCCTACAATCCAATCTTAGTA  779
      |||||||| || ||||||||||||||||||||   ||||| |||||| ||
seq2  CAAATGTACTGGATGTGACAAATGCTTTACCCACAAATCCCATCTTAATA  845

seq1  TTCATCAGAAAATTCATACAGGAAAGAAACCTTACAAATGTAGTGAATGT  829
      ||||||||| |||||                                   
seq2  TTCATCAGAGAATTC-----------------------------------  860

seq1  GACAAATGCTTTACCCAACAATCCAATCTTAGTATTCATCAGAAAATTCA  879
                                                        
seq2  --------------------------------------------------  860

seq1  TACAGGAAAGAAACCTTACAAATGTAGTGAATGTGAGAAATGCTTTACTA  929
                                                        
seq2  --------------------------------------------------  860

seq1  AGAAACGCAATCTGAGAATTCATCAGAGAATTC  962
                                       
seq2  ---------------------------------  860