BAC Information

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BAC

Clone NameB6Ng01-071G13
Chromosome19 (Build37)
Map Location 24,604,282 - 24,762,921
singlet/doubletdoublet
Overlap genePip5k1b, E030010A14Rik, Pgm5
Upstream gene1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, LOC100042457, 2900009I07Rik
Downstream geneLOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071G13.bB6Ng01-071G13.g
ACCDH889117DH889118
length1,104699
definitionDH889117|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G13, 5' end.DH889118|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,604,282 - 24,605,403)(24,762,223 - 24,762,921)
sequence
gaattcagttgtacgcaaaatcaaaggacaagatctgctaagaattcaag
ctttctcagagtttttttgtttgtttgttttaatgttgtaattggatatg
ggctgtgatcatagatctaaaacatcccttaaagtaattttttaatccaa
aaataaatctcatctgctgacatggctcactttttttttttttttttttt
ttttttttgcaatcaatgttccttccagaaagccttgaaggacatttctc
tgatcgcagtggctttgcttacactggaagcagggccatctatgtcccag
ttcctggatgttggtatcaggtgcatcccatatcttattgtccttgtcca
ctattttctacaccctataatattgttttcaaaaatgacttgctttctgc
taggcatgggggaggctcatgcctgtaatcccaatattcaggaaactgag
gcaggaatattgttctaaattgaagtctagcctgggctacaaagtaggtt
tgaggccagcctgggctaacagaatgacgttccatctcaataaaacaaaa
gaaatcagaaataaaaaataaattttgttctcttatagtcttcatactgt
atccatatgcaatcaaatgcacaataaatagtgaacaaattgtaattttt
tgtattgtatttttccatttatttgaaatagatttcaccatagtacttta
tcttcaaataattctgtccttagggataagatgatttaatcatttctcta
aatgtcagacactgaaattattttaacctttcatcatcattattaacatt
gttctaacaacatttttttttctccagcaattttttttttctttgaaaat
agaaatcactggtcaggcatggtggtacatgctatatagtctcagcacct
gtaagctgaggcaggagattttactttcttgattctaagtaagcctgagt
taaaagggaaacctgtctcaaacaaacaaagcaaacgatgacaaattaac
tatggttcaagggatatccttaaatgaggtttttttttccccagttctgt
ggtgaatcacttaactagtcttggagacacaagattgttagtgtgcttaa
gcca
gaattcacatttgaataattaggacagtcatcttcatgattctcatagtt
ttgtcaggtttgtaatataaacgccatctcttggttaaagactcagatca
acggtaaaagtggggggtgggagttgagaaggaggcagatggcgcctgcc
tttgtggcctttgtgagtggcttggttttactttggtgaatctccctggg
agtatttaatctggagggggattttccccctcaaaagcatttttatggag
gcctgctttgttttttgatttctctccatattgagctctggattgtgatt
tatctataggcattttttcttgtcccccttgattgattttgggtacatta
gaatagagatagatatatgacatgacgtagggggagagactgagggttat
cagcacatcaggagcctggcagccacccgaggtgagaatggctaaccact
gtttgagaagccatgtgagacttgtacaacagaagatcacttccagaagg
aagcttggggtaacaaggttgggagaagctgatggtcacctaggaaacca
tgctagaggaaaacccaggaggaggaggagggtatgggcgatgagcctct
gtggagatagggccagagggtctgatgccagcgggttggataggaataga
aactgggtgaaagtcctctagcccgcactaactgtgagtgtgggatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24604282_24605403
seq2: B6Ng01-071G13.b_43_1146

seq1  GAATTCAGTTGTACGCAAAATCAAAGGACAAGATCTGCTAAGAATTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGTACGCAAAATCAAAGGACAAGATCTGCTAAGAATTCAAG  50

seq1  CTTTCTCAGAGTTTTTTTGTTTGTTTGTTTTAATGTTGTAATTGGATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGAGTTTTTTTGTTTGTTTGTTTTAATGTTGTAATTGGATATG  100

seq1  GGCTGTGATCATAGATCTAAAACATCCCTTAAAGTAATTTTTTAATCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGATCATAGATCTAAAACATCCCTTAAAGTAATTTTTTAATCCAA  150

seq1  AAATAAATCTCATCTGCTGACATGGCTCACTTTTTTTTTTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTCATCTGCTGACATGGCTCACTTTTTTTTTTTTTTTTTTTT  200

seq1  TTTTTTTTGCAATCAATGTTCCTTCCAGAAAGCCTTGAAGGACATTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGCAATCAATGTTCCTTCCAGAAAGCCTTGAAGGACATTTCTC  250

seq1  TGATCGCAGTGGCTTTGCTTACACTGGAAGCAGGGCCATCTATGTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCGCAGTGGCTTTGCTTACACTGGAAGCAGGGCCATCTATGTCCCAG  300

seq1  TTCCTGGATGTTGGTATCAGGTGCATCCCATATCTTATTGTCCTTGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGATGTTGGTATCAGGTGCATCCCATATCTTATTGTCCTTGTCCA  350

seq1  CTATTTTCTACACCCTATAATATTGTTTTCAAAAATGACTTGCTTTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTACACCCTATAATATTGTTTTCAAAAATGACTTGCTTTCTGC  400

seq1  TAGGCATGGGGGAGGCTCATGCCTGTAATCCCAATATTCAGGAAACTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATGGGGGAGGCTCATGCCTGTAATCCCAATATTCAGGAAACTGAG  450

seq1  GCAGGAATATTGTTCTAAATTGAAGTCTAGCCTGGGCTACAAAGTAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATATTGTTCTAAATTGAAGTCTAGCCTGGGCTACAAAGTAGGTT  500

seq1  TGAGGCCAGCCTGGGCTAACAGAGTGACGTTCCATCTCAATAAAACAAAA  550
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAGGCCAGCCTGGGCTAACAGAATGACGTTCCATCTCAATAAAACAAAA  550

seq1  GAAATCAGAAATAAAAAATAAATTTTGTTCTCTTATAGTCTTCATACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGAAATAAAAAATAAATTTTGTTCTCTTATAGTCTTCATACTGT  600

seq1  ATCCATATGCAATCAAATGCACAATAAATAGTGAACAAATTGTAATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATGCAATCAAATGCACAATAAATAGTGAACAAATTGTAATTTTT  650

seq1  TGTATTGTATTTTTCCATTTATTTGAAATAGATTTCACCATAGTACTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTATTTTTCCATTTATTTGAAATAGATTTCACCATAGTACTTTA  700

seq1  TCTTCAAATAATTCTGTCCTTAGGGATAAGATGATTTAATCATTTCTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAATAATTCTGTCCTTAGGGATAAGATGATTTAATCATTTCTCTA  750

seq1  AATGTCAGACACTGAAATTATTTTAACCTTTCATCATCATTATTAACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGACACTGAAATTATTTTAACCTTTCATCATCATTATTAACATT  800

seq1  GTTCTAACAACA-TTTTTTTTCTCCAGCAA-TTTTTTTTTCTTTGAAAAT  848
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  GTTCTAACAACATTTTTTTTTCTCCAGCAATTTTTTTTTTCTTTGAAAAT  850

seq1  AGAAATCACTGGTCAGGCATGGTGGTACATGCTATATAGTCTCAGCACCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCACTGGTCAGGCATGGTGGTACATGCTATATAGTCTCAGCACCT  900

seq1  GTAAGGCTGAGGCAGGAGGATTTTACTTTCTTGATTCTAAGGTAAGCCTG  948
      |||| |||||||||||| |||||||||||||||||||||| |||||||||
seq2  GTAA-GCTGAGGCAGGA-GATTTTACTTTCTTGATTCTAA-GTAAGCCTG  947

seq1  AGTTAAAAAGGGAAAACCTGTCTCAAACAAAACAAAGCAAAACGATGACA  998
      ||||||||  || ||||||||||||||| ||||||||| |||||||||| 
seq2  AGTTAAAA--GGGAAACCTGTCTCAAAC-AAACAAAGC-AAACGATGAC-  992

seq1  AAATTAACTATTGGTTCAAAGGGTATATCTTTTAAAAATGAGGGTTTTTT  1048
      |||||||||| ||||||||  || ||||| ||   ||||||||   ||||
seq2  AAATTAACTA-TGGTTCAA--GGGATATCCTT---AAATGAGG---TTTT  1033

seq1  TTTTTCCCCAGTTCTGGTGTTGAAATCACTATACTAGTCTT-GAGACACA  1097
      ||||||||||||||| ||| || |||||||  ||||||||| ||||||| 
seq2  TTTTTCCCCAGTTCT-GTGGTG-AATCACTTAACTAGTCTTGGAGACAC-  1080

seq1  AAGATTGTTAGAGTGCTTTAAGCCA  1122
      ||||||||||| |||| ||||||||
seq2  AAGATTGTTAGTGTGC-TTAAGCCA  1104

seq1: chr19_24762223_24762921
seq2: B6Ng01-071G13.g_68_766 (reverse)

seq1  CCTATACCACACTCACTGTTAGTGC-GGCTAGAGGACTCTTCACCCAGTT  49
      ||||| |||||||||| |||||||| |||||||||||| |||||||||||
seq2  CCTATCCCACACTCACAGTTAGTGCGGGCTAGAGGACT-TTCACCCAGTT  49

seq1  TCTCTTCCTTTCCAACCTGCTGGCATCAGACCCTCTGGCCCTATCTCCAC  99
      ||| ||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  TCTATTCCTATCCAACCCGCTGGCATCAGACCCTCTGGCCCTATCTCCAC  99

seq1  AGAGGCTCCTCGCCCATACCCTCCTCCTCCTCCTGGGTTTTCCTCTAGCA  149
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCATCGCCCATACCCTCCTCCTCCTCCTGGGTTTTCCTCTAGCA  149

seq1  TGGTTTCCTAGGTGACCATCAGCTTCTCCCAACCTTGTTACCCCAAGCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCTAGGTGACCATCAGCTTCTCCCAACCTTGTTACCCCAAGCTT  199

seq1  CCTTCTGGAAGTGATCTTCTGTTGTACAAGTCTCACATGGCTTCTCAAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGAAGTGATCTTCTGTTGTACAAGTCTCACATGGCTTCTCAAAC  249

seq1  AGTGGTTAGCCATTCTCACCTCGGGTGGCTGCCAGGCTCCTGATGTGCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAGCCATTCTCACCTCGGGTGGCTGCCAGGCTCCTGATGTGCTG  299

seq1  ATAACCCTCAGTCTCTCCCCCTACGTCATGTCATATATCTATCTCTATTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCTCAGTCTCTCCCCCTACGTCATGTCATATATCTATCTCTATTC  349

seq1  TAATGTACCCAAAATCAATCAAGGGGGACAAGAAAAAATGCCTATAGATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTACCCAAAATCAATCAAGGGGGACAAGAAAAAATGCCTATAGATA  399

seq1  AATCACAATCCAGAGCTCAATATGGAGAGAAATCAAAAAACAAAGCAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAATCCAGAGCTCAATATGGAGAGAAATCAAAAAACAAAGCAGGC  449

seq1  CTCCATAAAAATGCTTTTGAGGGGGAAAATCCCCCTCCAGATTAAATACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAAAAATGCTTTTGAGGGGGAAAATCCCCCTCCAGATTAAATACT  499

seq1  CCCAGGGAGATTCACCAAAGTAAAACCAAGCCACTCACAAAGGCCACAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAGATTCACCAAAGTAAAACCAAGCCACTCACAAAGGCCACAAA  549

seq1  GGCAGGCGCCATCTGCCTCCTTCTCAACTCCCACCCCCCACTTTTACCGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCGCCATCTGCCTCCTTCTCAACTCCCACCCCCCACTTTTACCGT  599

seq1  TGATCTGAGTCTTTAACCAAGAGATGGCGTTTATATTACAAACCTGACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGAGTCTTTAACCAAGAGATGGCGTTTATATTACAAACCTGACAA  649

seq1  AACTATGAGAATCATGAAGATGACTGTCCTAATTATTCAAATGTGAATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGAGAATCATGAAGATGACTGTCCTAATTATTCAAATGTGAATTC  699