BAC Information

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BAC

Clone NameB6Ng01-073B20
Chromosome19 (Build37)
Map Location 27,903,636 - 28,080,143
singlet/doubletdoublet
Overlap geneRfx3, LOC666997
Upstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612
Downstream geneLOC433235, Glis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073B20.bB6Ng01-073B20.g
ACCDH890340DH890341
length1,1571,135
definitionDH890340|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B20, 5' end.DH890341|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,078,981 - 28,080,143)(27,903,636 - 27,904,800)
sequence
gaattctctacacgatgtttccaaaatagtttttttccaaaaaaatttcc
tacttttgttacttaagaatcattttgatatgaccatctagccatccctt
tgttataggacttaagttttgtaatatttccccctaatctgctgtcatta
aatatttaatctcttttactcattaaaaaaatcaaaaccaagatatcaac
agaggcttggattaccatttgataatcagtttttttttaaaccatcctaa
tgctattccaaagctatgtcttagttttacaccatgggcttataatgggc
tccttttactgggtttacatgacttttctggcctagggatttttgtatta
agaaataatgttgtaacatttcattatctcctattcttccattgttggtt
tcattgttccatttatatcttctcttcacatgctacacatgaatgtattt
gaaaacatttggagctctttttgccaacttaatgctacataccatcttta
aatgtaatgacagtaaataatagactgttttaaaacatgaattcattagc
agttattctacaattttatatcttactgctcagcacccaaggagagtaag
actaccactgatacacttatttggcattgatgaataatttgctaacagta
cttaagttgtaactttgtaatattacccaggtaacttaaaatatgaagtc
ttacacaagaaaatcccatcttttgatctttttagatgttaaaaagtttc
aaataacatttttcaagttggctgtcctatgtagcattgttgtttgatag
ttttgactaataaagtgatttctcattttagagtgatttagttataatct
ttaaataaaaacatgatttattttcttttctgtgtagtccaggccagccc
ccaattcatgactctcttgcctcagtttctggatgtggggatggtacttg
tgcttgccactgtgctcagttagatgtgatagatttttcaagggaccttg
gaagaaagctaggagtgtgacttaatgaaaatggatttactatatcctct
caacattattatttctttgacaatttctatctttcttgacagaatgtaac
tttattgtattagtgatgtaatttgatggtttcaatttaaaagaattctc
tccttgg
gaattctctcagaaataaattgagaccaaaaagtgcaaacaaagaaaccc
ttttcctttctaaagctgtttttggttacaatatttcaacacagtaatag
aaaagcagttagaacaaatgggtatgtatttcccatgataaactgtgttt
tgttacagggatcttacctgtgtatctggaaatgaggaaggatacattag
tcttttctctctgacatttgctttttctctcagcataaatgcctactgat
gttaattattactgtatctcttcttttccagagattttttaaaaaagata
ttttctttatttacatttcaaatattatcccctttcctactttcccctct
gaaagtcccctatcacttccccctccccctgatccccaacccacccactg
ccattcctggtcctggcattcccctatactggggcatagaaccttcacag
gaccaagggcctctcctgccattgatgaccgactaggccatcctctgcta
catatgcagcttgagccataagttccaccatgtgttttctttgattggtg
gtatagctcaaaggagctctgggggtactggttagttcctattgatgctc
ctcctatcctttgtacagaaagtctttgaggctgtgattctaactaatgt
gccatcaatcaatgtacagaatggcatctctaacttaatgttttgtttat
gatccccatatgtcttagagagtcaatggattaatgtattttacctaact
gcttaaaatatgagttctcaatttgtaaaatatcgtagaaaatagaaatg
aagctccaaggctctaaattttcttttcatcatgtttgcttagaaaaatc
acttctgaaggaaaatcattgcttctgaaggaaagaacccatacatggca
agtccctccctcagatagtgttctctataatggaaatcctccacagttcc
tccatatatgcctgttttcacatcagacagagacaagtgaaagcttagag
ctaggagagtaaaatagaaccatcagaaagactcaatatttgcactttgg
taccttaccattcttttcagtgaactcaaataccaaataaagtggaactt
cagctacttctgcaagtcatagtttcccaacaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_28078981_28080143
seq2: B6Ng01-073B20.b_43_1199 (reverse)

seq1  CCAAGGA-AGAAATCTTTTAAA-TAAAACCACTCAAATTACATCACTAAT  48
      ||||||| |||| ||||||||| | |||||| ||||||||||||||||||
seq2  CCAAGGAGAGAATTCTTTTAAATTGAAACCA-TCAAATTACATCACTAAT  49

seq1  ACAATAAAGTTACATTTCTGTTCAAG-AAGATAGAAATTGTCAAGAAAAT  97
      |||||||||||||| ||||| ||||| |||||||||||||||||  ||||
seq2  ACAATAAAGTTACA-TTCTG-TCAAGAAAGATAGAAATTGTCAAAGAAAT  97

seq1  AATAATGTTTGAGAGTGATATAGTATATCCATTTTTCATTTAAGTCACAC  147
      ||||||| ||||||| ||||||||| ||||| |||||| |||||||||||
seq2  AATAATG-TTGAGAG-GATATAGTAAATCCA-TTTTCA-TTAAGTCACAC  143

seq1  TTCCTAGCTTTCTTCCAAGGTTCCTTTGAAAAATCTATCACATCTGAACT  197
       ||||||||||||||||||| ||| |||||||||||||||||||| ||||
seq2  -TCCTAGCTTTCTTCCAAGG-TCCCTTGAAAAATCTATCACATCT-AACT  190

seq1  GAGCACAGTGGCAAGGCACAAGTACCATCCCCACATCCAGGAAACTGAGG  247
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  GAGCACAGTGGCAA-GCACAAGTACCATCCCCACATCCA-GAAACTGAGG  238

seq1  CAAGAGAGTCATGAATTGGGGGCTGGCCTGGACTACACAGAAAAG-AAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAGAGAGTCATGAATTGGGGGCTGGCCTGGACTACACAGAAAAGAAAAT  288

seq1  AAATCATGTTTTTATTT-AAGATTATAACTAAATCACTCTAAAATGAGAA  345
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAATCATGTTTTTATTTAAAGATTATAACTAAATCACTCTAAAATGAGAA  338

seq1  ATCACTTTATTAGTCAAAACTATCAAACAACAATGCTACATAGGACAGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTATTAGTCAAAACTATCAAACAACAATGCTACATAGGACAGCC  388

seq1  AACTTG-AAAATGTTATTTGAAACTTTTTAACATCTAAAAAGATCAAAAG  444
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAAAATGTTATTTGAAACTTTTTAACATCTAAAAAGATCAAAAG  438

seq1  ATGGGATTTTCTTGTGTAAGACTTCATATTTTAAGTTACCTGGGTAATAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTTTCTTGTGTAAGACTTCATATTTTAAGTTACCTGGGTAATAT  488

seq1  TACAAAGTTACAACTTAAGTACTGTTAGCAAATTATTCATCAATGCCAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTTACAACTTAAGTACTGTTAGCAAATTATTCATCAATGCCAAA  538

seq1  TAAGTGTATCAGTGGTAGTCTTACTCTCCTTGGGTGCTGAGCAGTAAGAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTATCAGTGGTAGTCTTACTCTCCTTGGGTGCTGAGCAGTAAGAT  588

seq1  ATAAAATTGTAGAATAACTGCTAATGAATTCATGTTTTAAAACAGTCTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTGTAGAATAACTGCTAATGAATTCATGTTTTAAAACAGTCTAT  638

seq1  TATTTACTGTCATTACATTTAAAGATGGTATGTAGCATTAAGTTGGCAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTGTCATTACATTTAAAGATGGTATGTAGCATTAAGTTGGCAAA  688

seq1  AAGAGCTCCAAATGTTTTCAAATACATTCATGTGTAGCATGTGAAGAGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCCAAATGTTTTCAAATACATTCATGTGTAGCATGTGAAGAGAA  738

seq1  GATATAAATGGAACAATGAAACCAACAATGGAAGAATAGGAGATAATGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAATGGAACAATGAAACCAACAATGGAAGAATAGGAGATAATGAA  788

seq1  ATGTTACAACATTATTTCTTAATACAAAAATCCCTAGGCCAGAAAAGTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACAACATTATTTCTTAATACAAAAATCCCTAGGCCAGAAAAGTCA  838

seq1  TGTAAACCCAGTAAAAGGAGCCCATTATAAGCCCATGGTGTAAAACTAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCCAGTAAAAGGAGCCCATTATAAGCCCATGGTGTAAAACTAAG  888

seq1  ACATAGCTTTGGAATAGCATTAGGATGGTTTAAAAAAAAACTGATTATCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTTTGGAATAGCATTAGGATGGTTTAAAAAAAAACTGATTATCA  938

seq1  AATGGTAATCCAAGCCTCTGTTGATATCTTGGTTTTGATTTTTTTAATGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAATCCAAGCCTCTGTTGATATCTTGGTTTTGATTTTTTTAATGA  988

seq1  GTAAAAGAGATTAAATATTTAATGACAGCAGATTAGGGGGAAATATTACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGAGATTAAATATTTAATGACAGCAGATTAGGGGGAAATATTACA  1038

seq1  AAACTTAAGTCCTATAACAAAGGGATGGCTAGATGGTCATATCAAAATGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAGTCCTATAACAAAGGGATGGCTAGATGGTCATATCAAAATGA  1088

seq1  TTCTTAAGTAACAAAAGTAGGAAATTTTTTTGGAAAAAAACTATTTTGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGTAACAAAAGTAGGAAATTTTTTTGGAAAAAAACTATTTTGGA  1138

seq1  AACATCGTGTAGAGAATTC  1163
      |||||||||||||||||||
seq2  AACATCGTGTAGAGAATTC  1157

seq1: chr19_27903636_27904800
seq2: B6Ng01-073B20.g_67_1201

seq1  GAATTCTCTCAGAAATAAATTGAGACCAAAAAGTGCAAACAAAGAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGAAATAAATTGAGACCAAAAAGTGCAAACAAAGAAACCC  50

seq1  TTTTCCTTTCTAAAGCTGTTTTTGGTTACAATATTTCAACACAGTAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTCTAAAGCTGTTTTTGGTTACAATATTTCAACACAGTAATAG  100

seq1  AAAAGCAGTTAGAACAAATGGGTATGTATTTCCCATGATAAACTGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGTTAGAACAAATGGGTATGTATTTCCCATGATAAACTGTGTTT  150

seq1  TGTTACAGGGATCTTACCTGTGTATCTGGAAATGAGGAAGGATACATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGGGATCTTACCTGTGTATCTGGAAATGAGGAAGGATACATTAG  200

seq1  TCTTTTCTCTCTGACATTTGCTTTTTCTCTCAGCATAAATGCCTACTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCTCTGACATTTGCTTTTTCTCTCAGCATAAATGCCTACTGAT  250

seq1  GTTAATTATTACTGTATCTCTTCTTTTCCAGAGATTTTTTAAAAAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTATTACTGTATCTCTTCTTTTCCAGAGATTTTTTAAAAAAGATA  300

seq1  TTTTCTTTATTTACATTTCAAATATTATCCCCTTTCCTACTTTCCCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATTTACATTTCAAATATTATCCCCTTTCCTACTTTCCCCTCT  350

seq1  GAAAGTCCCCTATCACTTCCCCCTCCCCCTGATCCCCAACCCACCCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCCCTATCACTTCCCCCTCCCCCTGATCCCCAACCCACCCACTG  400

seq1  CCATTCCTGGTCCTGGCATTCCCCTATACTGGGGCATAGAACCTTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTGGTCCTGGCATTCCCCTATACTGGGGCATAGAACCTTCACAG  450

seq1  GACCAAGGGCCTCTCCTGCCATTGATGACCGACTAGGCCATCCTCTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGGCCTCTCCTGCCATTGATGACCGACTAGGCCATCCTCTGCTA  500

seq1  CATATGCAGCTTGAGCCATAAGTTCCACCATGTGTTTTCTTTGATTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCAGCTTGAGCCATAAGTTCCACCATGTGTTTTCTTTGATTGGTG  550

seq1  GTATAGCTCAAAGGAGCTCTGGGGGTACTGGTTAGTTCCTATTGATGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCTCAAAGGAGCTCTGGGGGTACTGGTTAGTTCCTATTGATGCTC  600

seq1  CTCCTATCCTTTGTACAGAAAGTCTTTGAGGCTGTGATTCTAACTAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATCCTTTGTACAGAAAGTCTTTGAGGCTGTGATTCTAACTAATGT  650

seq1  GCCATCAATCAATGTACAGAATGGCATCTCTAACTTAATGTTTTGTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAATCAATGTACAGAATGGCATCTCTAACTTAATGTTTTGTTTAT  700

seq1  GATCCCCATATGTCTTAGAGAGTCAATGGATTAATGTATTTTACCTAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCATATGTCTTAGAGAGTCAATGGATTAATGTATTTTACCTAACT  750

seq1  GCTTAAAATATGAGTTCTCAATTTGTAAAATATCGTAGAAAATAGAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAATATGAGTTCTCAATTTGTAAAATATCGTAGAAAATAGAAATG  800

seq1  AAGCTCCAAGGCTCTAAATTTTCTTTTCATCATGTTTGCTTAGAAAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCAAGGCTCTAAATTTTCTTTTCATCATGTTTGCTTAGAAAAATC  850

seq1  ACTTCTGAAGGAAAATCATTGCTTCTGAAGGAAAGAAACCCATAACATGG  900
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  ACTTCTGAAGGAAAATCATTGCTTCTGAAGGAAAG-AACCCAT-ACATGG  898

seq1  CAAGTCCCTCCCTCAGATAAGTGTTCTCTATAATGGAAATCCTCCACAGT  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAGTCCCTCCCTCAGAT-AGTGTTCTCTATAATGGAAATCCTCCACAGT  947

seq1  TCCCTCCCATATATGCCTGTTTTCACAATCAAGAACAAGAGACAAGTGGA  1000
      |||   |||||||||||||||||||| ||| |||   |||||||||| ||
seq2  TCC--TCCATATATGCCTGTTTTCAC-ATC-AGA--CAGAGACAAGT-GA  990

seq1  AAGCTTAGAAGGCTAGGAAGAGGTAAAATAGAACCATCAGAAAGAACTTC  1050
      |||||||||  |||||| ||| |||||||||||||||||||||| |||  
seq2  AAGCTTAGA--GCTAGG-AGA-GTAAAATAGAACCATCAGAAAG-ACT--  1033

seq1  AAATATGTGCACTTTGTAACCTTACCAAATCCTTTTCAGTGAACTCAAAA  1100
       ||||| |||||||||  ||||||||  || |||||||||||||||||| 
seq2  CAATATTTGCACTTTGGTACCTTACC--ATTCTTTTCAGTGAACTCAAA-  1080

seq1  TCACAAAATAAAGTGGAGACTTCAGCCTTAACTTCTGCAAGTCAAATAGT  1150
        || |||||||||||| ||||||||    |||||||||||||  |||||
seq2  -TACCAAATAAAGTGGA-ACTTCAGC---TACTTCTGCAAGTC--ATAGT  1123

seq1  TTTCACAAAACAACT  1165
      ||   |  |||||||
seq2  TT---CCCAACAACT  1135