BAC Information

Click to search

BAC

Clone NameB6Ng01-073P17
Chromosome19 (Build37)
Map Location 4,807,725 - 4,954,737
singlet/doubletdoublet
Overlap geneRbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3
Upstream geneSuv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4
Downstream geneMrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073P17.bB6Ng01-073P17.g
ACCDH890955DH890956
length680941
definitionDH890955|Mus musculus domesticus DNA, BAC clone: B6Ng01-073P17, 5' end.DH890956|Mus musculus domesticus DNA, BAC clone: B6Ng01-073P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,807,725 - 4,808,404)(4,953,793 - 4,954,737)
sequence
gaattccaagacaaccagtgctgcacagtgagaccacagggggaggcagg
gggagggggagcccactgcaacaatgaaaagaaattcaagaactggatag
tgtatatatgacaagtatgaggcccttggtttgactgcaccactacacca
caaaaaaataaataaaagcaagaaggaggggagaaaataagagagagggg
aaagaggaacaatactttcaaatgagttagttcaaatggctacccaaatg
agctctcatgagggagggcctctgatacaaatagtcattttctatcagga
agttaagtttctaagcctgatattagaagggagtgtgaggtgggtatgga
ggtacacacctgaaataccagctcctaagaggtagaggcaattgagatca
ggacttcaagaccatcctcagctacacagcaagttcagcctggactgtgt
aagacactgtttcaaaaaaggaagggagactggaaagatgcagcctttga
gaacacctgctactgttgtagataatccagaatcatttccccgaactcca
ccatccctcctgaccttcctgacctctgtgggcatctagcatacacgcaa
tacacatacataaatactggcactcatacgcataaaatagaatagatcta
taaggggtgtgtgtgtgtacagaagatgta
gaattctcgctgccagagcaccttccatgaggagactgcagcctgcatga
tgatggctgatggagggcgggccacacccagctggggtgtttacacgtgc
atgtatctccttgctcctctatttcaactttaatatcatttcaggactca
aaatatagacttgagggcttcactggatttctttgtccctatccccagtg
tggctaacattgaataaatctcctttgtctttaattggtttatttaggat
gggtggctggacctaacttgaggcacagcctgtgacccctgtgaactgtc
aaataaactaaaatgagagaaaaataaactaggtaagataataaacattt
gtgattttatttaatgtgtctagtggtactggagcttgaatttaggcctc
accatgtaccaggcaaacagtccatcactgggttacgtctccatctttct
ttttttttctttttttttttttttcgagacagggtttctctgtatagccc
tggctgtcctggaactcactttatagaccaggctggcctcgaactcaaaa
atccacctgcttctgcctcctgagtgctgggattaaaggcgtgcgccacc
aactcccggccatctttcttttctatgttttatcgtgagactcactctta
ctaaatttcccagagtggcctggagcatcctctctatctcaggcaggcat
ggaattgccatcctcctgcttcagcctctcatgtgagtaacttgggacgg
caacgctgtgccgctggggctgtcgaagtgtttgtatttcagccataaaa
attgttgttttaagacaaggtctcacgatgcccacccaggctggtcttga
acttacagagacacacctgcttctgccttctaagtgctgagattaaagta
tacacaaagtcctgtttgccagtttgtttgttgttttagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4807725_4808404
seq2: B6Ng01-073P17.b_46_725

seq1  GAATTCCAAGACAACCAGTGCTGCACAGTGAGACCACAGGGGGAGGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACAACCAGTGCTGCACAGTGAGACCACAGGGGGAGGCAGG  50

seq1  GGGAGGGGGAGCCCACTGCAACAATGAAAAGAAATTCAAGAACTGGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGAGCCCACTGCAACAATGAAAAGAAATTCAAGAACTGGATAG  100

seq1  TGTATATATGACAAGTATGAGGCCCTTGGTTTGACTGCACCACTACACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATGACAAGTATGAGGCCCTTGGTTTGACTGCACCACTACACCA  150

seq1  CAAAAAAATAAATAAAAGCAAGAAGGAGGGGAGAAAATAAGAGAGAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATAAATAAAAGCAAGAAGGAGGGGAGAAAATAAGAGAGAGGGG  200

seq1  AAAGAGGAACAATACTTTCAAATGAGTTAGTTCAAATGGCTACCCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAACAATACTTTCAAATGAGTTAGTTCAAATGGCTACCCAAATG  250

seq1  AGCTCTCATGAGGGAGGGCCTCTGATACAAATAGTCATTTTCTATCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCATGAGGGAGGGCCTCTGATACAAATAGTCATTTTCTATCAGGA  300

seq1  AGTTAAGTTTCTAAGCCTGATATTAGAAGGGAGTGTGAGGTGGGTATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGTTTCTAAGCCTGATATTAGAAGGGAGTGTGAGGTGGGTATGGA  350

seq1  GGTACACACCTGAAATACCAGCTCCTAAGAGGTAGAGGCAATTGAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACACCTGAAATACCAGCTCCTAAGAGGTAGAGGCAATTGAGATCA  400

seq1  GGACTTCAAGACCATCCTCAGCTACACAGCAAGTTCAGCCTGGACTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCAAGACCATCCTCAGCTACACAGCAAGTTCAGCCTGGACTGTGT  450

seq1  AAGACACTGTTTCAAAAAAGGAAGGGAGACTGGAAAGATGCAGCCTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACTGTTTCAAAAAAGGAAGGGAGACTGGAAAGATGCAGCCTTTGA  500

seq1  GAACACCTGCAACTGTTGTAGAGAATCCAGAATCAGTTCCCCGAACTCCA  550
      |||||||||| ||||||||||| |||||||||||| ||||||||||||||
seq2  GAACACCTGCTACTGTTGTAGATAATCCAGAATCATTTCCCCGAACTCCA  550

seq1  CCATCCCTCCTGACCATCCTGACCTCTGTGGGCATCAAGCATACACGCAA  600
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  CCATCCCTCCTGACCTTCCTGACCTCTGTGGGCATCTAGCATACACGCAA  600

seq1  TACACATACATAAATACTGGCACTCATACGCATAAAATAGAATAGATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATACATAAATACTGGCACTCATACGCATAAAATAGAATAGATCTA  650

seq1  AAAGGGGTGTGTGTGTGTACAGAAGATGTA  680
       |||||||||||||||||||||||||||||
seq2  TAAGGGGTGTGTGTGTGTACAGAAGATGTA  680

seq1: chr19_4953793_4954737
seq2: B6Ng01-073P17.g_70_1010 (reverse)

seq1  GTCTAAAAACAAACAAACAAACTGGCAAAACTGAACTTTTGTGTATACTT  50
      ||||||||   ||||||||||||||| |||| | || |||||||||||||
seq2  GTCTAAAA--CAACAAACAAACTGGC-AAACAGGAC-TTTGTGTATACTT  46

seq1  TAATCTCAGCACTTAGAAGGCAGAAGCAGGTGTGTCTCTGTAAGTTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAGCACTTAGAAGGCAGAAGCAGGTGTGTCTCTGTAAGTTCAAG  96

seq1  ACCAGCCTGGGT-GGCATCGTGAGACCTTGTCTTAAAACAACAATTTTTA  149
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTGGGTGGGCATCGTGAGACCTTGTCTTAAAACAACAATTTTTA  146

seq1  TGACTGAAATAACAAACACTTCGACAGCCCCAGCGGCACAGCGTTGCCGT  199
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAAAT-ACAAACACTTCGACAGCCCCAGCGGCACAGCGTTGCCGT  195

seq1  CCC-AGTTACTCACCTGAGAGGCTGAAGCAGGAGGATGGCAATTCCATGC  248
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTACTCACATGAGAGGCTGAAGCAGGAGGATGGCAATTCCATGC  245

seq1  CTGCCTGAGATAGAGAGGATGCTCCAGGCCACTCTGGGAAATTTAGTAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGAGATAGAGAGGATGCTCCAGGCCACTCTGGGAAATTTAGTAAG  295

seq1  AGTGAGTCTCACGATAAAACATAGAAAAGAAAGATGGCCGGGAGTTGGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCTCACGATAAAACATAGAAAAGAAAGATGGCCGGGAGTTGGTG  345

seq1  GCGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAAGCAGGTGGATTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAAGCAGGTGGATTTTT  395

seq1  GAGTTCGAGGCCAGCCTGGTCTATAAAGTGAGTTCCAGGACAGCCAGGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCAGCCTGGTCTATAAAGTGAGTTCCAGGACAGCCAGGGC  445

seq1  TATACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAGAAAAAAAAAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAGAAAAAAAAAGAA  495

seq1  AGATGGAGACGTAACCCAGTGATGGACTGTTTGCCTGGTACATGGTGAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGACGTAACCCAGTGATGGACTGTTTGCCTGGTACATGGTGAGG  545

seq1  CCTAAATTCAAGCTCCAGTACCACTAGACACATTAAATAAAATCACAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATTCAAGCTCCAGTACCACTAGACACATTAAATAAAATCACAAAT  595

seq1  GTTTATTATCTTACCTAGTTTATTTTTCTCTCATTTTAGTTTATTTGACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTATCTTACCTAGTTTATTTTTCTCTCATTTTAGTTTATTTGACA  645

seq1  GTTCACAGGGGTCACAGGCTGTGCCTCAAGTTAGGTCCAGCCACCCATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAGGGGTCACAGGCTGTGCCTCAAGTTAGGTCCAGCCACCCATCC  695

seq1  TAAATAAACCAATTAAAGACAAAGGAGATTTATTCAATGTTAGCCACACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAACCAATTAAAGACAAAGGAGATTTATTCAATGTTAGCCACACT  745

seq1  GGGGATAGGGACAAAGAAATCCAGTGAAGCCCTCAAGTCTATATTTTGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAGGGACAAAGAAATCCAGTGAAGCCCTCAAGTCTATATTTTGAG  795

seq1  TCCTGAAATGATATTAAAGTTGAAATAGAGGAGCAAGGAGATACATGCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAATGATATTAAAGTTGAAATAGAGGAGCAAGGAGATACATGCAC  845

seq1  GTGTAAACACCCCAGCTGGGTGTGGCCCGCCCTCCATCAGCCATCATCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAACACCCCAGCTGGGTGTGGCCCGCCCTCCATCAGCCATCATCAT  895

seq1  GCAGGCTGCAGTCTCCTCATGGAAGGTGCTCTGGCAGGCGAGAATTC  945
      |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCAGGCTGCAGTCTCCTCATGGAAGGTGCTCTGGCA-GCGAGAATTC  941