BAC Information

Click to search

BAC

Clone NameB6Ng01-074J20
Chromosome19 (Build37)
Map Location 34,149,852 - 34,299,164
singlet/doubletdoublet
Overlap geneLipn, Ankrd22, Stambpl1
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462
Downstream geneActa2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074J20.bB6Ng01-074J20.g
ACCDH891408DH891409
length1,0021,050
definitionDH891408|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J20, 5' end.DH891409|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,298,576 - 34,299,164)(34,149,852 - 34,150,907)
sequence
gaattccaagactagagagataagatgagcagccatgcataacatgcgct
tcctacctaagtgagttcaggccaaagcaaaacacatttccttcatcaga
taatcagaaccaaaatacagtttgttctaaaaatacactagcccaaaatg
tataaaagaaggttaaagtttctaatggagagagatagaaatggcaaccg
ccctgcttcaatcactgcaaagttgtgtacatatattgatttaacatcct
ttgccctataaatatgtttttaaaagattctgttggaacttgtcaaagac
atttttttttcaaaactccaacatctcttcatgacaaaagtctttcagag
agcagagctggagggaaagaaattagctgagcttaagacaagtggatatg
agaaaccaagagccatcactataaacagagaaacttgaagctttcccact
aagatcaggggttagcgcttctataaaacatgatgcttgatgttctacct
agaacagtaagatgggaggatgaaataagagatacaaataggaacaaaag
aagtccaggtctctctgtttgcaaatgattttattcatgagaaactacaa
ggactacacaggaaacgtgtagagaggacgacaattttcagaaaagtggc
aggctactaaattaaccttaaaattaatagccttcctatataccaacaac
acacagaaacaggacagacacctggaaaacaatcccattcacagccgtag
ctttaaaaatacctggaatcaatgtacaggatgtaaacttgaaaacacta
aaaaaaagaaagaaagaaaagaaatcaaggaagacacagaagatagggag
aacgctcatgcatgaggagcagtaggattcatattgtgaaaagagtcatg
caagtcaaaagacatcatcagattcaatgaaatattcatcaaaaatctga
tgcacttcttcacagaaattgaaagaagcaattttaaaacttcatacgaa
ag
gaattcagatgaaataaatacagagtcttgaatatgttactcatcttcca
ctgaatgtctttaggagacttagtcacgtgacgttgtgacattttagatt
aggtaaaacagcaagaaaaattggatcttataatatttccatattgcata
agtataaattatcaccattcctattaatcaccacaaagagaggctgacct
gttctttatgcttacaggcatttttacaagcctgggagaggaagtgagca
ggagagaacacagataaaaagattatcaacgtaccaataagagaaccaaa
ggaagccagacaattacaccataattatatcatatccagtacttcttgag
catttgctatgtttaggggtctgtgttcaatacttttcctcccttgatct
cccatacaaccccactgatgcagaacatagattcagaggaggttggttag
accgcaccaatgagatgtagagactcttgcggggggggggggcaatttaa
aaggagaaagatgaaacttgcatctgggaaagtgggcagaacttacattc
ttactgctcttcaaagaaaatacagtaaatgagaccattataccctgata
gaacctgttacacttgggcatgaacatgcttagttaaagacttcttgcat
ttggggcagaaggttgtttgtttgtttgtttttcaagacagggtttctct
gtatagctctgactgtcctggaactcactctgtagaccaggctggcctcg
aactcagaaatctgcctgcctctgcctcccatgtgctgggattaaaggtg
tacgccaccactgccctgttccatatgtgtttgtgagtgtgtctccagca
gagactgaacaatgcgtctggggaaagtaaactacccagataccactgta
gcatcctcagatgcatactgatccctagccttatcctcaaggttataaat
gggcacatggccactgctgaggacagcaatggaagacacttggtctttct
gggtatcactgtgatccaggaaacatcttcacctttggagctggttacag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34298576_34299164
seq2: B6Ng01-074J20.b_46_634 (reverse)

seq1  CATGAATAAAATCATTTGCAAACAGAGAGACCTGGACTTCTTTTGTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAAAATCATTTGCAAACAGAGAGACCTGGACTTCTTTTGTTCCT  50

seq1  ATTTGTATCTCTTATTTCATCCTCCCATCTTACTGTTCTAGGTAGAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATCTCTTATTTCATCCTCCCATCTTACTGTTCTAGGTAGAACAT  100

seq1  CAAGCATCATGTTTTATAGAAGCGCTAACCCCTGATCTTAGTGGGAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATCATGTTTTATAGAAGCGCTAACCCCTGATCTTAGTGGGAAAGC  150

seq1  TTCAAGTTTCTCTGTTTATAGTGATGGCTCTTGGTTTCTCATATCCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTCTCTGTTTATAGTGATGGCTCTTGGTTTCTCATATCCACTT  200

seq1  GTCTTAAGCTCAGCTAATTTCTTTCCCTCCAGCTCTGCTCTCTGAAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAGCTCAGCTAATTTCTTTCCCTCCAGCTCTGCTCTCTGAAAGAC  250

seq1  TTTTGTCATGAAGAGATGTTGGAGTTTTGAAAAAAAAATGTCTTTGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCATGAAGAGATGTTGGAGTTTTGAAAAAAAAATGTCTTTGACAA  300

seq1  GTTCCAACAGAATCTTTTAAAAACATATTTATAGGGCAAAGGATGTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAACAGAATCTTTTAAAAACATATTTATAGGGCAAAGGATGTTAAA  350

seq1  TCAATATATGTACACAACTTTGCAGTGATTGAAGCAGGGCGGTTGCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATATGTACACAACTTTGCAGTGATTGAAGCAGGGCGGTTGCCATT  400

seq1  TCTATCTCTCTCCATTAGAAACTTTAACCTTCTTTTATACATTTTGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCTCTCCATTAGAAACTTTAACCTTCTTTTATACATTTTGGGCT  450

seq1  AGTGTATTTTTAGAACAAACTGTATTTTGGTTCTGATTATCTGATGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTTTTAGAACAAACTGTATTTTGGTTCTGATTATCTGATGAAGG  500

seq1  AAATGTGTTTTGCTTTGGCCTGAACTCACTTAGGTAGGAAGCGCATGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTTTTGCTTTGGCCTGAACTCACTTAGGTAGGAAGCGCATGTTA  550

seq1  TGCATGGCTGCTCATCTTATCTCTCTAGTCTTGGAATTC  589
      |||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGCTGCTCATCTTATCTCTCTAGTCTTGGAATTC  589

seq1: chr19_34149852_34150907
seq2: B6Ng01-074J20.g_65_1114

seq1  GAATTCAGATGAAATAAATACAGAGTCTTGAATATGTTACTCATCTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGAAATAAATACAGAGTCTTGAATATGTTACTCATCTTCCA  50

seq1  CTGAATGTCTTTAGGAGACTTAGTCACGTGACGTTGTGACATTTTAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTCTTTAGGAGACTTAGTCACGTGACGTTGTGACATTTTAGATT  100

seq1  AGGTAAAACAGCAAGAAAAATTGGATCTTATAATATTTCCATATTGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAACAGCAAGAAAAATTGGATCTTATAATATTTCCATATTGCATA  150

seq1  AGTATAAATTATCACCATTCCTATTAATCACCACAAAGAGAGGCTGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAATTATCACCATTCCTATTAATCACCACAAAGAGAGGCTGACCT  200

seq1  GTTCTTTATGCTTACAGGCATTTTTACAAGCCTGGGAGAGGAAGTGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTATGCTTACAGGCATTTTTACAAGCCTGGGAGAGGAAGTGAGCA  250

seq1  GGAGAGAACACAGATAAAAAGATTATCAACGTACCAATAAGAGAACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAACACAGATAAAAAGATTATCAACGTACCAATAAGAGAACCAAA  300

seq1  GGAAGCCAGACAATTACACCATAATTATATCATATCCAGTACTTCTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAGACAATTACACCATAATTATATCATATCCAGTACTTCTTGAG  350

seq1  CATTTGCTATGTTTAGGGGTCTGTGTTCAATACTTTTCCTCCCTTGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTATGTTTAGGGGTCTGTGTTCAATACTTTTCCTCCCTTGATCT  400

seq1  CCCATACAACCCCACTGATGCAGAACATAGATTCAGAGGAGGTTGGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACAACCCCACTGATGCAGAACATAGATTCAGAGGAGGTTGGTTAG  450

seq1  ACCGCACCAATGAGATGTAGAGACTCTTGCGGGGGGGGGGGGCAATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCACCAATGAGATGTAGAGACTCTTGCGGGGGGGGGGGGCAATTTAA  500

seq1  AAGGAGAAAGATGAAACTTGCATCTGGGAAAGTGGGCAGAACTTACATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAAGATGAAACTTGCATCTGGGAAAGTGGGCAGAACTTACATTC  550

seq1  TTACTGCTCTTCAAAGAAAATACAGTAAATGAGACCATTATACCCTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTCTTCAAAGAAAATACAGTAAATGAGACCATTATACCCTGATA  600

seq1  GAACCTGTTACACTTGGGCATGAACATGCTTAGTTAAAGACTTCTTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTTACACTTGGGCATGAACATGCTTAGTTAAAGACTTCTTGCAT  650

seq1  TTGGGGCAGAAGGTTGTTTGTTTGTTTGTTTTTCAAGACAGGGTTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAGAAGGTTGTTTGTTTGTTTGTTTTTCAAGACAGGGTTTCTCT  700

seq1  GTATAGCTCTGACTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCTCTGACTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCG  750

seq1  AACTCAGAAATCTGCCTGCCTCTGCCTCCCATGTGCTGGGATTAAAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATCTGCCTGCCTCTGCCTCCCATGTGCTGGGATTAAAGGTG  800

seq1  TACGCCACCACTGCCCTGTTCCATATGTGTTTGTGAGTGTGTCTCCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCCACCACTGCCCTGTTCCATATGTGTTTGTGAGTGTGTCTCCAGCA  850

seq1  GAGACTGAACAATGCGTCTTGGGAAAGTAAACTACCCAGATACCCACTGT  900
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  GAGACTGAACAATGCGTCTGGGGAAAGTAAACTACCCAGATA-CCACTGT  899

seq1  AGCATCCTCAGATGCAATACTGATCCCTAGCCTTATCCTCAAGGTTATAA  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCATCCTCAGATGC-ATACTGATCCCTAGCCTTATCCTCAAGGTTATAA  948

seq1  ATGGGCACAATGCCACTGCTGAGGACAGCAAATGGAGACACCTTGGCCTT  1000
      |||||||||  ||||||||||||||||||||  | ||||| ||||| |||
seq2  ATGGGCACATGGCCACTGCTGAGGACAGCAATGGAAGACA-CTTGGTCTT  997

seq1  TCT-GGTATCACTGTGGATCCAAGGAAAACATCTTCACTTTGGGAAGCTG  1049
      ||| ||||||||||| ||||||  | |||||||||||| || || |||||
seq2  TCTGGGTATCACTGT-GATCCA--GGAAACATCTTCACCTTTGG-AGCTG  1043

seq1  GTAACAG  1056
      || ||||
seq2  GTTACAG  1050