BAC Information

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BAC

Clone NameB6Ng01-075F04
Chromosome9 (Build37)19 (Build37)
Map Location 48,764,326 - 48,765,07231,269,086 - 31,269,599
singlet/doubletsingletsinglet
Overlap geneHtr3b
Upstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a
Downstream geneUsp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075F04.bB6Ng01-075F04.g
ACCDH891913DH891914
length747492
definitionDH891913|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F04, 5' end.DH891914|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,764,326 - 48,765,072)(31,269,086 - 31,269,599)
sequence
gaattctgaatggatcatcatgcctataatcaatcctaccactcaggagg
ctgatacaggaaggatggccaccagttccaggctcatctaggctggataa
tgaactccatgcaggcctgggctacatagcaaaattctgatctcaaaagg
aaaaaaaaaaaaggagattctgcatattatcactaagatctaaatagaaa
agaaaaatgggtaggaatacagctcagagtcccagcactgcataaaacca
ggtgtggtggcacatgcctgtcatcccaacacttggaaggtagagacaga
agaatcatgagttgaaggacagccttggctacatggaaaattcaaagcta
gcctgagctacatgaggccctatcacaaataactaaagcaaaatattaaa
aatgcttaaaatatcttattcctttgagtatttatttaaaatgtgtgtta
cccgagataggggagggcataaggcacagaagaataaaaacagcgctcta
gaaaccaacagggcataatgttggtaaatgtacaagataatgttaattaa
aatgggtttttaaaccagtaagaaaaatcaagagcaatgacctagaatac
tactgagcaacagaagggcatgggctgtccttatgcacagcaggggtgcc
tcagagaagtgatgtggaggggcagctcatctgtggctgccgcatccact
gtctctttgtagtggactaaatgaacttgggagggaggagggaggga
aatctggaggctcctcagaaaattggaaatagatctacctgaagacccag
ctatatcatcttgggaatatacccaaaacatgccccaccatgccacaggg
ggatgtgttccactatgttcatagaggccttatttgtgatagccagaagc
tggaaacaccctagatgtcccatgacagaagaatggatacaaaaaatgtg
gtttatttacaaaatcgaatactactcagctattaagaacaaggacatcc
tgacttttacaggcaaatggatggaactagaaaatatcatcctgagtgag
gtaactcaaatccaaacagatatgcatggtatgtactcactaataagtag
gtattagccaaaaagaaaaaagaaaaaaaaccacacagaatacacaagat
acagtccacagaattcaaaaagctcaacaagctgaagtgcccaagtgagg
acgcctcggtcccacttgggagaagaaagcaatcacaagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_48764326_48765072
seq2: B6Ng01-075F04.b_48_794

seq1  GAATTCTGAATGGATCATCATGCCTATAATCAATCCTACCACTCAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAATGGATCATCATGCCTATAATCAATCCTACCACTCAGGAGG  50

seq1  CTGATACAGGAAGGATGGCCACCAGTTCCAGGCTCATCTAGGCTGGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACAGGAAGGATGGCCACCAGTTCCAGGCTCATCTAGGCTGGATAA  100

seq1  TGAACTCCATGCAGGCCTGGGCTACATAGCAAAATTCTGATCTCAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCCATGCAGGCCTGGGCTACATAGCAAAATTCTGATCTCAAAAGG  150

seq1  AAAAAAAAAAAAGGAGATTCTGCATATTATCACTAAGATCTAAATAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGGAGATTCTGCATATTATCACTAAGATCTAAATAGAAA  200

seq1  AGAAAAATGGGTAGGAATACAGCTCAGAGTCCCAGCACTGCATAAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGGGTAGGAATACAGCTCAGAGTCCCAGCACTGCATAAAACCA  250

seq1  GGTGTGGTGGCACATGCCTGTCATCCCAACACTTGGAAGGTAGAGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTGGCACATGCCTGTCATCCCAACACTTGGAAGGTAGAGACAGA  300

seq1  AGAATCATGAGTTGAAGGACAGCCTTGGCTACATGGAAAATTCAAAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATGAGTTGAAGGACAGCCTTGGCTACATGGAAAATTCAAAGCTA  350

seq1  GCCTGAGCTACATGAGGCCCTATCACAAATAACTAAAGCAAAATATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGCTACATGAGGCCCTATCACAAATAACTAAAGCAAAATATTAAA  400

seq1  AATGCTTAAAATATCTTATTCCTTTGAGTATTTATTTAAAATGTGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTAAAATATCTTATTCCTTTGAGTATTTATTTAAAATGTGTGTTA  450

seq1  CCCGAGATAGGGGAGGGCATAAGGCACAGAAGAATAAAAACAGCGCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGATAGGGGAGGGCATAAGGCACAGAAGAATAAAAACAGCGCTCTA  500

seq1  GAAACCAACAGGGCATAATGTTGGTAAATGTACAAGATAATGTTAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAACAGGGCATAATGTTGGTAAATGTACAAGATAATGTTAATTAA  550

seq1  AATGGGTTTTTAAACCAGTAAGAAAAATCAAGAGCAATGACCTAGAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTTTTTAAACCAGTAAGAAAAATCAAGAGCAATGACCTAGAATAC  600

seq1  TACTGAGCAACAGAAGGGCATGGGCTGTCCTTATGCACAGCAGGGGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCAACAGAAGGGCATGGGCTGTCCTTATGCACAGCAGGGGTGCC  650

seq1  TCAGAGAAGTGATGTGGAGGGGCAGCTCATCTGTGGCTGCCGCATCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAGTGATGTGGAGGGGCAGCTCATCTGTGGCTGCCGCATCCACT  700

seq1  GTCTCTTTGTAGTGGACTAAATGAACTTGGGAGGGAGGAGGGAGGGA  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTGTAGTGGACTAAATGAACTTGGGAGGGAGGAGGGAGGGA  747

seq1: chr19_31269086_31269599
seq2: B6Ng01-075F04.g_531_565 (reverse)

seq1  CCACTTGTGATTGCTTTCTTCTCCCTCCCAAGTGTG---TGTGTATGTGT  47
      ||||||||||||||||||||    |||||||||| |              
seq2  CCACTTGTGATTGCTTTCTT----CTCCCAAGTGGGACC-----------  35

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGA  97
                                                        
seq2  --------------------------------------------------  35

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGGGTGGACAGGGGGTGGGC  147
                                                        
seq2  --------------------------------------------------  35

seq1  TGGGGGTAAGAGGGAAACATGATCTGGTATTGAGTGAGGAAAAAAGCTGA  197
                                                        
seq2  --------------------------------------------------  35

seq1  AGCCCTGAGGCCCAGCAGACAGAATGGAAACAAGCAACATCGGAGGTAGA  247
                                                        
seq2  --------------------------------------------------  35

seq1  AGGTTGGGGGGATCCCCCAGAATGCACCAGAGACTTGGGAGGTAAGAGAC  297
                                                        
seq2  --------------------------------------------------  35

seq1  TCTCAGGACTCAAAGGGAGGGACCTTAGACGAAATGCCTTACAGTAGGGA  347
                                                        
seq2  --------------------------------------------------  35

seq1  GAGGGAACTTAAATAGTCCACCTCCAGTAGGAAGACAGGACATCAAATGA  397
                                                        
seq2  --------------------------------------------------  35

seq1  GGGAGGGGGTTGCCATCCCACAGTCAAAACTCTCACCCATAATTGTTCTT  447
                                                        
seq2  --------------------------------------------------  35

seq1  GTCTCAAAGAACTGTAGGGATGGAAGTGGAGGAAAAGAAGGTCCAGTGAC  497
                                                        
seq2  --------------------------------------------------  35

seq1  AGGCCCAAAGTGGGACC  514
                       
seq2  -----------------  35