BAC Information

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BAC

Clone NameB6Ng01-075N13
Chromosome19 (Build37)
Map Location 59,275,646 - 59,391,217
singlet/doubletdoublet
Overlap geneKcnk18, Slc18a2, Pdzd8
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627
Downstream geneLOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075N13.bB6Ng01-075N13.g
ACCDH892291DH892292
length1,227354
definitionDH892291|Mus musculus domesticus DNA, BAC clone: B6Ng01-075N13, 5' end.DH892292|Mus musculus domesticus DNA, BAC clone: B6Ng01-075N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,389,989 - 59,391,217)(59,275,646 - 59,275,999)
sequence
gaattcttactcttctaaaaacagcattttaaagttagagattttcttaa
tctgtttaacctgtcttctttttggtgatagttattaggcactaagttta
aagccttttttaaagattctttaatatttaaatttaggaactttctttct
ctaccctcataaattattcaggattctcagtttatggtcccagttcgtaa
gatgtgaatatgatctggggatcagtgtcttcaaacttaggacataattt
tctcaaatttccatggtgcatttttccattctccttttattattttgttg
ctacctgtgctctttaagtagtggtaaagtagtagagtaacacctagtat
gctagtaaatgctaaagttttcctctgctcactctagagacgaactggca
ggtttcagtctcattgtgagggtggataatatagaagttggacgcatgga
caatgccctttcttttcttcaatataagaatttttatgtcatctcagcat
tagacccggtgtcctttatagaactgaatattaaacatggattaagtgtt
tcttttattctgttaatggttgttttcaacataaggaaagacagtctaga
gagatggctcaatggttaagagtactactgtctgtccttccagggggccc
tgttgatttcccaacacccacaactatcgataactatacttccagatggt
ctgatgccctcttggcaccagacatgcacgtggtacacagacagacatac
aggcaaaacattcatacacatttttaaaggaaagaagtaataaataatga
acatctgttttgtttaccactctgctaataagtactttatgtatattgtc
ttctaattttaaaactagttcttccttaatgctgttttttttttttctac
agtttcctgagagggaaacatatttaggaaagtaaaaatttaactaggct
cacttagtggtgaagtcatatgtgtggtcatattcgatggcggtatcctc
atattacattttacagaaatgatttacttatatgcatcactgttgcactt
gtttttggtttaaatccaacagtattttgaaaaatttcttcttgattact
actgtatagaggaatattggccattgttttacctcatgagatattatgtt
tcaggttaattaacttggcactggaaatcagctgcaaggaacctttactt
gagctcctttctttggcctttttccac
agtgaggtgtttaaataaattgtgaagatttgaaaactgggtttcagtta
tttcttttgaattttgaattagttctaaaagactggaaccagggaaagtt
tttgcccaccttttgcagtgctgggaggccaaacttagggcttcatgtct
ccttggccaccatctattattgagaaattgtcctagccatgtgtggtcag
ctttttatcccaagtccatggtgcctttagcatattcagaagccaaagat
ggccagaatgaaacaaagttacttagttaggaccccaagtttctctaagg
atactcctggcttgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59389989_59391217
seq2: B6Ng01-075N13.b_50_1276 (reverse)

seq1  GTGGAAAA--GCC-AAGAAAG--GCTCAAGTTAAAGGTTTCCTTGGCAGC  45
      ||||||||  ||| |||||||  ||||||| |||||| |||||| |||||
seq2  GTGGAAAAAGGCCAAAGAAAGGAGCTCAAG-TAAAGG-TTCCTT-GCAGC  47

seq1  TGATTTTTCAGTAGCCAAGTTAAATAAACTGAAACAT-ATA-CTCATGAG  93
      ||| ||| |||| |||||||||| ||| ||||||||| ||| ||||||||
seq2  TGA-TTTCCAGT-GCCAAGTTAATTAACCTGAAACATAATATCTCATGAG  95

seq1  GTAAAACAATTGGCCAAATTATCTCTATACAGTAGTAATCAAGAAGGAGA  143
      ||||||||| |||||||  |  ||||||||||||||||||||||| || |
seq2  GTAAAACAA-TGGCCAATATTCCTCTATACAGTAGTAATCAAGAA-GAAA  143

seq1  TTTTTCAAAATACTGTTGGATTTAAAACCAAAACAAGTTGCACAGTGATG  193
      |||||||||||||||||||||||||| | |||||||||   |||||||||
seq2  TTTTTCAAAATACTGTTGGATTTAAACCAAAAACAAGTGCAACAGTGATG  193

seq1  CATATAAGTATATCATTTCTGTAAAATGTAATATGGAGGATACCGCCATC  243
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  CATATAAGTAAATCATTTCTGTAAAATGTAATAT-GAGGATACCGCCATC  242

seq1  GAATATGACCACACATATTGACTTCACCACCTAAGTGAGCCTAGTTAAAT  293
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  GAATATGACCACACATA-TGACTTCACCA-CTAAGTGAGCCTAGTTAAAT  290

seq1  TTTTACTTTCCT-AATATGTTTCCCTCTCAGGAAACTGTAGAAAAAAAAA  342
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTCCTAAATATGTTTCCCTCTCAGGAAACTGTAGAAAAAAAAA  340

seq1  AAACAGCATTAAGGAAGAACTAGTTTTAAAATTAGAAGACAATATACATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCATTAAGGAAGAACTAGTTTTAAAATTAGAAGACAATATACATA  390

seq1  AAGTACTTATTAGCAGAGTGGTAAACAAAACAGATGTTCATTATTTATTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTATTAGCAGAGTGGTAAACAAAACAGATGTTCATTATTTATTA  440

seq1  CTTCTTTCCTTTAAAAATGTGTATGAATGTTTTGCCTGTATGTCTGTCTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCCTTTAAAAATGTGTATGAATGTTTTGCCTGTATGTCTGTCTG  490

seq1  TGTACCACGTGCATGTCTGGTGCCAAGAGGGCATCAGACCATCTGGAAGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACGTGCATGTCTGGTGCCAAGAGGGCATCAGACCATCTGGAAGT  540

seq1  ATAGTTATCGATAGTTGTGGGTGTTGGGAAATCAACAGGGCCCCCTGGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATCGATAGTTGTGGGTGTTGGGAAATCAACAGGGCCCCCTGGAA  590

seq1  GGACAGACAGTAGTACTCTTAACCATTGAGCCATCTCTCTAGACTGTCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACAGTAGTACTCTTAACCATTGAGCCATCTCTCTAGACTGTCTT  640

seq1  TCCTTATGTTGAAAACAACCATTAACAGAATAAAAGAAACACTTAATCCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGTTGAAAACAACCATTAACAGAATAAAAGAAACACTTAATCCA  690

seq1  TGTTTAATATTCAGTTCTATAAAGGACACCGGGTCTAATGCTGAGATGAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATATTCAGTTCTATAAAGGACACCGGGTCTAATGCTGAGATGAC  740

seq1  ATAAAAATTCTTATATTGAAGAAAAGAAAGGGCATTGTCCATGCGTCCAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTCTTATATTGAAGAAAAGAAAGGGCATTGTCCATGCGTCCAA  790

seq1  CTTCTATATTATCCACCCTCACAATGAGACTGAAACCTGCCAGTTCGTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATATTATCCACCCTCACAATGAGACTGAAACCTGCCAGTTCGTCT  840

seq1  CTAGAGTGAGCAGAGGAAAACTTTAGCATTTACTAGCATACTAGGTGTTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTGAGCAGAGGAAAACTTTAGCATTTACTAGCATACTAGGTGTTA  890

seq1  CTCTACTACTTTACCACTACTTAAAGAGCACAGGTAGCAACAAAATAATA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTACTTTACCACTACTTAAAGAGCACAGGTAGCAACAAAATAATA  940

seq1  AAAGGAGAATGGAAAAATGCACCATGGAAATTTGAGAAAATTATGTCCTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAATGGAAAAATGCACCATGGAAATTTGAGAAAATTATGTCCTA  990

seq1  AGTTTGAAGACACTGATCCCCAGATCATATTCACATCTTACGAACTGGGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAAGACACTGATCCCCAGATCATATTCACATCTTACGAACTGGGA  1040

seq1  CCATAAACTGAGAATCCTGAATAATTTATGAGGGTAGAGAAAGAAAGTTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACTGAGAATCCTGAATAATTTATGAGGGTAGAGAAAGAAAGTTC  1090

seq1  CTAAATTTAAATATTAAAGAATCTTTAAAAAAGGCTTTAAACTTAGTGCC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTAAATATTAAAGAATCTTTAAAAAAGGCTTTAAACTTAGTGCC  1140

seq1  TAATAACTATCACCAAAAAGAAGACAGGTTAAACAGATTAAGAAAATCTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTATCACCAAAAAGAAGACAGGTTAAACAGATTAAGAAAATCTC  1190

seq1  TAACTTTAAAATGCTGTTTTTAGAAGAGTAAGAATTC  1229
      |||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAAAATGCTGTTTTTAGAAGAGTAAGAATTC  1227

seq1: chr19_59275646_59275999
seq2: B6Ng01-075N13.g_75_428

seq1  AGTGAGGTGTTTAAATAAATTGTGAAGATTTGAAAACTGGGTTTCAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGTGTTTAAATAAATTGTGAAGATTTGAAAACTGGGTTTCAGTTA  50

seq1  TTTCTTTTGAATTTTGAATTAGTTCTAAAAGACTGGAACCAGGGAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGAATTTTGAATTAGTTCTAAAAGACTGGAACCAGGGAAAGTT  100

seq1  TTTGCCCACCTTTTGCAGTGCTGGGAGGCCAAACTTAGGGCTTCATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCACCTTTTGCAGTGCTGGGAGGCCAAACTTAGGGCTTCATGTCT  150

seq1  CCTTGGCCACCATCTATTATTGAGAAATTGTCCTAGCCATGTGTGGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCCACCATCTATTATTGAGAAATTGTCCTAGCCATGTGTGGTCAG  200

seq1  CTTTTTATCCCAAGTCCATGGTGCCTTTAGCATATTCAGAAGCCAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATCCCAAGTCCATGGTGCCTTTAGCATATTCAGAAGCCAAAGAT  250

seq1  GGCCAGAATGAAACAAAGTTACTTAGTTAGGACCCCAAGTTTCTCTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAATGAAACAAAGTTACTTAGTTAGGACCCCAAGTTTCTCTAAGG  300

seq1  ATACTCCTGGCTTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCTGGCTTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  350

seq1  TGTG  354
      ||||
seq2  TGTG  354