BAC Information

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BAC

Clone NameB6Ng01-077B10
Chromosome19 (Build37)
Map Location 19,054,934 - 19,176,339
singlet/doubletdoublet
Overlap geneRorb
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
Downstream geneLOC100042218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077B10.bB6Ng01-077B10.g
ACCDH893155DH893156
length1,2041,163
definitionDH893155|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B10, 5' end.DH893156|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,054,934 - 19,056,143)(19,175,157 - 19,176,339)
sequence
gaattctccggcttgggcttaaatcaaacgctttatagacaatgactagg
atgagttttccatttatttctgaaaggtgtttcagttttatgtcctctcc
cgcaataaagctcacaatatacctggagggagaaatgtatagcacaccaa
gaaaacacacctactgaactttctgacacagaaatatttcctggctactc
tctgcagacacattgatgtattcaaagctccactctaacagaggccacgt
actgttacatcttcaagcatttctgtgcatcttatcactccccaagggtg
agcacagcgtgtattttaactgtttgcactctaacctgatttgttctgct
aatgacattcactggagtagagacagcttcttaaactgcctcctcttaag
gaaaccagcacagttctgtatacaagtgatttccaaatacttaggctgac
agcatcagtacacaatatatgtttaacccttatcttaatcccacagatgc
aaagaacatttccatgttagagggtcagaaatcacttcacttttgtatgg
catgtgggatttaaggtagaacagaagttttcagggtgactagaaattaa
aagtcacatctccatcaaagatttgtacctcccgtggcatgagaacagaa
caggtgtttttgagaccagctgcacaatcacctgtgactctgggggtcat
tttggaaattgttatgtcttactatctctcagtctccaagtcttcacgtt
tccacctactgttcaccggttaaactggtcttagcttaactctttcagca
ttgaagataacccaaaaccattagggatttgagctttgtactggaagtct
gatccaattggctcatttcagtacctctctcatgtcatctaagcctttca
caaactttgggtgtagagggcagcttctgttatagtagtcacaagtagtg
tgtgacaatggagtgcattaaagaaagaagtatatgactaaaggcctgat
tattgacttttaatgaaatttaagtcagctagtgaaataatgtcatatga
tccagttctgcctgggaaaacatttttctgtaaagcttgtctgtgtacag
aagttcagtgttttcaagggtatgtcatctatggaacaactgaaaccttt
aaatataattatcttcaccttctagattttgcctgtaaatagctgcattt
aggc
gaattcaaaaactagtttaacagcccagactgatttcttaggggcttctc
taaaagggtagaaagttagaaagccactctattttttagtatatttgaac
aaacagtcatttcctaaaacaactgattttctggatacttagtgcaattt
ctctgtggtccacttatgtctaatgacagtggacatatgctcagacttga
tgtaatttctggccaatgtcctcttttgtgtggtaaatgtagagtgaatc
tcgataaaacaatgcatttgtttgagctgctatttgtaacagaaatatca
tttgtttgtttgtctatttaacttgtaagaaaatatgcctagtactttgg
actaattaatagaaccaaactaatattctgttcttttcattaaaaagact
gcttaaaaggcaatcttattaaataggatcagagtgtgttgttctttgta
attaatgctcataacatcagatcactgtgttatttttatttgcctaaata
gtaaagtgaaactagttacttgaaaagctccgtttaaaatgttaaatgga
acatgtctaaggaatgaattacaagagtacttcatgcagtttaatagtac
ttcattaacatgaaattcagtattggaagatttccatttttactctatag
cttaagacagaacaaacacccaaatcatgtttttcacccagcagctgttg
gcttctagatttcagaaccaaacaataacacaagttgaaaacatttagac
atgttgatttcctaatgaattacttgctattattatcattgttgaatcaa
ataaaattattacacagaacgttttcttttaacttgtacatacgttgtgc
ctggcacgtgcagaggaattgaacacttttaaaggagagaagaaacttcg
gtccaaattcccacagtcgttaaatatgagcaaatgccgcacagtctggt
agaacagagtaacatttgtaggaaaaacatgtcatatctttagtattgtg
cttcttggaaataattttctttctacaaaacaaagtattttaatatatta
gctggagattttggtctcatttgttattattagttacctctaaattcatt
caacaaaagtaaaatacataggattccttcctttcaactgactaattaaa
tagaaataattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19054934_19056143
seq2: B6Ng01-077B10.b_44_1247

seq1  GAATTCTCCGGCTTGGGCTTAAATCAAACGCTTTATAGACAATGACTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGGCTTGGGCTTAAATCAAACGCTTTATAGACAATGACTAGG  50

seq1  ATGAGTTTTCCATTTATTTCTGAAAGGTGTTTCAGTTTTATGTCCTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTTCCATTTATTTCTGAAAGGTGTTTCAGTTTTATGTCCTCTCC  100

seq1  CGCAATAAAGCTCACAATATACCTGGAGGGAGAAATGTATAGCACACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATAAAGCTCACAATATACCTGGAGGGAGAAATGTATAGCACACCAA  150

seq1  GAAAACACACCTACTGAACTTTCTGACACAGAAATATTTCCTGGCTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACACCTACTGAACTTTCTGACACAGAAATATTTCCTGGCTACTC  200

seq1  TCTGCAGACACATTGATGTATTCAAAGCTCCACTCTAACAGAGGCCACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGACACATTGATGTATTCAAAGCTCCACTCTAACAGAGGCCACGT  250

seq1  ACTGTTACATCTTCAAGCATTTCTGTGCATCTTATCACTCCCCAAGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTACATCTTCAAGCATTTCTGTGCATCTTATCACTCCCCAAGGGTG  300

seq1  AGCACAGCGTGTATTTTAACTGTTTGCACTCTAACCTGATTTGTTCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCGTGTATTTTAACTGTTTGCACTCTAACCTGATTTGTTCTGCT  350

seq1  AATGACATTCACTGGAGTAGAGACAGCTTCTTAAACTGCCTCCTCTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATTCACTGGAGTAGAGACAGCTTCTTAAACTGCCTCCTCTTAAG  400

seq1  GAAACCAGCACAGTTCTGTATACAAGTGATTTCCAAATACTTAGGCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGCACAGTTCTGTATACAAGTGATTTCCAAATACTTAGGCTGAC  450

seq1  AGCATCAGTACACAATATATGTTTAACCCTTATCTTAATCCCACAGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGTACACAATATATGTTTAACCCTTATCTTAATCCCACAGATGC  500

seq1  AAAGAACATTTCCATGTTAGAGGGTCAGAAATCACTTCACTTTTGTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATTTCCATGTTAGAGGGTCAGAAATCACTTCACTTTTGTATGG  550

seq1  CATGTGGGATTTAAGGTAGAACAGAAGTTTTCAGGGTGACTAGAAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGGATTTAAGGTAGAACAGAAGTTTTCAGGGTGACTAGAAATTAA  600

seq1  AAGTCACATCTCCATCAAAGATTTGTACCTCCCGTGGCATGAGAACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACATCTCCATCAAAGATTTGTACCTCCCGTGGCATGAGAACAGAA  650

seq1  CAGGTGTTTTTGAGACCAGCTGCACAATCACCTGTGACTCTGGGGGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTTTTTGAGACCAGCTGCACAATCACCTGTGACTCTGGGGGTCAT  700

seq1  TTTGGAAATTGTTATGTCTTACTATCTCTCAGTCTCCAAGTCTTCAGGTT  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTGGAAATTGTTATGTCTTACTATCTCTCAGTCTCCAAGTCTTCACGTT  750

seq1  TCCACCTACTGTTCACCGGTTAAACTGGTCTTAGCTTAACTCTTTCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTACTGTTCACCGGTTAAACTGGTCTTAGCTTAACTCTTTCAGCA  800

seq1  TTGAAGATAACCCAAAACCATTAGGGATTTGAGCTTTGTACTGGAAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATAACCCAAAACCATTAGGGATTTGAGCTTTGTACTGGAAGTCT  850

seq1  GATCCAATTGGCTCATTTCAGTACCTCTCTCATGTCATCTAAGCCTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAATTGGCTCATTTCAGTACCTCTCTCATGTCATCTAAGCCTTTCA  900

seq1  CAAACTTTGGGTGTAGAGGGCAGCTTCTGTTATAGTAGTCACAAGGTAGT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAACTTTGGGTGTAGAGGGCAGCTTCTGTTATAGTAGTCACAA-GTAGT  949

seq1  GTGTGACAATGGAGTGCATTAAAGAAAGAAGTATATGACTAAAGGCCTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACAATGGAGTGCATTAAAGAAAGAAGTATATGACTAAAGGCCTGA  999

seq1  TTATTGACTTTTAATTGAAATTTAAGTCAGCTAGTGATAT-ATGTCATAT  1049
      |||||||||||||| |||||||||||||||||||||| || |||||||||
seq2  TTATTGACTTTTAA-TGAAATTTAAGTCAGCTAGTGAAATAATGTCATAT  1048

seq1  GATCCAGTTCTGCCT-GGAAAACATTTTTCTGTAAAGCTTGTCTGTGTAC  1098
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATCCAGTTCTGCCTGGGAAAACATTTTTCTGTAAAGCTTGTCTGTGTAC  1098

seq1  AGAGTTTCCAGTGTTTTCATAGGGTTATGTCATCTATGAGAACAAACTTG  1148
      |||  || ||||||||||| |||| ||||||||||||| ||||||   ||
seq2  AGAAGTT-CAGTGTTTTCA-AGGG-TATGTCATCTATG-GAACAA--CTG  1142

seq1  AGACACTTAAAATTATAAATTAATTCTTCACCTTCTAGATTTTTGCGTGG  1198
      | ||  |||||  ||| |||||  ||||||||||||||| |||||| | |
seq2  AAACCTTTAAA--TAT-AATTA--TCTTCACCTTCTAGA-TTTTGCCT-G  1185

seq1  TAAATA-------TTAGGC  1210
      ||||||       ||||||
seq2  TAAATAGCTGCATTTAGGC  1204

seq1: chr19_19175157_19176339
seq2: B6Ng01-077B10.g_67_1229 (reverse)

seq1  AGAATTAATCTCATTTTAAAATTTAGTCAGTTTTGAAAGGAAGGGAATCT  50
      |||||| || ||  |||||   ||||||||  |||||||||| |||||| 
seq2  AGAATT-ATTTCTATTTAA---TTAGTCAG--TTGAAAGGAA-GGAATCC  43

seq1  AATGTATTCTACTGTTTGGTTTGAATTGAATTTTAGAGTAAACTAATAAA  100
       ||||||| |||| ||||  ||||| |||| |||||||  ||||||||| 
seq2  TATGTATTTTACT-TTTG--TTGAA-TGAA-TTTAGAGGTAACTAATAA-  87

seq1  TTAACATATGGAGACCCAAAATCCTCCAGCTAATATATTTAAAATACTTT  150
       ||||| || |||| ||||||| |||||||||||||| ||||||||||||
seq2  -TAACAAAT-GAGA-CCAAAAT-CTCCAGCTAATATA-TTAAAATACTTT  132

seq1  GTTTTGTAGAAAGAAAATTATTTCCAAGAAGCACAATACCTTAAAGATAT  200
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  GTTTTGTAGAAAGAAAATTATTTCCAAGAAGCACAATAC--TAAAGATAT  180

seq1  GACATGTTTTTCCTACAAATGTTACTCTGTTCTACCAGACTGTGCGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTTTTTCCTACAAATGTTACTCTGTTCTACCAGACTGTGCGGCAT  230

seq1  TTGCTCATATTTAACGACTGTGGGAATTTGGACCGAAGTTTCTTCTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATATTTAACGACTGTGGGAATTTGGACCGAAGTTTCTTCTCTCC  280

seq1  TTTAAAAGTGTTCAATTCCTCTGCACGTGCCAGGCACAACGTATGTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTGTTCAATTCCTCTGCACGTGCCAGGCACAACGTATGTACAA  330

seq1  GTTAAAAGAAAACGTTCTGTGTAATAATTTTATTTGATTCAACAATGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGAAAACGTTCTGTGTAATAATTTTATTTGATTCAACAATGATA  380

seq1  ATAATAGCAAGTAATTCATTAGGAAATCAACATGTCTAAATGTTTTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCAAGTAATTCATTAGGAAATCAACATGTCTAAATGTTTTCAAC  430

seq1  TTGTGTTATTGTTTGGTTCTGAAATCTAGAAGCCAACAGCTGCTGGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTATTGTTTGGTTCTGAAATCTAGAAGCCAACAGCTGCTGGGTGA  480

seq1  AAAACATGATTTGGGTGTTTGTTCTGTCTTAAGCTATAGAGTAAAAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGATTTGGGTGTTTGTTCTGTCTTAAGCTATAGAGTAAAAATGG  530

seq1  AAATCTTCCAATACTGAATTTCATGTTAATGAAGTACTATTAAACTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCCAATACTGAATTTCATGTTAATGAAGTACTATTAAACTGCAT  580

seq1  GAAGTACTCTTGTAATTCATTCCTTAGACATGTTCCATTTAACATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACTCTTGTAATTCATTCCTTAGACATGTTCCATTTAACATTTTAA  630

seq1  ACGGAGCTTTTCAAGTAACTAGTTTCACTTTACTATTTAGGCAAATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGCTTTTCAAGTAACTAGTTTCACTTTACTATTTAGGCAAATAAAA  680

seq1  ATAACACAGTGATCTGATGTTATGAGCATTAATTACAAAGAACAACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACAGTGATCTGATGTTATGAGCATTAATTACAAAGAACAACACAC  730

seq1  TCTGATCCTATTTAATAAGATTGCCTTTTAAGCAGTCTTTTTAATGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCTATTTAATAAGATTGCCTTTTAAGCAGTCTTTTTAATGAAAA  780

seq1  GAACAGAATATTAGTTTGGTTCTATTAATTAGTCCAAAGTACTAGGCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAATATTAGTTTGGTTCTATTAATTAGTCCAAAGTACTAGGCATA  830

seq1  TTTTCTTACAAGTTAAATAGACAAACAAACAAATGATATTTCTGTTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTACAAGTTAAATAGACAAACAAACAAATGATATTTCTGTTACAA  880

seq1  ATAGCAGCTCAAACAAATGCATTGTTTTATCGAGATTCACTCTACATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGCTCAAACAAATGCATTGTTTTATCGAGATTCACTCTACATTTA  930

seq1  CCACACAAAAGAGGACATTGGCCAGAAATTACATCAAGTCTGAGCATATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAAAAGAGGACATTGGCCAGAAATTACATCAAGTCTGAGCATATG  980

seq1  TCCACTGTCATTAGACATAAGTGGACCACAGAGAAATTGCACTAAGTATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTCATTAGACATAAGTGGACCACAGAGAAATTGCACTAAGTATC  1030

seq1  CAGAAAATCAGTTGTTTTAGGAAATGACTGTTTGTTCAAATATACTAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCAGTTGTTTTAGGAAATGACTGTTTGTTCAAATATACTAAAA  1080

seq1  AATAGAGTGGCTTTCTAACTTTCTACCCTTTTAGAGAAGCCCCTAAGAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTGGCTTTCTAACTTTCTACCCTTTTAGAGAAGCCCCTAAGAAA  1130

seq1  TCAGTCTGGGCTGTTAAACTAGTTTTTGAATTC  1183
      |||||||||||||||||||||||||||||||||
seq2  TCAGTCTGGGCTGTTAAACTAGTTTTTGAATTC  1163