BAC Information

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BAC

Clone NameB6Ng01-079D07
Chromosome19 (Build37)
Map Location 10,581,191 - 10,753,970
singlet/doubletdoublet
Overlap gene0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5
Upstream geneLOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik
Downstream gene2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079D07.bB6Ng01-079D07.g
ACCDH894685DH894686
length1,0961,065
definitionDH894685|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D07, 5' end.DH894686|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,752,860 - 10,753,970)(10,581,191 - 10,582,260)
sequence
gaattcaccagagtagaaggagaaagaagtaagaaagtcagatataatag
aataattatgcataccaaggtcaactgaaaagcagtcacacacaaataaa
atctatatagccattgtctagggctaatgttagaagaaatggaacaactg
ttttttacaaagagctgccatgggctactgagatgtctccatcctagcct
acttcaggcagtcccttatttcagatagcaggtcccctggagggatgtgt
ctcctgtttctcagggtcccagacgccatccttttctacaaggagctgct
atgggtttctgagatgtctccatctctgcctactgcaggcagtccctgtc
attgtatgctgtccccagcaccctattacagctcccctgataggaccctg
atttgtctgcccatccagacgagcaaataaatattcttctaagcattttg
tcagaaaaacacctctgggagcctttggcctgggatacatatgtttacct
ccttaaactggcactacagcataaaatacagactaatactcttctcccca
caggagtccaagattcttcatggtgtccctgttgcacactctgggatgaa
gtgtcttctcatttgcagggagcaacttaggagccaggaacagtgtgtga
aaaccaaagtgcatgcatcataataccccagctgctaacatttaaagagc
aggaattttacataaaaaaaaaaaaaatccaggctctgacttctctcaaa
aatgtggccaacttggcatcttggcttccttccagcctggcactggcagg
tcagagctgactcaagactgcccccttgtggtaagataatatggcatcat
gcccaccatgggcacccagactacaacccactttgcctcctcggtcactc
tacgaaggcaaggactagctgcctatcttctttgggttttaaagaaaaat
aaacttttaaagtcttccacttatcatggataaattttacatttactgtt
gtatttatgtgttgttgttgatgtggggtgggtgggtgctctaccaagag
ggtatggaggttaacttgtcctggctatcactcaggtgcagactcg
gaattccattcccaacatgcatgttaaggaaagagaacttcacactcagt
gtgtgtgtgtgctgtgaagtgcatctgtggaggtctgtctctgtctctct
tacacacacacacacacacacacacacacacacacacacacacacacaca
ctccaattatttttaaagcaagcaaacaaaaaaatgtgatgttgatttag
agagaaggctcagcagctaagagcatgtacggcttttccaggggccccaa
gtttgattccagcacctgcatcaggtggctcacaaccaaccaacctgtac
tcctgctccaggggtccaatgccttgggcctccactgacacctgcaccca
catgtggcatacagacacacatacatatacatggtgataaataaaataaa
cccagagggagggaaactacaacaagaaagcaaaaataaacagacgcagg
gataacttgtgtcaggactcccagtaagaactgaaagtaattatgactaa
tagcaaaagctccagttgaaaaagcaggcaaaatataagaacagatgaat
tccagctgggagctagaaagtctaaatgtcatatggaaatgctaaaaata
aaatcacagcagcagcaatgcaaaattactttaatgagactcattgtgac
atctgacacaattcaagaatcagtgagacgggccgagagatgttgccaaa
tacaaaggacccaaaatgatttacaaagagaaaaagcacagagaacagat
gtaaggaactgtggacacaagttgctcagagtgcaatcagaattacaaaa
ggaaaagagaatatgaaaggagaccaaagatcttccaataataatcaaag
acatgggggctgggagagatgtgctcagcagttaagagcattgactgctc
ttccagaggtcctgaatacaaatcccaataggtgctcacaccatccataa
tgagatctgatgccctcttctggagtgtctgagacagctacgtgtactta
catattataaataataaatcttaaaaaaaaattaagacctaaaatctgag
aagccaacatgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10752860_10753970
seq2: B6Ng01-079D07.b_47_1142 (reverse)

seq1  CGAGTCTGACAACCTGAGTTTGATAGCCAGGGCCAAGTTTAACCTCCATA  50
      ||||||||   |||||||  ||||||||| || |||| ||||||||||||
seq2  CGAGTCTG--CACCTGAG--TGATAGCCA-GGACAAG-TTAACCTCCATA  44

seq1  CACCTCTGTGGTAGAGGCACCCACCCA-CCCACATCAAACAAACAAACAC  99
      | ||||| ||||||| ||||||||||| |||||||| |||||   |||||
seq2  C-CCTCT-TGGTAGA-GCACCCACCCACCCCACATC-AACAA--CAACAC  88

seq1  ATAAATACAACAGTAAATGTAAAATGTATCCATGATAAGTGGAAGACTTT  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAAATACAACAGTAAATGTAAAATTTATCCATGATAAGTGGAAGACTTT  138

seq1  TAAAAAGTTTATTTTTCTTTAAAAACCAAAAGAAGATAGGCAGCTAGTCC  199
        |||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  --AAAAGTTTATTTTTCTTT-AAAACCCAAAGAAGATAGGCAGCTAGTCC  185

seq1  TTGCCTTCGTAGAGTGACCGAGGAGGCAAAGTGGGTTGTAGTCTGGGTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGCCTTCGTAGAGTGACCGAGGAGGCAAAGTGGGTTGTAGTCTGGGTGC  235

seq1  CCATGGTGGGCATGATGCCATATTATCTTACCACAAGGGGGCAGTCTTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGGGCATGATGCCATATTATCTTACCACAAGGGGGCAGTCTTGA  285

seq1  GTCAGCTCTGACCTGCCAGTGCCAGGCTGGAAGGAAGCCAAGATGCCAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTCTGACCTGCCAGTGCCAGGCTGGAAGGAAGCCAAGATGCCAAG  335

seq1  TTGGCCACATTTTTGAGAGAAGTCAGAGCCTGGATTTTTTTTTTTTTTTA  399
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGGCCACATTTTTGAGAGAAGTCAGAGCCTGGA-TTTTTTTTTTTTTTA  384

seq1  TGTAAAATTCCTGCTCTTTAAATGTTAGCAGCTGGGGTATTATGATGCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATTCCTGCTCTTTAAATGTTAGCAGCTGGGGTATTATGATGCAT  434

seq1  GCACTTTGGTTTTCACACACTGTTCCTGGCTCCTAAGTTGCTCCCTGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGGTTTTCACACACTGTTCCTGGCTCCTAAGTTGCTCCCTGCAA  484

seq1  ATGAGAAGACACTTCATCCCAGAGTGTGCAACAGGGACACCATGAAGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGACACTTCATCCCAGAGTGTGCAACAGGGACACCATGAAGAAT  534

seq1  CTTGGACTCCTGTGGGGAGAAGAGTATTAGTCTGTATTTTATGCTGTAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACTCCTGTGGGGAGAAGAGTATTAGTCTGTATTTTATGCTGTAGT  584

seq1  GCCAGTTTAAGGAGGTAAACATATGTATCCCAGGCCAAAGGCTCCCAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTTAAGGAGGTAAACATATGTATCCCAGGCCAAAGGCTCCCAGAG  634

seq1  GTGTTTTTCTGACAAAATGCTTAGAAGAATATTTATTTGCTCGTCTGGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTCTGACAAAATGCTTAGAAGAATATTTATTTGCTCGTCTGGAT  684

seq1  GGGCAGACAAATCAGGGTCCTATCAGGGGAGCTGTAATAGGGTGCTGGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGACAAATCAGGGTCCTATCAGGGGAGCTGTAATAGGGTGCTGGGG  734

seq1  ACAGCATACAATGACAGGGACTGCCTGCAGTAGGCAGAGATGGAGACATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATACAATGACAGGGACTGCCTGCAGTAGGCAGAGATGGAGACATC  784

seq1  TCAGAAACCCATAGCAGCTCCTTGTAGAAAAGGATGGCGTCTGGGACCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACCCATAGCAGCTCCTTGTAGAAAAGGATGGCGTCTGGGACCCT  834

seq1  GAGAAACAGGAGACACATCCCTCCAGGGGACCTGCTATCTGAAATAAGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAGGAGACACATCCCTCCAGGGGACCTGCTATCTGAAATAAGGG  884

seq1  ACTGCCTGAAGTAGGCTAGGATGGAGACATCTCAGTAGCCCATGGCAGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGAAGTAGGCTAGGATGGAGACATCTCAGTAGCCCATGGCAGCT  934

seq1  CTTTGTAAAAAACAGTTGTTCCATTTCTTCTAACATTAGCCCTAGACAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAAAAAACAGTTGTTCCATTTCTTCTAACATTAGCCCTAGACAAT  984

seq1  GGCTATATAGATTTTATTTGTGTGTGACTGCTTTTCAGTTGACCTTGGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATAGATTTTATTTGTGTGTGACTGCTTTTCAGTTGACCTTGGTA  1034

seq1  TGCATAATTATTCTATTATATCTGACTTTCTTACTTCTTTCTCCTTCTAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATTATTCTATTATATCTGACTTTCTTACTTCTTTCTCCTTCTAC  1084

seq1  TCTGGTGAATTC  1111
      ||||||||||||
seq2  TCTGGTGAATTC  1096

seq1: chr19_10581191_10582260
seq2: B6Ng01-079D07.g_71_1135

seq1  GAATTCCATCCCCAACATGCATGTTAAGGAAAGAGAACTTCACACTCAGT  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCCAACATGCATGTTAAGGAAAGAGAACTTCACACTCAGT  50

seq1  GTGTGTGTGTGCTGTGAAGTGCATCTGTGGAGGTCTGTCTCTGTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGCTGTGAAGTGCATCTGTGGAGGTCTGTCTCTGTCTCTCT  100

seq1  TACACACACACACACACACACACACACACACACACACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACACACACACACACACACACA  150

seq1  CTCCAATTATTTTTAAAGCAAGCAAACAAAAAAATGTGATGTTGATTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATTATTTTTAAAGCAAGCAAACAAAAAAATGTGATGTTGATTTAG  200

seq1  AGAGAAGGCTCAGCAGCTAAGAGCATGTACGGCTTTTCCAGGGGCCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGCTCAGCAGCTAAGAGCATGTACGGCTTTTCCAGGGGCCCCAA  250

seq1  GTTTGATTCCAGCACCTGCATCAGGTGGCTCACAACCAACCAACCTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTCCAGCACCTGCATCAGGTGGCTCACAACCAACCAACCTGTAC  300

seq1  TCCTGCTCCAGGGGTCCAATGCCTTGGGCCTCCACTGACACCTGCACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCCAGGGGTCCAATGCCTTGGGCCTCCACTGACACCTGCACCCA  350

seq1  CATGTGGCATACAGACACACATACATATACATGGTGATAAATAAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGCATACAGACACACATACATATACATGGTGATAAATAAAATAAA  400

seq1  CCCAGAGGGAGGGAAACTACAACAAGAAAGCAAAAATAAACAGACGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGGAGGGAAACTACAACAAGAAAGCAAAAATAAACAGACGCAGG  450

seq1  GATAACTTGTGTCAGGACTCCCAGTAAGAACTGAAAGTAATTATGACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTGTGTCAGGACTCCCAGTAAGAACTGAAAGTAATTATGACTAA  500

seq1  TAGCAAAAGCTCCAGTTGAAAAAGCAGGCAAAATATAAGAACAGATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAGCTCCAGTTGAAAAAGCAGGCAAAATATAAGAACAGATGAAT  550

seq1  TCCAGCTGGGAGCTAGAAAGTCTAAATGTCATATGGAAATGCTAAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGGGAGCTAGAAAGTCTAAATGTCATATGGAAATGCTAAAAATA  600

seq1  AAATCACAGCAGCAGCAATGCAAAATTACTTTAATGAGACTCATTGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAGCAGCAGCAATGCAAAATTACTTTAATGAGACTCATTGTGAC  650

seq1  ATCTGACACAATTCAAGAATCAGTGAGACGGGCCGAGAGATGTTGCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACACAATTCAAGAATCAGTGAGACGGGCCGAGAGATGTTGCCAAA  700

seq1  TACAAAGGACCCAAAATGATTTACAAAGAGAAAAAGCACAGAGAACAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGACCCAAAATGATTTACAAAGAGAAAAAGCACAGAGAACAGAT  750

seq1  GTAAGGAACTGTGGACACAAGTTGCTCAGAGTGCAATCAGAATTACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAACTGTGGACACAAGTTGCTCAGAGTGCAATCAGAATTACAAAA  800

seq1  GGAAAAGAGAATATG-AAGGAGACCAAAGATCTTCCAATAATAATCAAAG  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGAATATGAAAGGAGACCAAAGATCTTCCAATAATAATCAAAG  850

seq1  ACATGGGGGCT-GGAGAGATG-GCTCAGCAGTTAAGAGCATTGACTGCTC  897
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  ACATGGGGGCTGGGAGAGATGTGCTCAGCAGTTAAGAGCATTGACTGCTC  900

seq1  TTCCAGAGGTCCTGAATACAAATCCC-ATAGTGGCTCACAACCATCCATA  946
      |||||||||||||||||||||||||| ||||  |||||| ||||||||||
seq2  TTCCAGAGGTCCTGAATACAAATCCCAATAGGTGCTCAC-ACCATCCATA  949

seq1  ATGAGATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTAC  996
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  ATGAGATCTGATGCCCTCTTCTGGAGTGTCTG-AGACAGCTAC-GTGTAC  997

seq1  TTACATATAATAAATAAATAAATCTTAAAAAAAAAATCAAAGACCTAAAA  1046
      |||||||| |||||| ||||||||||||||||||| |  ||||||| |||
seq2  TTACATATTATAAAT-AATAAATCTTAAAAAAAAATT--AAGACCT-AAA  1043

seq1  ATCTTGAGAAGCCAAACATGATAA  1070
      ||| ||||||||| ||||||||||
seq2  ATC-TGAGAAGCC-AACATGATAA  1065