BAC Information

Click to search

BAC

Clone NameB6Ng01-082I20
Chromosome19 (Build37)
Map Location 17,604,821 - 17,605,970
singlet/doubletsinglet
Overlap genePcsk5
Upstream geneGna14, Vps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082I20.bB6Ng01-082I20.g
ACCDH897074DH897075
length9101,139
definitionDH897074|Mus musculus domesticus DNA, BAC clone: B6Ng01-082I20, 5' end.DH897075|Mus musculus domesticus DNA, BAC clone: B6Ng01-082I20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctctttatattgtaaacatggccaaaactccacagcaagtgagg
tcatatgcccgaagtggggatctttttatttgtttgttttgttaagtgga
catttggtctaaatatttctgattatactcatagattagtaccgctttca
gccttgatcggaagagtttctctttgtggtggtttagtcaaaactcatct
cctggtcacagtgatgccaataagcgattgttgagtgctcagccctaaat
ggaacatctgtgtcaccagtgtccctctcttcaatgcccagagaatactg
tgaagggtttggggaggaagaatgtaggagtcagaggatgaggtgcgggg
tactgtgaagtgctgtcttttggacatgacatggccaatgtcctcatgac
ttcaaagcaaccatggtgacatacacaagagactggtggggtggctcagc
aggtaaaagtgcttggtggcaagcctgaccccccagagtttaatctctgg
gacccactcagtggaaggagacagtccacccctgtcagttttctctgacc
tccatatatgcaaggtagcatgcatatgtgtgacatgcacaaggtggcat
gcacatgtgtgtacactgtgacgtgcacaagactggattcatcaacattc
tatcacagatggggcatgggttcatgagacctccctccttctgaggggtc
atttcagttaatggttgccgggggaggggagtcactgcttcagtaatggg
attctggtaaggcaccagtgctccagttaaaaaggctcaacccatactgg
tataagcatccctgattaaattcagatggtcacacacaaaaacagacact
tagaggggggaaggagatgggattcagtcaaaggagagtgggaggggggt
taaagaatga

gaattctttgttcagctctgagccctgttttttaatggggttatttgatt
ttctggagtctaccttcttgagttctttatatatattgtatattagtccc
ctatctgatttaggattggtgaagatcctttcccaatctgttggtggcct
ttttgttttattgacagtgtcttttgccttacagaagctttgcaatttta
tgaggtcccaaaagcctcgaagatatgggcacagaggaaaaattcctgaa
tagaacagcaatggcttgtgctgtaagatcgagaatttacaaatgggaca
ctaaagctatttagttaagaaaatggtaaacaagaacctgtatatgctgt
agtttcttgggtttggtttttttcttttacctgaggattagagagatggt
attctggtttcaagctatttcccaaacaccaaatttatgttcttttcaga
cagcatttaagcagtatcaaaattcctgactgtgccgggaatgtaggtca
gtgtgctagagggcttgaagggagcaggagtacttcggctcaatctccag
cactcccaaatagaaggtccttttcctagagatcttataagtttgcctta
ttaattaaaagtgatattttgaatttcacttaagggcttcgtgcctggaa
gtggaacaaactgcttaagaaactcaattgatttgattcacaaaatggcc
tttcaatagatggggccatttgatctgagaacatacatttggaaggtata
ttcaatcattaagaatgtcccggttggtgcagcatgtctgttctgtgtcc
attcattttcacagtgacttcccttttggtacttctgttacttcaccaag
tggtttaagtaaggcatgcactgctttctttttataaacagcaaactact
tggaacactgaaagagcaattgaatccaccacaggagtacattgtaaaga
gggcagggctgggctctgagttcttgggcacagcccactgtcacttgcta
gtcaaattaatttatgcaaaattgttcgtccatctgagctcagtttctca
ctcaccaaaggtttctgtcttgactaaatatttacatagtaccgcactgt
aatcgggaagcatggatgaatgagctatgtgcctgctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17604821_17605970
seq2: B6Ng01-082I20.g_69_1207 (reverse)

seq1  GCAGCAAGCACATAGGCTTCTATTCATCCATGCTTTCCGTATTACAAGTG  50
      |||||| ||||||| |||   |||||||||||||| ||| ||||| ||||
seq2  GCAGCAGGCACATA-GCT--CATTCATCCATGCTTCCCG-ATTAC-AGTG  45

seq1  CTGTACTATGT-AATATTTAGTCCAGACAGAAACCCCTTTTGTGAGTGAG  99
      | ||||||||| ||||||||||| |||||||||  ||||| |||||||||
seq2  CGGTACTATGTAAATATTTAGTCAAGACAGAAA--CCTTTGGTGAGTGAG  93

seq1  AAACTGAGGCTCAGATGGACGAAACATTTTGCATAAATTAATTTGACTAG  149
      ||||||| |||||||||||||||  |||||||||||||||||||||||| 
seq2  AAACTGA-GCTCAGATGGACGAACAATTTTGCATAAATTAATTTGACTA-  141

seq1  GCAAGTGACAGTTGGGCTGTGCCCCAGGAACTCAGAGCCCAGCCCCTGCC  199
      ||||||||||| ||||||||| |||| ||||||||||||||| |||||||
seq2  GCAAGTGACAG-TGGGCTGTG-CCCAAGAACTCAGAGCCCAG-CCCTGCC  188

seq1  CTCTTTACAATGTACTCCTGTGGTGGATTCAATTGCTCTTTCAGTGTTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACAATGTACTCCTGTGGTGGATTCAATTGCTCTTTCAGTGTTCC  238

seq1  AAGTAGTTTTGCTGTTTATAAAAAGAAAGCAGTGCATGCCTTACTTAAAC  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAG-TTTGCTGTTTATAAAAAGAAAGCAGTGCATGCCTTACTTAAAC  287

seq1  CACTTGGTGAAGTAACAGAAGTACCAAAAGGGAAGTCACTGTGAAAATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGTGAAGTAACAGAAGTACCAAAAGGGAAGTCACTGTGAAAATGA  337

seq1  ATGGACACAGAACAGACATGCTGCACCAACC-GGACATTCTTAATGATTG  398
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGGACACAGAACAGACATGCTGCACCAACCGGGACATTCTTAATGATTG  387

seq1  AATATACCTTCCAAATGTATGTTCTCAGATCAAATGGCCCCATCTATTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCTTCCAAATGTATGTTCTCAGATCAAATGGCCCCATCTATTGA  437

seq1  AAGGCCATTTTGTGAATCAAATCAATTGAGTTTCTTAAGCAGTTTGTTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATTTTGTGAATCAAATCAATTGAGTTTCTTAAGCAGTTTGTTCC  487

seq1  ACTTCCAGGCACGAAGCCCTTAAGTGAAATTCAAAATATCACTTTTAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGGCACGAAGCCCTTAAGTGAAATTCAAAATATCACTTTTAATT  537

seq1  AATAAGGCAAACTTATAAGATCTCTAGGAAAAGGACCTTCTATTTGGGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCAAACTTATAAGATCTCTAGGAAAAGGACCTTCTATTTGGGAG  587

seq1  TGCTGGAGATTGAGCCGAAGTACTCCTGCTCCCTTCAAGCCCTCTAGCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGATTGAGCCGAAGTACTCCTGCTCCCTTCAAGCCCTCTAGCAC  637

seq1  ACTGACCTACATTCCCGGCACAGTCAGGAATTTTGATACTGCTTAAATGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTACATTCCCGGCACAGTCAGGAATTTTGATACTGCTTAAATGC  687

seq1  TGTCTGAAAAGAACATAAATTTGGTGTTTGGGAAATAGCTTGAAACCAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAAAGAACATAAATTTGGTGTTTGGGAAATAGCTTGAAACCAGA  737

seq1  ATACCATCTCTCTAATCCTCAGGTAAAAGAAAAAAACCAAACCCAAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATCTCTCTAATCCTCAGGTAAAAGAAAAAAACCAAACCCAAGAAA  787

seq1  CTACAGCATATACAGGTTCTTGTTTACCATTTTCTTAACTAAATAGCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCATATACAGGTTCTTGTTTACCATTTTCTTAACTAAATAGCTTT  837

seq1  AGTGTCCCATTTGTAAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCCATTTGTAAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC  887

seq1  TATTCAGGAATTTTTCCTCTGTGCCCATATCTTCGAGGCTTTTGGGACCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGAATTTTTCCTCTGTGCCCATATCTTCGAGGCTTTTGGGACCT  937

seq1  CATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAAACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAAACAA  987

seq1  AAAGGCCACCAACAGATTGGGAAAGGATCTTCACCAATCCTAAATCAGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCACCAACAGATTGGGAAAGGATCTTCACCAATCCTAAATCAGAT  1037

seq1  AGGGGACTAATATACAATATATATAAAGAACTCAAGAAGGTAGACTCCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACTAATATACAATATATATAAAGAACTCAAGAAGGTAGACTCCAG  1087

seq1  AAAATCAAATAACCCCATTAAAAAACAGGGCTCAGAGCTGAACAAAGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAATAACCCCATTAAAAAACAGGGCTCAGAGCTGAACAAAGAAT  1137

seq1  TC  1150
      ||
seq2  TC  1139


| Home | SequenceCutter | Blast | Download |