BAC Information

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BAC

Clone NameB6Ng01-082J04
Chromosome19 (Build37)
Map Location 43,843,370 - 44,030,321
singlet/doubletdoublet
Overlap geneAbcc2, Dnmbp, LOC668408
Upstream geneHps1, LOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc
Downstream geneCpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082J04.bB6Ng01-082J04.g
ACCDH897090DH897091
length1,1771,016
definitionDH897090|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J04, 5' end.DH897091|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,843,370 - 43,844,559)(44,029,307 - 44,030,321)
sequence
gaattctagacttctctggctcttccaatagctgcaatgagaaatggtgc
taacaacataggagccaaaaatctatatatctgaagggagggcaggactt
gaggtgctgggtgacctagtgatggccacagctaaaggtgccgtggactg
gactcagttggtccctcaaccctcagggaaacagggtcccggtattcagg
tgagcaaggagtcagcaaaaagtgacaaactgacaaagagagagtgctgt
atctgaatgtcatttttcaaagcaagcatcagacttataataacagaaga
aaataaagaagttaggtgacacatcagctgaggtacattgaggttacccg
atgcttaatgactctttacacaaaacagaagaatacatccatgaagactg
gcaggaactaggcaatgtaacaactgagacaaaatcagctctatctaaaa
tcagctattcacaggagccaggggaaagggctaatacactcaggtacgat
actagtttattgttaaacccaccaccagcagtcccttagtaaataattat
gttattcctcttgacctagtgaaaaacacacaccacggaagttctgttct
gctaaccttttcatgaatgtctctttcaatactggaggcagtttgcccga
atgagtaacattcttatgaaattccaagctcagggtctgctcaaggactg
cctaggatattggtgaaggccaggaagcaagttcaacctaatttaggtat
ttgtcaaaacattccttggaggcacctataataaaacaatactgaaagag
agcacacagagccattcaccaactaaagcaaggacaagtttggagcattc
gtgtcatgggatggcaaggctccaggagactaagtttccatgaaactttt
ggcctcaggactgtgtccaagattttgggcctgccactcagtttttactg
gagtgggtgtggcataaaggcaaaccagagctcaaaagaagtacatccac
agtgatatctggaagaagaacgttaaactggggccagaatacaatgggat
atgcctctagtcacactgctagagagctgagccagaagaatgcctgagca
ggaatcaggctgcagatactatgtcatcagtgtctacttaacttggacac
attacataacctctagggatcagatga
ctgtgtcctcttccgtctcgtgcctagagcatcatcaggctgctgtccca
agtcctctgtccccggtgctgccagttagggatcagtctgagtttcctca
gctgttccactaagggccccagcctttttcctgcagatgagcagattccc
tctcacgcctcaggacagagcctcacaaacaccagcatctgtgaggatgt
gggatctttggtgagtttctgtgaccagaaggaaaagaatcaaagctgta
tcctttcccccactaagagctgtctctcctcaggctcaaaggttaatgct
ttctttgcagtttcccaggttgaactccctgggtcccatcttctagtgac
gcagctttgagagggcacagctcagtccagtgacatgtgatgcctgcacc
tgtctcgtgggccacatatttctagattgcgtgaatgtcatgtactaagt
cgtttgacaaactgatgtctacaaaatggggactcagagtgcttgctggc
agggctatagacttcccttcttttgtgctagggatctttattgcgtctct
ggtcactagaatgcaaagaatacaaagaggaaggaagcatggcccatggt
ctcagtgccgccgtgtagcagggaagacccatgaatactgccaatacatt
gtcataattactgtgaccccggaattctgaggtagggttggggagcccac
agagggctgggcagaacatggttggctgatggtcatagctgcttgccaaa
gaactggccagacaggcggtcacagctgggaaggtggcctctgccttgga
ggggtggtgtggtaagacatgcaaagttcagagcagttgccagcagcttc
ttgggactttgccattttcttgggagactttcatctctctctagatcctc
ctctgctgccaccctggagcagaaaacactaagagttgttggggctcccc
ccatcaaagggctatcctgagaagttcaaagccattgagataaaatggat
actcaggctccgtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43843370_43844559
seq2: B6Ng01-082J04.b_49_1225

seq1  GAATTCTAGACTTCTCTGGCTCTTCCAATAGCTGCAATGAGAAATGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACTTCTCTGGCTCTTCCAATAGCTGCAATGAGAAATGGTGC  50

seq1  TAACAACATAGGAGCCAAAAATCTATATATCTGAAGGGAGGGCAGGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACATAGGAGCCAAAAATCTATATATCTGAAGGGAGGGCAGGACTT  100

seq1  GAGGTGCTGGGTGACCTAGTGATGGCCACAGCTAAAGGTGCCGTGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTGGGTGACCTAGTGATGGCCACAGCTAAAGGTGCCGTGGACTG  150

seq1  GACTCAGTTGGTCCCTCAACCCTCAGGGAAACAGGGTCCCGGTATTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTTGGTCCCTCAACCCTCAGGGAAACAGGGTCCCGGTATTCAGG  200

seq1  TGAGCAAGGAGTCAGCAAAAAGTGACAAACTGACAAAGAGAGAGTGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGGAGTCAGCAAAAAGTGACAAACTGACAAAGAGAGAGTGCTGT  250

seq1  ATCTGAATGTCATTTTTCAAAGCAAGCATCAGACTTATAATAACAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATGTCATTTTTCAAAGCAAGCATCAGACTTATAATAACAGAAGA  300

seq1  AAATAAAGAAGTTAGGTGACACATCAGCTGAGGTACATTGAGGTTACCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAAGTTAGGTGACACATCAGCTGAGGTACATTGAGGTTACCCG  350

seq1  ATGCTTAATGACTCTTTACACAAAACAGAAGAATACATCCATGAAGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAATGACTCTTTACACAAAACAGAAGAATACATCCATGAAGACTG  400

seq1  GCAGGAACTAGGCAATGTAACAACTGAGACAAAATCAGCTCTATCTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACTAGGCAATGTAACAACTGAGACAAAATCAGCTCTATCTAAAA  450

seq1  TCAGCTATTCACAGGAGCCAGGGGAAAGGGCTAATACACTCAGGTACGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATTCACAGGAGCCAGGGGAAAGGGCTAATACACTCAGGTACGAT  500

seq1  ACTAGTTTATTGTTAAACCCACCACCAGCAGTCCCTTAGTAAATAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTTATTGTTAAACCCACCACCAGCAGTCCCTTAGTAAATAATTAT  550

seq1  GTTATTCCTCTTGACCTAGTGAAAAACACACACCACGGAAGTTCTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCTCTTGACCTAGTGAAAAACACACACCACGGAAGTTCTGTTCT  600

seq1  GCTAACCTTTTCATGAATGTCTCTTTCAATACTGGAGGCAGTTTGCCCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCTTTTCATGAATGTCTCTTTCAATACTGGAGGCAGTTTGCCCGA  650

seq1  ATGAGTAACATTCTTATGAAATTCCAAGCTCAGGGTCTGCTCAAGGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAACATTCTTATGAAATTCCAAGCTCAGGGTCTGCTCAAGGACTG  700

seq1  CCTAGGATATTGGTGAAGGCCAGGAAGCAAGTTCAACCTAATTTAGGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGATATTGGTGAAGGCCAGGAAGCAAGTTCAACCTAATTTAGGTAT  750

seq1  TTGTCAAAACATTCCTTGGAGGCACCTATAATAAAACAATACTGAAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAAACATTCCTTGGAGGCACCTATAATAAAACAATACTGAAAGAG  800

seq1  AGCACACAGAGCCATTCACCAACTAAAGCAAGGACAAGTTTGGAGCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAGAGCCATTCACCAACTAAAGCAAGGACAAGTTTGGAGCATTC  850

seq1  GTGTCATGGGATGGCAAGGCTCCAGGAGACTAAGTTTCCATGAAACTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATGGGATGGCAAGGCTCCAGGAGACTAAGTTTCCATGAAACTTTT  900

seq1  GGCCTCAGGACTGTGTCCAAGATTTTGGGCCTGCCACTCAGTTTTTACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGGACTGTGTCCAAGATTTTGGGCCTGCCACTCAGTTTTTACTG  950

seq1  GAGTGGGTGTGGCATAAAGGCAAACCAGAGCTCAAAAAGAAAGTACATCC  1000
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  GAGTGGGTGTGGCATAAAGGCAAACCAGAGCTCAAAA--GAAGTACATCC  998

seq1  AACAGTGATAATCTGGAAG-AGAACGTTATACTGGGGCCAG-ATACAATG  1048
       |||||||| ||||||||| ||||||||| ||||||||||| ||||||||
seq2  -ACAGTGAT-ATCTGGAAGAAGAACGTTAAACTGGGGCCAGAATACAATG  1046

seq1  GGATATGCCTCTAGGTCACACTGCTAGAGAAGCTGAGGCAGGAGGATGGC  1098
      ||||||||||||| ||||||||||||||| ||||||| ||| || || ||
seq2  GGATATGCCTCTA-GTCACACTGCTAGAG-AGCTGAGCCAGAAGAAT-GC  1093

seq1  TTGAGCAGGAATTCAGGGCTGCAGTATACTATGTCAATCAGTTGTCTACA  1148
       |||||||||| ||| |||||||| |||||||||| ||||| ||||||| 
seq2  CTGAGCAGGAA-TCA-GGCTGCAG-ATACTATGTC-ATCAG-TGTCTAC-  1137

seq1  TTAACTTTGACATCAATACAATAACCTCTGGGGATCAGATGA  1190
      ||||||| |||| || ||| ||||||||| ||||||||||||
seq2  TTAACTTGGACA-CATTAC-ATAACCTCTAGGGATCAGATGA  1177

seq1: chr19_44029307_44030321
seq2: B6Ng01-082J04.g_76_1090 (reverse)

seq1  GCAC-GAGCCTGGGTATTCAATTTAATCTCACT-GCTTTGGACTTACTCA  48
      |||| ||||||| ||| || |||| |||||| | |||||| |||| ||||
seq2  GCACGGAGCCTGAGTA-TCCATTTTATCTCAATGGCTTTGAACTT-CTCA  48

seq1  GGATAGGCCCTTTGGTTGGGGTGGAGCCCCAAC-ACTCTTAGTG-TTTCT  96
      ||||| |||||||| |  ||| ||||||||||| |||||||||| |||||
seq2  GGATA-GCCCTTTGAT--GGGGGGAGCCCCAACAACTCTTAGTGTTTTCT  95

seq1  GCCTCAGGGTGGCAAGCAGAGGA-GATCTAGAGAAGAGATGAAAGTCT-C  144
      ||  ||||||||| ||||||||| ||||||||| |||||||||||||| |
seq2  GCTCCAGGGTGGC-AGCAGAGGAGGATCTAGAG-AGAGATGAAAGTCTCC  143

seq1  CAAGAAAATGGCAAAGTCCCAAGGAGCTGCTGGCAACTGCTCTGAAC-TT  193
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  CAAGAAAATGGCAAAGTCCCAAGAAGCTGCTGGCAACTGCTCTGAACTTT  193

seq1  GCATGTCTTTACCACACCACCCCTCCAAGGCAGAGGCCACCTTCCCAGCT  243
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTC-TTACCACACCACCCCTCCAAGGCAGAGGCCACCTTCCCAGCT  242

seq1  GTGACCGCCTGTCTGGCCAGTTCTTTGGC-AGCAGCTATGACCATCAGCC  292
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGACCGCCTGTCTGGCCAGTTCTTTGGCAAGCAGCTATGACCATCAGCC  292

seq1  AACCATGTTCTGCCCAGCCCTCTGTGGGCTCCCCAACCCTACCTCAGAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGTTCTGCCCAGCCCTCTGTGGGCTCCCCAACCCTACCTCAGAAT  342

seq1  TCCGGGGTCACAGTAATTATGACAATGTATTGGCAGTATTCATGGGTCTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGGTCACAGTAATTATGACAATGTATTGGCAGTATTCATGGGTCTT  392

seq1  CCCTGCTACACGGCGGCACTGAGACCATGGGCCATGCTTCCTTCCTCTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTACACGGCGGCACTGAGACCATGGGCCATGCTTCCTTCCTCTTT  442

seq1  GTATTCTTTGCATTCTAGTGACCAGAGACGCAATAAAGATCCCTAGCACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTTTGCATTCTAGTGACCAGAGACGCAATAAAGATCCCTAGCACA  492

seq1  AAAGAAGGGAAGTCTATAGCCCTGCCAGCAAGCACTCTGAGTCCCCATTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGGAAGTCTATAGCCCTGCCAGCAAGCACTCTGAGTCCCCATTT  542

seq1  TGTAGACATCAGTTTGTCAAACGACTTAGTACATGACATTCACGCAATCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACATCAGTTTGTCAAACGACTTAGTACATGACATTCACGCAATCT  592

seq1  AGAAATATGTGGCCCACGAGACAGGTGCAGGCATCACATGTCACTGGACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATGTGGCCCACGAGACAGGTGCAGGCATCACATGTCACTGGACT  642

seq1  GAGCTGTGCCCTCTCAAAGCTGCGTCACTAGAAGATGGGACCCAGGGAGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGCCCTCTCAAAGCTGCGTCACTAGAAGATGGGACCCAGGGAGT  692

seq1  TCAACCTGGGAAACTGCAAAGAAAGCATTAACCTTTGAGCCTGAGGAGAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTGGGAAACTGCAAAGAAAGCATTAACCTTTGAGCCTGAGGAGAG  742

seq1  ACAGCTCTTAGTGGGGGAAAGGATACAGCTTTGATTCTTTTCCTTCTGGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTTAGTGGGGGAAAGGATACAGCTTTGATTCTTTTCCTTCTGGT  792

seq1  CACAGAAACTCACCAAAGATCCCACATCCTCACAGATGCTGGTGTTTGTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAACTCACCAAAGATCCCACATCCTCACAGATGCTGGTGTTTGTG  842

seq1  AGGCTCTGTCCTGAGGCGTGAGAGGGAATCTGCTCATCTGCAGGAAAAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTCCTGAGGCGTGAGAGGGAATCTGCTCATCTGCAGGAAAAAG  892

seq1  GCTGGGGCCCTTAGTGGAACAGCTGAGGAAACTCAGACTGATCCCTAACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCCCTTAGTGGAACAGCTGAGGAAACTCAGACTGATCCCTAACT  942

seq1  GGCAGCACCGGGGACAGAGGACTTGGGACAGCAGCCTGATGATGCTCTAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCACCGGGGACAGAGGACTTGGGACAGCAGCCTGATGATGCTCTAG  992

seq1  GCACGAGACGGAAGAGGACACAG  1015
      |||||||||||||||||||||||
seq2  GCACGAGACGGAAGAGGACACAG  1015