BAC Information

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BAC

Clone NameB6Ng01-082L20
Chromosome19 (Build37)
Map Location 56,384,805 - 56,512,860
singlet/doubletdoublet
Overlap geneHabp2, Nrap, Casp7
Upstream geneZdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr, LOC100043484
Downstream gene9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082L20.bB6Ng01-082L20.g
ACCDH897206DH897207
length1,1591,046
definitionDH897206|Mus musculus domesticus DNA, BAC clone: B6Ng01-082L20, 5' end.DH897207|Mus musculus domesticus DNA, BAC clone: B6Ng01-082L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,511,680 - 56,512,860)(56,384,805 - 56,385,845)
sequence
gaattctcactcaacaaggggtctatgtctcacaaagggaaggcttgtac
cgaacagacaaacccagggcaaacccagggcttggtaaataataagaaac
cacactcgttcctggcattgcatggtacctgccatggtcccagcctaaag
gatcctggtttgtgatgcaatgcagagtctgagcactgaaacctgaccct
taacacatttctaaagcttacctaattaattaattaatcaatcaattaat
caattaatttttcaactgcaaaagcaacaatggttttctccatcacctac
agaattattataaggatgatggcacgaagatttaaaatgacctaaaatga
cataatttttatagttacatgcataattattgcttattgtgaaagtcttg
ccattattattaatcttagtacaacaaaggctgggggggggtgcattccg
ttttctcagggagaggaatgagttaagagtggtggtccccgaagatggac
acacctaactctggaatctgtgaccaggttaccctctacgacaaaaagga
cttttcagatgccagtaaaatgataagactcccgatggggaaatgggaaa
tggctatggagtaccaggcagaccaagcccgaggaagggaagcaggctga
gagagaactgtgtttgcaaggttgacagggaagagaccgagagatcgagg
aggggtttttaaatgaggaagggccgtaagccaagggatctaggaggtct
aagattgctaggaaaaagaggaaaccaatttccctatgtgcttccagcag
agaggccaccctgctctttcctctgggattctggcctctaggccaccaag
atgatgtttatgtgacatgtgtcactctgtctgtaggatgcactgggtat
ctgttgtccccaacgcttgctcatgagtacagtacctcagatcgagtaca
taggctttactgcttggacagtggttttcttcattccgtgtgttgcatgt
gcgtgcatgctgtgtatgtgctgtgcacactgggtgcaagaactgtgtca
tgtcgggtgtcttctgaattgatcttcctttattttgagaacacagtctg
tcgattggagcttgcacagctaaggtgcaggccagtggcttcagaattcc
tttatctaa
gaattcactaatctgtattcacacacacacacacacactcactcacactc
tcactcacacatacactcactcactcacactctcacacacacacactcac
tcacatacacactcacacacactcacacacactcactcacacacacacac
actcactcacacacacactcacacactcacacacacacactcacacacac
acactcacacacacacacgcacacacacacacacacacacacatacacac
acacacacacacacacacactcaccttggaagttgattcctccaggaagt
aggcactgatcttttcctgagatgggttgtgtgggggacttatacactga
gtcactgctatgggtaggtacaccatcccaagagatttacccttgtctat
gagaaaaagaaaattcataaattaagaacctaaaattcagagaggtggtt
aacttacccatggtcacatagctctcaagggccacagacaagtttctacc
tagatcagactctctgagaacttccagattggtccataaggactttgtga
cccttacattttggggaagggggatgttttggtttttgttctgttgcata
tcctccatccatctggctttatgcatatttggtctaggctttctgtgaca
ttttgccagggtatcaatgatctgtctgtgccctatgttgttccgtcatt
taggagagaatgaccccagaagagtgccaccattcagagtgttacacctc
ctcctaacatgccctctgggtcccactttgctgttttcacagtgcttccg
gcatgcaggccaaaccccctgccagaatggcggagtctgttcccgacaca
gacggagatccaaggtttacctgtgcctgtccagaccattataaggggaa
attctgtgaaataggtatgggtcttcagtactaccacacgtcaaagactc
tgggacagtgagaccgcgagtgtccttttcctgtcaagttgtctctacac
acatggcccagagtttcccaagctcacctcctctagtcttcaacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_56511680_56512860
seq2: B6Ng01-082L20.b_48_1206 (reverse)

seq1  TTAGATAAAGGAGAATCCTGGAGGCCCACTGGCCTGCCACCCTAGCTGGG  50
      ||||||||||  |||| ||| ||  ||||||||||| |||| ||||||  
seq2  TTAGATAAAG--GAATTCTGAAG--CCACTGGCCTG-CACCTTAGCTG--  43

seq1  TTGGCAAGCTCCAAATTCCGACAGACTGTG-TCTCAAAAATTAAAGTGAA  99
         |||||||||||    |||||||||||| ||||||||  ||||| |||
seq2  --TGCAAGCTCCAA---TCGACAGACTGTGTTCTCAAAA--TAAAG-GAA  85

seq1  GATCAATTCAGGAAGACACCCGACATGGACACAGGTCCCTGCACCCAGTT  149
      |||||||||| ||||||||||||||| |||||| || | ||||||||| |
seq2  GATCAATTCA-GAAGACACCCGACAT-GACACA-GTTCTTGCACCCAG-T  131

seq1  GTGCACAAGCACATACACACGCATGCACGCACATGCAACACACGGAATGA  199
      |||||| |||||||||||| ||||||||||||||||||||||||||||| 
seq2  GTGCAC-AGCACATACACA-GCATGCACGCACATGCAACACACGGAATG-  178

seq1  AAGAAAACCACTGTCCAAGCAGTAAAGCCTATGTACTCGATCTGAGGTAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACCACTGTCCAAGCAGTAAAGCCTATGTACTCGATCTGAGGTAC  228

seq1  TTGTACTCATGAGCAAGCGTTGGGGACAACAGATACCCAGTGCATCCTAC  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTACTCATGAGCAAGCGTTGGGGACAACAGATACCCAGTGCATCCTAC  277

seq1  AGACAGAGTGACACATGTCACATAAACATCATCTTGGTGGCCTAGAGGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTGACACATGTCACATAAACATCATCTTGGTGGCCTAGAGGCC  327

seq1  AGAATCCCAGAGGAAAGAGCAGGGTGGCCTCTCTGCTGGAAGCACATAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCAGAGGAAAGAGCAGGGTGGCCTCTCTGCTGGAAGCACATAGG  377

seq1  GAAATTGGTTTCCTCTTTTTCCTAGCAATCTTAGACCTCCTAGATCCCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGTTTCCTCTTTTTCCTAGCAATCTTAGACCTCCTAGATCCCTT  427

seq1  GGCTTACGGCCCTTCCTCATTTAAAAACCCCTCCTCGATCTCTCGGTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACGGCCCTTCCTCATTTAAAAACCCCTCCTCGATCTCTCGGTCTC  477

seq1  TTCCCTGTCAACCTTGCAAACACAGTTCTCTCTCAGCCTGCTTCCCTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTCAACCTTGCAAACACAGTTCTCTCTCAGCCTGCTTCCCTTCC  527

seq1  TCGGGCTTGGTCTGCCTGGTACTCCATAGCCATTTCCCATTTCCCCATCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGCTTGGTCTGCCTGGTACTCCATAGCCATTTCCCATTTCCCCATCG  577

seq1  GGAGTCTTATCATTTTACTGGCATCTGAAAAGTCCTTTTTGTCGTAGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTTATCATTTTACTGGCATCTGAAAAGTCCTTTTTGTCGTAGAGG  627

seq1  GTAACCTGGTCACAGATTCCAGAGTTAGGTGTGTCCATCTTCGGGGACCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTGGTCACAGATTCCAGAGTTAGGTGTGTCCATCTTCGGGGACCA  677

seq1  CCACTCTTAACTCATTCCTCTCCCTGAGAAAACGGAATGCACCCCCCCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTAACTCATTCCTCTCCCTGAGAAAACGGAATGCACCCCCCCCC  727

seq1  AGCCTTTGTTGTACTAAGATTAATAATAATGGCAAGACTTTCACAATAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGTTGTACTAAGATTAATAATAATGGCAAGACTTTCACAATAAG  777

seq1  CAATAATTATGCATGTAACTATAAAAATTATGTCATTTTAGGTCATTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTATGCATGTAACTATAAAAATTATGTCATTTTAGGTCATTTTA  827

seq1  AATCTTCGTGCCATCATCCTTATAATAATTCTGTAGGTGATGGAGAAAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCGTGCCATCATCCTTATAATAATTCTGTAGGTGATGGAGAAAAC  877

seq1  CATTGTTGCTTTTGCAGTTGAAAAATTAATTGATTAATTGATTGATTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGCTTTTGCAGTTGAAAAATTAATTGATTAATTGATTGATTAAT  927

seq1  TAATTAATTAGGTAAGCTTTAGAAATGTGTTAAGGGTCAGGTTTCAGTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTAGGTAAGCTTTAGAAATGTGTTAAGGGTCAGGTTTCAGTGC  977

seq1  TCAGACTCTGCATTGCATCACAAACCAGGATCCTTTAGGCTGGGACCATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCTGCATTGCATCACAAACCAGGATCCTTTAGGCTGGGACCATG  1027

seq1  GCAGGTACCATGCAATGCCAGGAACGAGTGTGGTTTCTTATTATTTACCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTACCATGCAATGCCAGGAACGAGTGTGGTTTCTTATTATTTACCA  1077

seq1  AGCCCTGGGTTTGCCCTGGGTTTGTCTGTTCGGTACAAGCCTTCCCTTTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGGTTTGCCCTGGGTTTGTCTGTTCGGTACAAGCCTTCCCTTTG  1127

seq1  TGAGACATAGACCCCTTGTTGAGTGAGAATTC  1181
      ||||||||||||||||||||||||||||||||
seq2  TGAGACATAGACCCCTTGTTGAGTGAGAATTC  1159

seq1: chr19_56384805_56385845
seq2: B6Ng01-082L20.g_68_1113

seq1  GAATTCACTAATCTGTATTCACACACACACACACACACTCACTCACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATCTGTATTCACACACACACACACACACTCACTCACACTC  50

seq1  TCACTCACACATACACTCACTCACTCACACTCTCACACACACACACTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACACATACACTCACTCACTCACACTCTCACACACACACACTCAC  100

seq1  TCACATACACACTCACACACACTCACACACACTCACTCACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACACACTCACACACACTCACACACACTCACTCACACACACACAC  150

seq1  ACTCACTCACACACACACTCACACACTCACACACACACACTCACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCACACACACACTCACACACTCACACACACACACTCACACACAC  200

seq1  ACACTCACACACACACACGCACACACACACACACACACACACATACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACACACACGCACACACACACACACACACACACATACACAC  250

seq1  ACACACACACACACACACACTCACCTTGGAAGTTGATTCCTCCAGGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACTCACCTTGGAAGTTGATTCCTCCAGGAAGT  300

seq1  AGGCACTGATCTTTTCCTGAGATGGGTTGTGTGGGGGACTTATACACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTGATCTTTTCCTGAGATGGGTTGTGTGGGGGACTTATACACTGA  350

seq1  GTCACTGCTATGGGTAGGTACACCATCCCAAGAGATTTACCCTTGTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGCTATGGGTAGGTACACCATCCCAAGAGATTTACCCTTGTCTAT  400

seq1  GAGAAAAAGAAAATTCATAAATTAAGAACCTAAAATTCAGAGAGGTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGAAAATTCATAAATTAAGAACCTAAAATTCAGAGAGGTGGTT  450

seq1  AACTTACCCATGGTCACATAGCTCTCAAGGGCCACAGACAAGTTTCTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACCCATGGTCACATAGCTCTCAAGGGCCACAGACAAGTTTCTACC  500

seq1  TAGATCAGACTCTCTGAGAACTTCCAGATTGGTCCATAAGGACTTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAGACTCTCTGAGAACTTCCAGATTGGTCCATAAGGACTTTGTGA  550

seq1  CCCTTACATTTTGGGGAAGGGGGATGTTT--GGTTTTGTTCTGTTGCATA  598
      |||||||||||||||||||||||||||||  | |||||||||||||||||
seq2  CCCTTACATTTTGGGGAAGGGGGATGTTTTGGTTTTTGTTCTGTTGCATA  600

seq1  TCCTCCATCCATCTGGCTTTATGCATA-TTGGTCTAGGCTTTCTGTGACA  647
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCTCCATCCATCTGGCTTTATGCATATTTGGTCTAGGCTTTCTGTGACA  650

seq1  -TTTGCCAGGGTATCAATGATCTGTCTGTGCCCTATGTTGTTCCGTCATT  696
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCAGGGTATCAATGATCTGTCTGTGCCCTATGTTGTTCCGTCATT  700

seq1  TAGGAGAGAATGACCCCAGAAGAGTGCCACCATTCAGAGTGTTACACCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGAATGACCCCAGAAGAGTGCCACCATTCAGAGTGTTACACCTC  750

seq1  CTCCTAACATGCCCTCTGGGTCCCAC-TTGCTGTTTTCACAGTGCTTCCG  795
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCCTAACATGCCCTCTGGGTCCCACTTTGCTGTTTTCACAGTGCTTCCG  800

seq1  GCATGCAGGCCAAA-CCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACA  844
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCATGCAGGCCAAACCCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACA  850

seq1  GACGGAGATCC-AGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAA  893
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  GACGGAGATCCAAGGTTTACCTGTGCCTGTCCAGACCATTATAAGGGGAA  900

seq1  ATTCTGTGAAATAGGTATGGGTCTTCAGTACTACCACACCGTCAAAGACT  943
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTCTGTGAAATAGGTATGGGTCTTCAGTACTACCACA-CGTCAAAGACT  949

seq1  CTGGGACAAGTGAGACCGCGAGTG-CCTTTT-CTGTCCAAGTGTCTCCTA  991
      ||||||| |||||||||||||||| |||||| ||||| |  ||||| |||
seq2  CTGGGAC-AGTGAGACCGCGAGTGTCCTTTTCCTGTCAAGTTGTCT-CTA  997

seq1  CACACATGGCCCAGAGTTTCCCAAGCTCCACTCCTCTAGTCTTCCAACCT  1041
      ||||||||||||||||||||||||||||  ||||||||||||| ||||||
seq2  CACACATGGCCCAGAGTTTCCCAAGCTCACCTCCTCTAGTCTT-CAACCT  1046