BAC Information

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BAC

Clone NameB6Ng01-083K04
Chromosome19 (Build37)
Map Location 49,679,186 - 49,680,413
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083K04.bB6Ng01-083K04.g
ACCDH897843DH897844
length1,2121,072
definitionDH897843|Mus musculus domesticus DNA, BAC clone: B6Ng01-083K04, 5' end.DH897844|Mus musculus domesticus DNA, BAC clone: B6Ng01-083K04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgcttaacactcagaggtgcagtttattcccatttctatctt
cctgaggaatcattgttgtctccccatgcctttaaactcagttatcatta
gaatgttcaccaagaaggcatgtgtctaggagcatcagtgagcagcccaa
agtatgaagtcatataacaaactccacttgaaaaccttccttgccagact
ctattcacctttttattccacaatgctggtgaaattttttctatcttttt
acctaaatcgatcagaaaaggcatcttttcagtcctcggttagagagggt
tttttttttttcatgtttgtgtttcatgagaataatattatttttgtcta
gagccataaaaatttggatgctacattctgaatccctaatacagtgtaga
tactgacatttaagtacttaaaatcgagaacctgagggggtcccctgcag
taaagtgcttgccttgaaagcatggatatccatccactcaggtctgatct
ctagaacctatagaattataacagaagaaaagattctagtgttgtatgct
ggttataatggagtgcagtgctggtgagtcagaggcaggtagaactctag
gatcacttgccaaatagtctacctgactggcaagctctaggccagtgaaa
gatcctagattgaaactgtacaatggagagagtacctgaataaatgacag
tcactaggcacatgccccactcccacaggagcacaaatggaaggcactaa
tgtacaaatatgcatttacataagtaaacaactctaaatgtcatcagtgg
caagtcatgaagtggtccttttatgctgtgtctgttggcattggtaatat
tctagtacaaattccataatcctctcacaggtgatagattcctgtcggac
atttccatatacaacatgtacccaacatagactgatttcttcatttgaat
tattgatacgtaaaaacttcagtcatttagcatgcacagatggcttcttt
ggttgaacactatacagaatcttacttttttttctttttcacagaatatt
tcctgaaagatcatatgagtagtaattgataaaacagcctttgccttctt
taggtctagcgattccattaaagagtaagtgggtcaattaattagttcca
aagtagcttatatgcctatgagtacacactcccagctactgccaagtata
ggccatattcca

gaattcagtcctgttcccccttcaatacctgatcatgttccccttttccc
cttcatgttcactctccctccctccctcttctccttgtgattgcgttctt
ctccctctcaagtgggattgaggcgtcttcacttgggccttttggcttgt
taaccttcttgagttctatggattgtgtcctgggtattctgtgtttcttt
ctttcttttcttttttttttttttctttccaaatatctacttattagtga
gtccataccatgtatatcatttgggtctgacttacctcactcagaatgtt
attttatagttctatccctttgcctgaaaaactcatcattcttaatagct
gaaaaaaattcctttgtgtaaacaaaccacattttctgtatccatttgtt
tattgttgggcatctgggttgtttccagcttctggctctcacaagcaagg
cctctatgagcataatggacacatgcctatctggtatggtgggacaaata
ttgagtatatgcccaagagtggtacagttgggtcttcaggtagacctatt
cccaattttctgaggaacctccagatttggtttccacagtggttgtacca
atttgcaatcccaccagcaatggaggagtgttcctttttctccacatcct
taccagcatgtgctgtcacctgaatttttttttatcttagacattcggat
tggtgtaaggtggaatctcagggtcatttttgatttacatttcccagatc
actaaggacttagaacatttgtttaagtgcttctcagccattcaagatcc
ctctgttgtgaattctctgttagttctatacctccccccccccttttttt
gattgggttatttggttttttttttgttgttgtttttttttttttttttt
tgggggttagcttctgagttcttaaaaatttggatataccctctatcaga
tgtgagtaatgaaagatttttccctatcgcgatttgtctaggaatatgtc
ttgctacacaggtccagttcagagaagtccatgatcaatctttgattaga
gccgaagcatgggagccatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49679186_49680413
seq2: B6Ng01-083K04.b_47_1258 (reverse)

seq1  TGGAATTTAATGGCCTATACCTTGTGCACGTAGCTGTGATGTTGTTACTT  50
      ||||||   |||||||||| |||| ||| ||||||| || ||   |||  
seq2  TGGAAT---ATGGCCTATA-CTTG-GCA-GTAGCTGGGA-GTGTGTAC--  41

seq1  TCATTAGCCATATAAGCTACTGTTGTGACTAGAATAAATATTGACCCACT  100
      ||| ||| ||||||||||||| |||  |||  ||| |  |||||||||||
seq2  TCA-TAGGCATATAAGCTACT-TTGGAACT--AATTA--ATTGACCCACT  85

seq1  TAACTCTTT-ATGGAATCTGCTAGACCTAAAGAA-GCAAA-GCTGTTTTA  147
      | ||||||| |||||||| ||||||||||||||| ||||| |||||||||
seq2  T-ACTCTTTAATGGAATC-GCTAGACCTAAAGAAGGCAAAGGCTGTTTTA  133

seq1  TCAATTACTACTTCATATGATCTTTCAGGAAATA-TCTGTGAAAAAGAAA  196
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  TCAATTACTAC-TCATATGATCTTTCAGGAAATATTCTGTGAAAAAGAAA  182

seq1  AAAAAGTAAGATTCTGTATAGTGTTCAACCAAAGAAGCCATCTGTGCATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAGATTCTGTATAGTGTTCAACCAAAGAAGCCATCTGTGCATG  232

seq1  CTAAAATGACTGAAGTTATTTACGTATCAATAATTCAAATGAAGAAATCA  296
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CT-AAATGACTGAAGTT-TTTACGTATCAATAATTCAAATGAAGAAATCA  280

seq1  GTCTATGTTGGGTACATGTTGTATATGGAAATGTCCGACAGGAATCTATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTTGGGTACATGTTGTATATGGAAATGTCCGACAGGAATCTATC  330

seq1  ACCTGTGAGAGGATTATGGAATTTGTACTAGAATATTACCAATGCCAACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAGAGGATTATGGAATTTGTACTAGAATATTACCAATGCCAACA  380

seq1  GACACAGCATAAAAGGACCACTTCATGACTTGCCACTGATGACATTTAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCATAAAAGGACCACTTCATGACTTGCCACTGATGACATTTAGA  430

seq1  GTTGTTTACTTATGTAAATGCATATTTGTACATTAGTGCCTTCCATTTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTACTTATGTAAATGCATATTTGTACATTAGTGCCTTCCATTTGT  480

seq1  GCTCCTGTGGGAGTGGGGCATGTGCCTAGTGACTGTCATTTATTCAGGTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTGGGAGTGGGGCATGTGCCTAGTGACTGTCATTTATTCAGGTA  530

seq1  CTCTCTCCATTGTACAGTTTCAATCTAGGATCTTTCACTGGCCTAGAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCATTGTACAGTTTCAATCTAGGATCTTTCACTGGCCTAGAGCT  580

seq1  TGCCAGTCAGGTAGACTATTTGGCAAGTGATCCTAGAGTTCTACCTGCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTCAGGTAGACTATTTGGCAAGTGATCCTAGAGTTCTACCTGCCT  630

seq1  CTGACTCACCAGCACTGCACTCCATTATAACCAGCATACAACACTAGAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCACCAGCACTGCACTCCATTATAACCAGCATACAACACTAGAAT  680

seq1  CTTTTCTTCTGTTATAATTCTATAGGTTCTAGAGATCAGACCTGAGTGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCTGTTATAATTCTATAGGTTCTAGAGATCAGACCTGAGTGGA  730

seq1  TGGATATCCATGCTTTCAAGGCAAGCACTTTACTGCAGGGGACCCCCTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATCCATGCTTTCAAGGCAAGCACTTTACTGCAGGGGACCCCCTCA  780

seq1  GGTTCTCGATTTTAAGTACTTAAATGTCAGTATCTACACTGTATTAGGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCGATTTTAAGTACTTAAATGTCAGTATCTACACTGTATTAGGGA  830

seq1  TTCAGAATGTAGCATCCAAATTTTTATGGCTCTAGACAAAAATAATATTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATGTAGCATCCAAATTTTTATGGCTCTAGACAAAAATAATATTA  880

seq1  TTCTCATGAAACACAAACATGAAAAAAAAAAAACCCTCTCTAACCGAGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGAAACACAAACATGAAAAAAAAAAAACCCTCTCTAACCGAGGA  930

seq1  CTGAAAAGATGCCTTTTCTGATCGATTTAGGTAAAAAGATAGAAAAAATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGATGCCTTTTCTGATCGATTTAGGTAAAAAGATAGAAAAAATT  980

seq1  TCACCAGCATTGTGGAATAAAAAGGTGAATAGAGTCTGGCAAGGAAGGTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGCATTGTGGAATAAAAAGGTGAATAGAGTCTGGCAAGGAAGGTT  1030

seq1  TTCAAGTGGAGTTTGTTATATGACTTCATACTTTGGGCTGCTCACTGATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGGAGTTTGTTATATGACTTCATACTTTGGGCTGCTCACTGATG  1080

seq1  CTCCTAGACACATGCCTTCTTGGTGAACATTCTAATGATAACTGAGTTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGACACATGCCTTCTTGGTGAACATTCTAATGATAACTGAGTTTA  1130

seq1  AAGGCATGGGGAGACAACAATGATTCCTCAGGAAGATAGAAATGGGAATA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGGGGAGACAACAATGATTCCTCAGGAAGATAGAAATGGGAATA  1180

seq1  AACTGCACCTCTGAGTGTTAAGCAATGAATTC  1228
      ||||||||||||||||||||||||||||||||
seq2  AACTGCACCTCTGAGTGTTAAGCAATGAATTC  1212


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