BAC Information

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BAC

Clone NameB6Ng01-084E15
Chromosome19 (Build37)
Map Location 4,230,156 - 4,362,000
singlet/doubletdoublet
Overlap genePold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11
Upstream geneEG665810, LOC100039218, Ighmbp2, Mrpl21, LOC665826, Cpt1a, Mtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1
Downstream geneLOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084E15.bB6Ng01-084E15.g
ACCDH898289DH898290
length1,195492
definitionDH898289|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E15, 5' end.DH898290|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,360,785 - 4,362,000)(4,230,156 - 4,230,680)
sequence
gaattctgatggacttggaataaagtaagtgctctctggtcctaagcctg
agatggttgtaaaatggcttttacacccgggaattcggacagtggcaaat
ttgagaccccagagcagtaggaaattgaggataatttcccagttactttg
tgaagtatgactcttgtctcactggtgattcatatacctagaaataaaaa
ctgtagatgaacttaaaaaccagttaagtctcttgagtctatcagtctga
tagaattgctgctaacattgtgggatttcttcctataaaaatgtgtaatc
atttatattttaaaagtatttaaacttaatggtgtttctggaaagtgctt
catactttccagatccacactgactggagaagaagtgcttcttatttact
ggtgtttatttcacaggatgccggatccagacttcacagtgaatgatgtc
aaaatgtgtgtgggtaagtaacaaacttttggcctgcctcttcatctttg
agggttaggaaccttaaaatatatgttttattagaaagaattgtttaatt
agcagctcagaattttccttaaaggacatttaaaaagaaaacagctgggc
atggtggtgcacacctttaatcccagcacttgggaggcagaggcaggtgg
atctctgagttcgaggccagcctggtctacagagtgagtgccaggacagc
caggggtacacagagaaaccctgtctggaaaaacaaacaaacaaaaacaa
caacaacaaaacaaaaaaaagaaaacaactctataaggaagagataggaa
gttactatatatgttcaggagaaatttttctcaaaagcaaaaacttttta
aaatttagttcatcggggctggtgagatggctcagtgggtaagagcaccc
gactgctctcccgaaggtccagagttcaaatctcagcaaccacatgttgg
ctcactaccatccgtaacgagatctgactccctcttctggagtgtctgag
acagctacagtgtacttacatataataaataatatttttttaaaaaattt
agttcatttactcctagcatggaagataactgttaattctgggaaattgc
agaaatggattgagttgtctgtgtttccacaaactgagcaaaggagccct
cctactcttgctattcatgaatcaatagtcatttcctactttgga
gaattctccctgtcccccttcccaactctgtagggtctcttctcccagat
gtccacgagacagatggagggatcagacctgagccaccccaaacaatggg
tcccagaaaggccttccaggtctttgcagtgtgcctgcacctccttcttc
ttcaacaagctaatgggggaaggctagcaagaggaagtccctggagacac
aaccttctgcccaccactggtgggtttctctttggaggggtcctcttctc
tgcctccacacacacgggaggccagccgaatgcttcctaacccaaatcac
aaagcttccaaaaaggagggcaaaggcctccaaccagccatccttgcacc
cctggaaggaagaaccggatgggctctccagagggtgattagtgctgggt
cagtccaagtgctggttcccagactcccacgggccagcattttcacccgc
tgccagcaagttggtgagggggaggtggtagtacgggttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4360785_4362000
seq2: B6Ng01-084E15.b_46_1240 (reverse)

seq1  TCCAAAGTAAGAAATAGAACTATTGTATTCCATAGAATAGCAAGAGTCAG  50
      ||||||||| |||||   ||||||| ||| ||| ||||||||||||| ||
seq2  TCCAAAGTAGGAAAT--GACTATTG-ATT-CAT-GAATAGCAAGAGT-AG  44

seq1  AAGAGCTCCTTTTGCTCATGTTTGTTGGAAACACAGACAACTCAATACCA  100
       || ||||| |||||||| ||||| ||||||||||||||||||||| |||
seq2  GAGGGCTCC-TTTGCTCA-GTTTG-TGGAAACACAGACAACTCAAT-CCA  90

seq1  TTTTACTGCATTTTCACAGAATATAACAGTTATCTTCCATGCCTAGGAGT  150
      |||  ||||| |||| |||||| |||||||||||||||||| ||||||| 
seq2  TTT--CTGCAATTTCCCAGAAT-TAACAGTTATCTTCCATG-CTAGGAG-  135

seq1  TAAATGAACTAAATTTTTTTTAAAAAAATATTTATTTATTATATGTAAGT  200
      |||||||||||||  ||||||||||||||| |||||||||||||||||||
seq2  TAAATGAACTAAA--TTTTTTAAAAAAATA-TTATTTATTATATGTAAGT  182

seq1  ACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTA  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACACTGTAGCTGTC-TCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTA  231

seq1  CGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCT  300
      |||||||| |||||||| ||||||||||||| ||||||||||||||||||
seq2  CGGATGGTAGTGAGCCAACATGTGGTTGCTGAGATTTGAACTCTGGACCT  281

seq1  TCGGGAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCC  331

seq1  GATGAACTAAATTTTAAAAAGTTTTTGCTTTTGAGAAAAATTTCTCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTAAATTTTAAAAAGTTTTTGCTTTTGAGAAAAATTTCTCCTGA  381

seq1  ACATATATAGTAACTTCCTATCTCTTCCTTATAGAGTTGTTTTCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATAGTAACTTCCTATCTCTTCCTTATAGAGTTGTTTTCTTTTTT  431

seq1  TTGTTTTGTTGTTGTTGTTTTTTGTTTGTTTGTTTTTTCCAGACAGGGTT  500
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  TTGTTTTGTTGTTGTTG-TTTTTGTTTGTTTG-TTTTTCCAGACAGGGTT  479

seq1  TCTCTGTGTACCCCTGGCTGTCCTGGCACTCACTCTGTAGACCAGGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTACCCCTGGCTGTCCTGGCACTCACTCTGTAGACCAGGCTGG  529

seq1  CCTCGAACTCAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAACTCAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  579

seq1  AGGTGTGCACCACCATGCCCAGCTGTTTTCTTTTTAAATGTCCTTTAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCACCACCATGCCCAGCTGTTTTCTTTTTAAATGTCCTTTAAGG  629

seq1  AAAATTCTGAGCTGCTAATTAAACAATTCTTTCTAATAAAACATATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTGAGCTGCTAATTAAACAATTCTTTCTAATAAAACATATATTT  679

seq1  TAAGGTTCCTAACCCTCAAAGATGAAGAGGCAGGCCAAAAGTTTGTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTCCTAACCCTCAAAGATGAAGAGGCAGGCCAAAAGTTTGTTACT  729

seq1  TACCCACACACATTTTGACATCATTCACTGTGAAGTCTGGATCCGGCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACACACATTTTGACATCATTCACTGTGAAGTCTGGATCCGGCATC  779

seq1  CTGTGAAATAAACACCAGTAAATAAGAAGCACTTCTTCTCCAGTCAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAATAAACACCAGTAAATAAGAAGCACTTCTTCTCCAGTCAGTGT  829

seq1  GGATCTGGAAAGTATGAAGCACTTTCCAGAAACACCATTAAGTTTAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGGAAAGTATGAAGCACTTTCCAGAAACACCATTAAGTTTAAATA  879

seq1  CTTTTAAAATATAAATGATTACACATTTTTATAGGAAGAAATCCCACAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAATATAAATGATTACACATTTTTATAGGAAGAAATCCCACAAT  929

seq1  GTTAGCAGCAATTCTATCAGACTGATAGACTCAAGAGACTTAACTGGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAGCAATTCTATCAGACTGATAGACTCAAGAGACTTAACTGGTTT  979

seq1  TTAAGTTCATCTACAGTTTTTATTTCTAGGTATATGAATCACCAGTGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTCATCTACAGTTTTTATTTCTAGGTATATGAATCACCAGTGAGA  1029

seq1  CAAGAGTCATACTTCACAAAGTAACTGGGAAATTATCCTCAATTTCCTAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCATACTTCACAAAGTAACTGGGAAATTATCCTCAATTTCCTAC  1079

seq1  TGCTCTGGGGTCTCAAATTTGCCACTGTCCGAATTCCCGGGTGTAAAAGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGGGTCTCAAATTTGCCACTGTCCGAATTCCCGGGTGTAAAAGC  1129

seq1  CATTTTACAACCATCTCAGGCTTAGGACCAGAGAGCACTTACTTTATTCC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACAACCATCTCAGGCTTAGGACCAGAGAGCACTTACTTTATTCC  1179

seq1  AAGTCCATCAGAATTC  1216
      ||||||||||||||||
seq2  AAGTCCATCAGAATTC  1195

seq1: chr19_4230156_4230680
seq2: B6Ng01-084E15.g_66_557

seq1  GAATTCTCCCTGTCCCCCTTCCCAACTCTGTAGGGTCTCTTCTCCCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGTCCCCCTTCCCAACTCTGTAGGGTCTCTTCTCCCAGAT  50

seq1  GTCCAGGAGACAGATGGAGGGATCAGACCTGAGCCACCCCAAACAATGGG  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGAGACAGATGGAGGGATCAGACCTGAGCCACCCCAAACAATGGG  100

seq1  TCCCAGAAAGGCCTTCCAGGTCTTTGCAGTGTGCCTGCAGCTCCTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCCAGAAAGGCCTTCCAGGTCTTTGCAGTGTGCCTGCACCTCCTTCTTC  150

seq1  TTCAAGAAGCTAATGGGGGAAGGCTAGCAAGAGGAGGTCCCTGGAGACAC  200
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCAACAAGCTAATGGGGGAAGGCTAGCAAGAGGAAGTCCCTGGAGACAC  200

seq1  AACCTTCTGCCCACCACTGGTGGGTTTCTCTTTGGAGGGGTCCTCTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTGCCCACCACTGGTGGGTTTCTCTTTGGAGGGGTCCTCTTCTC  250

seq1  TGCCTCCACACACACGGGAGGCCAGCCGAGTGCTTCCTAAGCCAGATCAC  300
      ||||||||||||||||||||||||||||| |||||||||| ||| |||||
seq2  TGCCTCCACACACACGGGAGGCCAGCCGAATGCTTCCTAACCCAAATCAC  300

seq1  AGAGCTTCCAAAAAGGAGGGCAAAGGCCTCCAACCAGCCATCCTTGCACC  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCCAAAAAGGAGGGCAAAGGCCTCCAACCAGCCATCCTTGCACC  350

seq1  CCTGGAAGGAAGAACCGGATGGGCTCTCCAGAGGGTGATTAGTGCTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGGAAGAACCGGATGGGCTCTCCAGAGGGTGATTAGTGCTGGGT  400

seq1  CAGTCCAAGTGCTGGTTCCCAGACTCCCACGGGCCAGCATTTTCACCCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAAGTGCTGGTTCCCAGACTCCCACGGGCCAGCATTTTCACCCGC  450

seq1  TGCCAGGAAGTTGGTGAGGGGGAGGTGGTAGTAGGGGTGAGTCAGTGATG  500
      |||||| |||||||||||||||||||||||||| ||||   |||      
seq2  TGCCAGCAAGTTGGTGAGGGGGAGGTGGTAGTACGGGT---TCAT-----  492

seq1  ACAGGAGCCCCAAAACAAAGGTCAT  525
                               
seq2  -------------------------  492