BAC Information

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BAC

Clone NameB6Ng01-084J09
Chromosome19 (Build37)
Map Location 48,882,501 - 49,014,936
singlet/doubletdoublet
Overlap geneLOC100042896
Upstream geneD19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576, Sorcs3
Downstream geneLOC629448, Siah1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084J09.bB6Ng01-084J09.g
ACCDH898499DH898500
length1,1431,122
definitionDH898499|Mus musculus domesticus DNA, BAC clone: B6Ng01-084J09, 5' end.DH898500|Mus musculus domesticus DNA, BAC clone: B6Ng01-084J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,882,501 - 48,883,647)(49,013,800 - 49,014,936)
sequence
gaattcaatgaggaatgcagttctcctatttttacacataatatcacaac
agacctaaagtccatgtctcttataaaactgtaaagtcagaaccatccca
taccttcttaaaaattacaaaactacattttcattacagcagactaccag
gtatcatcagacagcctggttgtaggccagtatgtcttccatatttacag
tgttcagaaggattagaacctaagtccctctgtgtgttcatcatgtagca
gcatctatctagcacccctcttctgttgccttgttaacacagttgcttgg
caacccatgtgccatgagtattacaaagttcattttacaaatgcaatgga
gtgttagatacaaaacaacagcagcaatcaaacaaagaactctagcaaca
aaagcagagaagaaaacaagaagaggaagaggaagaggaagaaaaaaccc
cagggtcaaactccagttctcatggaaactaaatatctctatagaattta
gagctaccaccttccaattttctgagtcattctagagcaaaactgacaaa
tacggtccaattttcctcttttaaaattgaagataaaggcatgtgtttca
tagggttggtacttagattaaatgacatgatatggataagttcatataaa
taatgaacttgttcttaaaactgctccaatttccctggcttctagtccat
aacagtttaaaaattatccaactagcttctcagtttggccataccacaag
gaggtccatcagagttctctagagaaacattatgggacgtctctcaaaac
atgaacagaattttgtttaagatatatggtcacccatccattcccaaagt
cattttctttgattgctttctccccaaagataattgattttactttgctt
acactacatggaaaggggctgggagatgggttctttttctcattgataga
agaaatgcccagcagataaaaagctcaaggctcccagattctgaaatatg
cccattctttccttatgggtgcacagaaaaaagccataccaatgggacaa
cagcttgatgttcttttttaagctcaggcatttgtataacatttgttctt
gttactcttctcatgcaatgctctgagaccttaaacactgcct
gaattctaatcaagcaggtctattgagtcagtgagttgagagccagtgta
atgtgtcagagtttgtggaagttcagttcaaggtcagaggcagtttttac
agggacagttttgcagagacaggtttcagagagaacaagctagacacagg
tgaaaacagaatgagtcagagactaagaggaaaccagaacattacagcag
attgtcaaatgtagaatccaaaaagaagaattcagtgagaagttgagaga
agccagattgaatcggtcagtttggagaaaagataaagccaaaactcttg
agttgaatcagccagccagagttcagaaagaggttaaaaaaggtgaactt
atacagcagtaagtctgagacaattaagccaggcaaataaaagatattta
cataagacagtacataaaagcaagatctcacatcggaaacacataagtaa
cagcatcagttgggtaatgggactttgagaccttttgtgggctgatagaa
ccagacccaaatatgaggaatatagataaattgtatcgcctctaaaattt
gacatctatttcagagacaaagctgaagttttgtattaaatttacttcca
aatgacatatgcaatcaacttgagatgttatgtgatagttcaatacatat
atatattattaataacaatattagcaataacattagacattttgtctttc
atagagtttcctaactgaagtgtaatattttcatgttataatcatttacc
tactatagtcatagttacactaaagaactacaaatgctgttgcatatgtt
ttgtgtaaaaatactttgaactgatgaggtaaagttgaagagcgcagttg
ttccctcctatggcaggagtgtgctttccacaactgaagctctcacacat
attctaaatagcagcatctaggggtctcatccatgagacatgagagttct
tacatcccaacactttataggtttgttttaatttttattaagtaagattt
ctttatttcctctgaattgcttctcagatcatgtattgttagaatattat
ttccaggacttttcactccgtggtatctttgccaatttatttgggctatt
ccactgagtcaaaatgaatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48882501_48883647
seq2: B6Ng01-084J09.b_44_1186

seq1  GAATTCAATGAGGAATGCAGTTCTCCTATTTTTACACATAATATCACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAGGAATGCAGTTCTCCTATTTTTACACATAATATCACAAC  50

seq1  AGACCTAAAGTCCATGTCTCTTATAAAACTGTAAAGTCAGAACCATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAAAGTCCATGTCTCTTATAAAACTGTAAAGTCAGAACCATCCCA  100

seq1  TACCTTCTTAAAAATTACAAAACTACATTTTCATTACAGCAGACTACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTTAAAAATTACAAAACTACATTTTCATTACAGCAGACTACCAG  150

seq1  GTATCATCAGACAGCCTGGTTGTAGGCCAGTATGTCTTCCATATTTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATCAGACAGCCTGGTTGTAGGCCAGTATGTCTTCCATATTTACAG  200

seq1  TGTTCAGAAGGATTAGAACCTAAGTCCCTCTGTGTGTTCATCATGTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAAGGATTAGAACCTAAGTCCCTCTGTGTGTTCATCATGTAGCA  250

seq1  GCATCTATCTAGCACCCCTCTTCTGTTGCCTTGTTAACACAGTTGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTATCTAGCACCCCTCTTCTGTTGCCTTGTTAACACAGTTGCTTGG  300

seq1  CAACCCATGTGCCATGAGTATTACAAAGTTCATTTTACAAATGCAATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATGTGCCATGAGTATTACAAAGTTCATTTTACAAATGCAATGGA  350

seq1  GTGTTAGATACAAAACAACAGCAGCAATCAAACAAAGAACTCTAGCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGATACAAAACAACAGCAGCAATCAAACAAAGAACTCTAGCAACA  400

seq1  AAAGCAGAGAAGAAAACAAGAAGAGGAAGAGGAAGAGGAAGAAAAAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAGAAGAAAACAAGAAGAGGAAGAGGAAGAGGAAGAAAAAACCC  450

seq1  CAGGGTCAAACTCCAGTTCTCATGGAAACTAAATATCTCTATAGAATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCAAACTCCAGTTCTCATGGAAACTAAATATCTCTATAGAATTTA  500

seq1  GAGCTACCACCTTCCAATTTTCTGAGTCATTCTAGAGCAAAACTGACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACCACCTTCCAATTTTCTGAGTCATTCTAGAGCAAAACTGACAAA  550

seq1  TACGGTCCAATTTTCCTCTTTTAAAATTGAAGATAAAGGCATGTGTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTCCAATTTTCCTCTTTTAAAATTGAAGATAAAGGCATGTGTTTCA  600

seq1  TAGGGTTGGTACTTAGATTAAATGACATGATATGGATAAGTTCATATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTGGTACTTAGATTAAATGACATGATATGGATAAGTTCATATAAA  650

seq1  TAATGAACTTGTTCTTAAAACTGCTCCAATTTCCCTGGCTTCTAGTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACTTGTTCTTAAAACTGCTCCAATTTCCCTGGCTTCTAGTCCAT  700

seq1  AACAGTTTAAAAATTATCCAACTAGCTTCTCAGTTTGGCCATACCACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTAAAAATTATCCAACTAGCTTCTCAGTTTGGCCATACCACAAG  750

seq1  GAGGTCCATCAGAGTTCTCTAGAGAAACATTATGGGACGTCTCTCAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCATCAGAGTTCTCTAGAGAAACATTATGGGACGTCTCTCAAAAC  800

seq1  ATGAACAGAATTTTGTTTAAGATATATGGTCACCCATCCATTCCCAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGAATTTTGTTTAAGATATATGGTCACCCATCCATTCCCAAAGT  850

seq1  CATTTTCTTTGATTGCTTTCTCCCCAAAGATAATTGATTTTACTTTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTGATTGCTTTCTCCCCAAAGATAATTGATTTTACTTTGCTT  900

seq1  ACACTACATGG-AAGGGGCT-GGAGATGGGTTC-TTTTCTCATTGATAGA  947
      ||||||||||| |||||||| |||||||||||| ||||||||||||||||
seq2  ACACTACATGGAAAGGGGCTGGGAGATGGGTTCTTTTTCTCATTGATAGA  950

seq1  AGAAATGCCCAGCAGATAAAAAGCTCAAAGGCTCCCAGATTCTGAAATAT  997
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAAATGCCCAGCAGATAAAAAGCTC-AAGGCTCCCAGATTCTGAAATAT  999

seq1  GCCCATTCTTTCCTTATGGGTGCACCAGAAACAGCCATACCAATGGGACA  1047
      |||||||||||||||||||||||||   ||| ||||||||||||||||||
seq2  GCCCATTCTTTCCTTATGGGTGCACAGAAAAAAGCCATACCAATGGGACA  1049

seq1  AAACCAGCTTGATG-TCTTTTTTAGGCTCAGGCATTTGTAATAACATTTG  1096
      |   |||||||||| ||||||||| |||||||||||||| ||||||||||
seq2  A---CAGCTTGATGTTCTTTTTTAAGCTCAGGCATTTGT-ATAACATTTG  1095

seq1  TTTCCTGTAACTTCCTTCTCATGCAATGCTCTGAGACACTAAACACTGCC  1146
       ||| ||| |||  |||||||||||||||||||||||  |||||||||||
seq2  -TTCTTGTTACT--CTTCTCATGCAATGCTCTGAGACCTTAAACACTGCC  1142

seq1  T  1147
      |
seq2  T  1143

seq1: chr19_49013800_49014936
seq2: B6Ng01-084J09.g_69_1190 (reverse)

seq1  AGTATTCATTTTGACTACAGTGGAATTAAGCACAAAATAAATAGCAAAGA  50
      |||||||||||||||| |||||||||  ||| ||||  || | |||||||
seq2  AGTATTCATTTTGACT-CAGTGGAAT--AGCCCAAATAAATTGGCAAAGA  47

seq1  TAACCACAGGAGTGAAAAAGTCTGGAAATTAAATATTCTAAACAATACAT  100
      | ||||| ||||||||||   ||||||||  |||||||| ||||||||| 
seq2  T-ACCAC-GGAGTGAAAAGTCCTGGAAAT--AATATTCT-AACAATACA-  91

seq1  TGATCTGAGAAGCAATATCAAGAGGAAATTAAAGAAATCTTACTTAATAA  150
      |||||||||||||||| || |||||||| |||||||||||||||||||||
seq2  TGATCTGAGAAGCAAT-TC-AGAGGAAA-TAAAGAAATCTTACTTAATAA  138

seq1  AAATTAAAACAAAACCTATAAAGTGTTGGGATGT-AGAACTCTCATGTCT  199
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  AAATTAAAAC-AAACCTATAAAGTGTTGGGATGTAAGAACTCTCATGTCT  187

seq1  CATGGATGAGACCCCTAGATGCTGCTATTTTAGAATATGGTGTGAGAGCT  249
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  CATGGATGAGACCCCTAGATGCTGCTA-TTTAGAATAT-GTGTGAGAGCT  235

seq1  TCAGTTGTGGAAAGCACACTCCTGCCATAGGAGGGAACAACTGCGCTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTGGAAAGCACACTCCTGCCATAGGAGGGAACAACTGCGCTCTT  285

seq1  CAATCTTTACCTCATCAGTTCAAAGTATTTTTTACACAAAACATATGCAA  349
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAA-CTTTACCTCATCAGTTCAAAGTA-TTTTTACACAAAACATATGCAA  333

seq1  CAGCATTTGTAGTTCTTTAGTGTAACTATGACTATAGTAGGTAAATGATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTGTAGTTCTTTAGTGTAACTATGACTATAGTAGGTAAATGATT  383

seq1  ATAACATGAAAATATTACACTTCAGTTAGGAAACTCTATGAAAGAC-AAA  448
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAACATGAAAATATTACACTTCAGTTAGGAAACTCTATGAAAGACAAAA  433

seq1  TGTCTAATGTTATTGCTAATATTGTTATTAATAATATATATATGTATTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATGTTATTGCTAATATTGTTATTAATAATATATATATGTATTGA  483

seq1  ACTATCACATAACATCTCAAGTTGATTGCATATGTCATTTGGAAGTAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCACATAACATCTCAAGTTGATTGCATATGTCATTTGGAAGTAAAT  533

seq1  TTAATACAAAACTTCAGCTTTGTCTCTGAAATAGATGTCAAATTTTAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACAAAACTTCAGCTTTGTCTCTGAAATAGATGTCAAATTTTAGAG  583

seq1  GCGATACAATTTATCTATATTCCTCATATTTGGGTCTGGTTCTATCAGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATACAATTTATCTATATTCCTCATATTTGGGTCTGGTTCTATCAGCC  633

seq1  CACAAAAGGTCTCAAAGTCCCATTACCCAACTGATGCTGTTACTTATGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGGTCTCAAAGTCCCATTACCCAACTGATGCTGTTACTTATGTG  683

seq1  TTTCCGATGTGAGATCTTGCTTTTATGTACTGTCTTATGTAAATATCTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGATGTGAGATCTTGCTTTTATGTACTGTCTTATGTAAATATCTTT  733

seq1  TATTTGCCTGGCTTAATTGTCTCAGACTTACTGCTGTATAAGTTCACCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCTGGCTTAATTGTCTCAGACTTACTGCTGTATAAGTTCACCTT  783

seq1  TTTTAACCTCTTTCTGAACTCTGGCTGGCTGATTCAACTCAAGAGTTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCTCTTTCTGAACTCTGGCTGGCTGATTCAACTCAAGAGTTTTG  833

seq1  GCTTTATCTTTTCTCCAAACTGACCGATTCAATCTGGCTTCTCTCAACTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATCTTTTCTCCAAACTGACCGATTCAATCTGGCTTCTCTCAACTT  883

seq1  CTCACTGAATTCTTCTTTTTGGATTCTACATTTGACAATCTGCTGTAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAATTCTTCTTTTTGGATTCTACATTTGACAATCTGCTGTAATG  933

seq1  TTCTGGTTTCCTCTTAGTCTCTGACTCATTCTGTTTTCACCTGTGTCTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTTCCTCTTAGTCTCTGACTCATTCTGTTTTCACCTGTGTCTAG  983

seq1  CTTGTTCTCTCTGAAACCTGTCTCTGCAAAACTGTCCCTGTAAAAACTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTCTCTGAAACCTGTCTCTGCAAAACTGTCCCTGTAAAAACTGC  1033

seq1  CTCTGACCTTGAACTGAACTTCCACAAACTCTGACACATTACACTGGCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCTTGAACTGAACTTCCACAAACTCTGACACATTACACTGGCTC  1083

seq1  TCAACTCACTGACTCAATAGACCTGCTTGATTAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCACTGACTCAATAGACCTGCTTGATTAGAATTC  1122