BAC Information

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BAC

Clone NameB6Ng01-085I24
Chromosome19 (Build37)2 (Build37)
Map Location 45,207,758 - 45,208,57383,598,548 - 83,598,850
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1
Downstream geneTlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085I24.bB6Ng01-085I24.g
ACCDH899204DH899205
length821859
definitionDH899204|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I24, 5' end.DH899205|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,207,758 - 45,208,573)(83,598,548 - 83,598,850)
sequence
gaattcagggaaagtaggctttatgcttgaggatggagcagggtctgacc
ctggccccgtagctgcaggccactcctcaatggacagacaagcactgaag
caacgaatgcccttaccccaggtttccttccgtaacactggggctcctgc
cccaaatctgcaagcatggagacacagatgcttcccggaactcttctctc
cctctcccttctttggggacagatgtggttggtgacatcttatcattttc
cctgcctgtccatcacacagaaaacctaggagcctctttatctcttgatg
aagattgtgtgtgttgctgtattttattattatggtattggcattttcat
tttcatatttatttatttatttttgggtttttcgagacagggtttctctg
tgtagccctggctgtcctggaactcactttgtagaccaggctggcctcaa
actcagaaatccacctgcctctgcctcccaagtgctgggattaaaggcgt
acaccaccacgcctggcttatttatttatttttatttcactttaattagg
atatacatagtggccagaagaagttgtcagatacccttggcactggggtt
ccatgtgttagtttatctgccacgtgctaggaattgaaccctgctcttct
ggaaaaagaagcattgttcctaactcctgagtcagcactccagctctaga
tctatttttatttttatatgcatgagcgtttttgccagcatgtttttgtt
tgtttgtttgttgtttgtttgtttgtttgtttgttttggggcagggtgag
gattgagactttgtattgccc
gaattctttgaaaaatatggctgctttttgccattgtccaaagaatctcc
ctgaggctaaggtgaagactaattgcattgacaacggaagtctcagaaat
tcccatcatagactttgttctctggttaagtctcataaagagcattttaa
acaagcatacatagcaagctaagaaaggaaagatataaaatatatggttc
aagtattaaaggagcaccaggaagtgaaatggagctgagcctgtgtccaa
ggatattaaattgaattgagggagtagtgaccttggggcaagatcctacc
cagctaagtttagatccattcatgcaaatttgagttcaagaccagcctag
aacagagcaaattctaggtaaaaaaaaaccttaaatctaggcttggtaga
ccacacctttaatcccagggcttagaagacagtcctgcagatctctgagt
tcaaagtcagtctacaaagcaagttccaggacagccaggtttaggcagtg
aaagaattggaaaacagaaagtaataatgtactagccccagcaagcagca
aaacgtgacagctttagccagatggctctagctttagaatccaaaataga
aggaactactgggacaatggatgctggttagctggagctaagaaattagt
ggtgattaagaagaaatcagtggactggagagatggcttagcagttaaga
gtactgactgttttttcagaggtcctgagttcaattcccagcaaccacat
ggtggctcacaaccatctataatgggatctgatgccctcttctggtgagt
ctgagggcagtgggtagtatgctcatatacataaaataaataaatctttt
tttaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45207758_45208573
seq2: B6Ng01-085I24.b_50_870 (reverse)

seq1  GGGCTATACAAGGTCTCAATCCTCACCCTGCCCC-AAACAAACAAACAAA  49
      |||| |||||| |||||||||||||||||||||| |||||||||||||||
seq2  GGGCAATACAAAGTCTCAATCCTCACCCTGCCCCAAAACAAACAAACAAA  50

seq1  CAAACAAACAACAAACAAACAAACAAAAACATGCTGGC-AAAACGCTCAT  98
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAACAAACAACAAACAAACAAACAAAAACATGCTGGCAAAAACGCTCAT  100

seq1  GCATATAAAA--TAAAATAGATCTAGAGCTGGAGTGCTGACTCAGGAGTT  146
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  GCATATAAAAATAAAAATAGATCTAGAGCTGGAGTGCTGACTCAGGAGTT  150

seq1  AGGAACACTGCTTCTTTTTCCAGAAGAGCAGGGTTCAATTCCTAGCACGT  196
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAATGCTTCTTTTTCCAGAAGAGCAGGGTTCAATTCCTAGCACGT  200

seq1  GGCAGAT-AACTAACACATGGAACCCCAGTGCCAAGGGTATCTGACAACT  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATAAACTAACACATGGAACCCCAGTGCCAAGGGTATCTGACAACT  250

seq1  TCTTCTGGCCACTATGTATATCCTAATTAAAGTGAAATAAAAATAAATAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGCCACTATGTATATCCTAATTAAAGTGAAATAAAAATAAATAA  300

seq1  ATAAGCCAGGCGTGGTGGTGTACGCCTTTAATCCCAGCACTTGGGAGGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCAGGCGTGGTGGTGTACGCCTTTAATCCCAGCACTTGGGAGGCA  350

seq1  GAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGT  400

seq1  TCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCCAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCCAAA  450

seq1  AATAAATAAATAAATATGAAAATGAAAATGCCAATACCATAATAATAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATATGAAAATGAAAATGCCAATACCATAATAATAAAA  500

seq1  TACAGCAACACACACAATCTTCATCAAGAGATAAAGAGGCTCCTAGGTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAACACACACAATCTTCATCAAGAGATAAAGAGGCTCCTAGGTTT  550

seq1  TCTGTGTGATGGACAGGCAGGGAAAATGATAAGATGTCACCAACCACATC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGATGGACAGGCAGGGAAAATGATAAGATGTCACCAACCACATC  600

seq1  TGTCCCCAAAGAAGGGAGAGGGAGAGAAGAGTTCCGGGAAGCATCTGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCAAAGAAGGGAGAGGGAGAGAAGAGTTCCGGGAAGCATCTGTGT  650

seq1  CTCCATGCTTGCAGATTTGGGGCAGGAGCCCCAGTGTTACGGAAGGAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGCTTGCAGATTTGGGGCAGGAGCCCCAGTGTTACGGAAGGAAAC  700

seq1  CTGGGGTAAGGGCATTCGTTGCTTCAGTGCTTGTCTGTCCATTGAGGAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTAAGGGCATTCGTTGCTTCAGTGCTTGTCTGTCCATTGAGGAGT  750

seq1  GGCCTGCAGCTACGGGGCCAGGGTCAGACCCTGCTCCATCCTCAAGCATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCAGCTACGGGGCCAGGGTCAGACCCTGCTCCATCCTCAAGCATA  800

seq1  AAGCCTACTTTCCCTGAATTC  816
      |||||||||||||||||||||
seq2  AAGCCTACTTTCCCTGAATTC  821

seq1: chr2_83598548_83598850
seq2: B6Ng01-085I24.g_743_924 (reverse)

seq1  TTTAAAAAAAGATTATTTATTTTATGTATATTAGTACACGGTAGCTGTAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGATGGTTGTGAGCCATTATGTGGTTTCTGGGGTTTGAACTCAGGACCTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTCACTCTGGCCCTGCTTGCCCCGGCCCAAAGATTTATTTATTATTAT  150
                        ||          ||||||||||||||| ||||
seq2  ------------------TT-----TAAAAAAAGATTTATTTATT-TTAT  26

seq1  ATGTCAATGCACTGTA---GCTATCTTCAGACACACCAAAAGAGGGCATC  197
       | |    |||   ||    ||  | |||||| ||||| |||||||||||
seq2  GTATATGAGCATACTACCCACTGCCCTCAGACTCACCAGAAGAGGGCATC  76

seq1  AGATCTCAATATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGA  247
      ||||| || ||| |||||||||||||||||||||||||||||||| ||||
seq2  AGATCCCATTATAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGA  126

seq1  ACTCAGGACCTTTGAAAGAACAGTCAGTGCTTTTAACTGCTGAGCCATCT  297
      ||||||||||| ||||| |||||||||| || ||||||||| ||||||||
seq2  ACTCAGGACCTCTGAAAAAACAGTCAGTACTCTTAACTGCTAAGCCATCT  176

seq1  CTCCAG  303
      ||||||
seq2  CTCCAG  182