BAC Information

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BAC

Clone NameB6Ng01-085L17
Chromosome19 (Build37)
Map Location 50,345,093 - 50,480,804
singlet/doubletdoublet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085L17.bB6Ng01-085L17.g
ACCDH899321DH899322
length1,0831,028
definitionDH899321|Mus musculus domesticus DNA, BAC clone: B6Ng01-085L17, 5' end.DH899322|Mus musculus domesticus DNA, BAC clone: B6Ng01-085L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,479,707 - 50,480,804)(50,345,093 - 50,345,796)
sequence
gaattcataagcattcctgtctcctttaaaaacagaaataaaaccttctc
tattgtcattttagttgggatgcttcttctaattgacagtcaccagggat
gtctgtgaggtgaatctaatttgcctggtgtgggctttaactgacaaatg
ttagaaattgaccttttaaacagaaatttacttggaagtcctaggtaaag
ctctgatttaagctaaatttgcctccaagacatgattaaattctcctaaa
tgttgatcaattgatcctattgttaatgggaattgaaaattcactaaatg
gtccaagatgtgaaggtcaaggttcctcttctgggtgaaggaaagcttcc
cagaatgcaatgggaaagtacctttatgttgccaaaggtggatatagttg
agactcttgcattacctgagaaccttatttgaaatgaaatcctgcccatt
gttgaatgtatttgaaatgttttgtaatgggtttgaatacttcatttgtt
atcccactagcaaccaagagcccaggttgcataccacatgttaagagtgc
cctagatatgcagctggagtcatgctccttctatgtgtactctttggtta
gcggtttagtccctgggaactctgagggtacaggttcgttcatattgttg
ttcctcctatgtggttgcaagctccttcagctgtttctgtcctttctcta
gctcctccataaagaaaatatctaaaataataataataataataataata
ataataataataaagaatgccctagaagtatttcaaatgaacagaagaat
gagagagaactggagagaaagtgaacagtgagaaagtatggagctttgac
aatgcctctagatgcagagcggtcacagaaccaggggcaacaggcaacgt
tgtggatatgtattggtgcctgagagtggctgatggctttcagcacggaa
caatttattggctcagactcagctgagtctattatgaagtttgacagact
ttgtgtcttgatatagatgcacttaataaaacacaagcttcccactgtgc
actgtgagaaggtcagtatactgtgcaagtcag
gaattctagagacaaggtcggggcagtttgtggtttttctcagaattcag
tgtggggcagggtaggagaatttttctgggaactgctaatcttgttgtgg
aagctgcaggcttagtctggtctttttgacccctatactatatagtttgg
aaagtcccttcagagggggaaagggctaggtagtcttgaatttattttgg
gttctacactgatacaataaaaatactagaagaaactacaggtgtagatt
ttaatccagcaacatggctattctggtaagggaatcacatccaaagacct
aggtttatgtgttctagctggaatgcagacatgccaacctttaatccctc
cagttgaaatacagacactcccttagtacacacctttaaggtaaaattag
tttgtagaaagaagaagcttagtttgaaagtaatttttaactgagggaca
gacaagatgatgagtagaataggcccaactttcacatgaacagtacagaa
aagatcagtgcggggagagaagatcagtcgattgggagttactgcagtga
gtgctgttcagtggagagcagttaatttcgtgagtccctgaagctcagcg
caagtcagcagaggcagatgaagctagaaaatagaaggagccagaaaatc
agaacaaatttccagagttcatttgaggccaagcagagcaattcaataag
agactgagagaagccaggttgattcagtcagcttggagaagagttggagc
cagaagagctgaggtgaaccagccagccagagttcagaacgaactagaga
ggatgagctttattcagcagtaagcctctgaggtgacaatttacatctgg
ataatgaaagatatatttacaacaggattttttgtttgtttgtttgtttg
tttgtttaccaccattagtctgagcatagatttttccaaagccaaaaaga
aatcatagtactgcaaaaaccagaaagcctctctatgttagagagataca
gctactgtaagaaatagttaaagcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_50479707_50480804
seq2: B6Ng01-085L17.b_47_1129 (reverse)

seq1  CTGACCTTGCACAGGTATACTGACCTTTCTCACAGTGGCACAGTGGGGAA  50
      |||| |||||||| ||||||||||| |||||||||| ||||||| |||||
seq2  CTGA-CTTGCACA-GTATACTGACC-TTCTCACAGT-GCACAGT-GGGAA  45

seq1  GGCCTGGTGTTTTATAAGGTGGCATCTATAATCAAGACACAAAGTCTTGT  100
      |  || ||||||||| | || |||||||| |||||||||||||||||   
seq2  G--CTTGTGTTTTATTAAGT-GCATCTAT-ATCAAGACACAAAGTCT--G  89

seq1  TCAAACTTCATAATAGACCTCAGCTGGAGTTCTGAGCCAATAAATTGTTC  150
      ||||||||||||||||| ||||||| ||| ||||||||||||||||||||
seq2  TCAAACTTCATAATAGA-CTCAGCT-GAG-TCTGAGCCAATAAATTGTTC  136

seq1  CGTGCTGAAAGCCATCAGCCACTTCTCAGGCACCAATACATATCCACAAC  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGTGCTGAAAGCCATCAGCCAC-TCTCAGGCACCAATACATATCCACAAC  185

seq1  GTTGCCTGTTGCCCCTGGTTCTGTGACCGCTCTGCATCTAGAGGCATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTGTTGCCCCTGGTTCTGTGACCGCTCTGCATCTAGAGGCATTGT  235

seq1  CAAAGCTCCATACTTTCTCACTGTTCACTTTCTCTCCAGTTCTCTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCCATACTTTCTCACTGTTCACTTTCTCTCCAGTTCTCTCTCAT  285

seq1  TCTTCTGTTCATTTGAAATACTTCTAGGGCATTCTTTATTATTATTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTTCATTTGAAATACTTCTAGGGCATTCTTTATTATTATTATTA  335

seq1  TTATTATTATTATTATTATTATTTTAGATATTTTCTTTATGGAGGAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTATTATTATTTTAGATATTTTCTTTATGGAGGAGCTA  385

seq1  GAGAAAGGACAGAAACAGCTGAAGGAGCTTGCAACCACATAGGAGGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGACAGAAACAGCTGAAGGAGCTTGCAACCACATAGGAGGAACA  435

seq1  ACAATATGAACGAACCTGTACCCTCAGAGTTCCCAGGGACTAAACCGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGAACGAACCTGTACCCTCAGAGTTCCCAGGGACTAAACCGCTA  485

seq1  ACCAAAGAGTACACATAGAAGGAGCATGACTCCAGCTGCATATCTAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGAGTACACATAGAAGGAGCATGACTCCAGCTGCATATCTAGGGC  535

seq1  ACTCTTAACATGTGGTATGCAACCTGGGCTCTTGGTTGCTAGTGGGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAACATGTGGTATGCAACCTGGGCTCTTGGTTGCTAGTGGGATAA  585

seq1  CAAATGAAGTATTCAAACCCATTACAAAACATTTCAAATACATTCAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAGTATTCAAACCCATTACAAAACATTTCAAATACATTCAACAA  635

seq1  TGGGCAGGATTTCATTTCAAATAAGGTTCTCAGGTAATGCAAGAGTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGATTTCATTTCAAATAAGGTTCTCAGGTAATGCAAGAGTCTCA  685

seq1  ACTATATCCACCTTTGGCAACATAAAGGTACTTTCCCATTGCATTCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATCCACCTTTGGCAACATAAAGGTACTTTCCCATTGCATTCTGGG  735

seq1  AAGCTTTCCTTCACCCAGAAGAGGAACCTTGACCTTCACATCTTGGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCCTTCACCCAGAAGAGGAACCTTGACCTTCACATCTTGGACCA  785

seq1  TTTAGTGAATTTTCAATTCCCATTAACAATAGGATCAATTGATCAACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAATTTTCAATTCCCATTAACAATAGGATCAATTGATCAACATT  835

seq1  TAGGAGAATTTAATCATGTCTTGGAGGCAAATTTAGCTTAAATCAGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAATTTAATCATGTCTTGGAGGCAAATTTAGCTTAAATCAGAGCT  885

seq1  TTACCTAGGACTTCCAAGTAAATTTCTGTTTAAAAGGTCAATTTCTAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAGGACTTCCAAGTAAATTTCTGTTTAAAAGGTCAATTTCTAACA  935

seq1  TTTGTCAGTTAAAGCCCACACCAGGCAAATTAGATTCACCTCACAGACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGTTAAAGCCCACACCAGGCAAATTAGATTCACCTCACAGACAT  985

seq1  CCCTGGTGACTGTCAATTAGAAGAAGCATCCCAACTAAAATGACAATAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTGACTGTCAATTAGAAGAAGCATCCCAACTAAAATGACAATAGA  1035

seq1  GAAGGTTTTATTTCTGTTTTTAAAGGAGACAGGAATGCTTATGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTTATTTCTGTTTTTAAAGGAGACAGGAATGCTTATGAATTC  1083

seq1: chr19_50345093_50345796
seq2: B6Ng01-085L17.g_70_773

seq1  GAATTCTAGAGACAAGGTCGGGGCAGTTTGTGGTTTTTCTCAGAATTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGACAAGGTCGGGGCAGTTTGTGGTTTTTCTCAGAATTCAG  50

seq1  TGTGGGGCAGGGTAGGAGAATTTTTCTGGGAACTGCTAATCTTGTTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCAGGGTAGGAGAATTTTTCTGGGAACTGCTAATCTTGTTGTGG  100

seq1  AAGCTGCAGGCTTAGTCTGGTCTTTTTGACCCCTATACTATATAGTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCAGGCTTAGTCTGGTCTTTTTGACCCCTATACTATATAGTTTGG  150

seq1  AAAGTCCCTTCAGAGGGGGAAAGGGCTAGGTAGTCTTGAATTTATTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCTTCAGAGGGGGAAAGGGCTAGGTAGTCTTGAATTTATTTTGG  200

seq1  GTTCTACACTGATACAATAAAAATACTAGAAGAAACTACAGGTGTAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACACTGATACAATAAAAATACTAGAAGAAACTACAGGTGTAGATT  250

seq1  TTAATCCAGCAACATGGCTATTCTGGTAAGGGAATCACATCCAAAGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCAGCAACATGGCTATTCTGGTAAGGGAATCACATCCAAAGACCT  300

seq1  AGGTTTATGTGTTCTAGCTGGAATGCAGACATGCCAACCTTTAATCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATGTGTTCTAGCTGGAATGCAGACATGCCAACCTTTAATCCCTC  350

seq1  CAGTTGAAATACAGACACTCCCTTAGTACACACCTTTAAGGTAAAATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAATACAGACACTCCCTTAGTACACACCTTTAAGGTAAAATTAG  400

seq1  TTTGTAGAAAGAAGAAGCTTAGTTTGAAAGTAATTTTTAACTGAGGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAAAGAAGAAGCTTAGTTTGAAAGTAATTTTTAACTGAGGGACA  450

seq1  GACAAGATGATGAGTAGAATAGGCCCAACTTTCACATGAACAGTACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGATGATGAGTAGAATAGGCCCAACTTTCACATGAACAGTACAGAA  500

seq1  AAGATCAGTGCGGGGAGAGAAGATCAGTCGATTGGGAGTTACTGCAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGTGCGGGGAGAGAAGATCAGTCGATTGGGAGTTACTGCAGTGA  550

seq1  GTGCTGTTCAGTGGAGAGCAGTTAATTTCGTGAGTCCCTGAAGCTCAGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTCAGTGGAGAGCAGTTAATTTCGTGAGTCCCTGAAGCTCAGCG  600

seq1  CAAGTCAGCAGAGGCAGATGAAGCTAGAAAATAGAAGGAGCCAGAAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGCAGAGGCAGATGAAGCTAGAAAATAGAAGGAGCCAGAAAATC  650

seq1  AGAACAAATTTCCAGAGTTCATTTGAGGCCAAGCAGAGCAATTCAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATTTCCAGAGTTCATTTGAGGCCAAGCAGAGCAATTCAATAAG  700

seq1  AGAC  704
      ||||
seq2  AGAC  704