BAC Information

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BAC

Clone NameB6Ng01-085O01
Chromosome19 (Build37)
Map Location 36,528,472 - 36,676,919
singlet/doubletdoublet
Overlap genePcgf5, Hectd2
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, LOC668201
Downstream geneLOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085O01.bB6Ng01-085O01.g
ACCDH899428DH899429
length1,0881,077
definitionDH899428|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O01, 5' end.DH899429|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,528,472 - 36,529,557)(36,675,822 - 36,676,919)
sequence
gaattctcagaaataaaaaccactatatgctgaaaaggcatttgataaaa
tccagtgttggtactaactttcctactagcttcctttttaaaacttttta
aaaattggatattttatttatttacatttcaaatgttagcccctttcccc
cggtttcccctccagaaacccccatcccatcctccctccccctatcccac
tcacccactcctgcctccctacccagcattcccctacactggggcataga
gccttcacaggaccaagggcctctcctcccactgatgcccagcaaggcca
ccctctgctgcatatgcagctggagccatgggtccctccatgtgtactct
ttgcttcctctttgatttagtctttgggagctctggtgggagggagaagg
ggcatatacagctatggccccaaaaatctggctgggcttcagaaatagag
aattttgtgcctaaccaaccaaggtctaagctggttcctgaagaccagag
taaaatgttagatgaagaataaaagtaaaaaaattaaaaagcagaataag
gttaagacgattggaaccttgcagtctagacttctgtgcttgcctattag
gtcctaaatggcatcttctttattgttcagctgagaacaaagcctagggt
atccttctccactctcctgtccggtgctagctggaatttagtacatagta
gcatcaatcttctcagtgtgtgacatgcatgtgaatgctgagagtgcatc
tcaggactggagaatccagtctgacttcctttgtaatgaaagaatctgtt
gttgtctgtattgaaaggtttcatgcccatcgaccccgaccccgagagag
tggaccatgggtcaatcacagctgtcacagcgttttctcgactcttgata
gtttcgtcactggatttcacttagaaagtggaatctgcagattgtagaca
ggaaatcactgattgtccagacttgctgtctgactcttgggttcttaagg
tagtgaaaggtgaagtaaagctgaagtaggagcgtgatgcttgcctccat
ctgcaaggggctctttcctccctagacctggtgtgcta
gaattctttttggagccataggcaataaaatttcttctaatattcccata
ttgaatgcaagatgatttggggaacatttcaggcacccaaacctttgtct
ttttctttaacaggaaaaaaatatactcaggaactgaactgctgagaaat
aaagtattcttatttttatagtttgaaatatcatcatttatattgtgttg
tactcttgaacaagacatgggaataatttctgtctactctgtttttcttt
ctcttttaagaagctaagcagctctctcatctttaacaccggaatactct
cctaagcagtaggcaccggatatgcgcaagcgtgtagaggaaccgtgtga
gcgctcactcctgtgctatgctgttctcaacactggtaggcagagcagag
gcccagggagaaactccaccttgcgctacattttcctagtctactactgt
ctgtgcattttccatgtactgagaaacaattataaaaactttccctttcc
ttgagcatatttcttagttctatagacatatattagtgtcaatcacctaa
cgtcttggttatttttgattttcatgaactccagaaagtgctctagtgtg
aatgatctgtgttaacacactcctgctctcatcatggttacacaatgaag
tcccaacaagctcctcaaatttgggtttatcagaaacatttctgttgcat
ttataatatactgggaggctaactagatgaggagtgttctatcttccata
ctgtgaacagggttaccttgtgggggtaataacatgaatgatatttttaa
cacttcctgattacactaaaacaattcacaagacatttaacttatttatt
atttactatattgattacagtcagcttaaacatgtttcgtagctggctta
cccttgcgatgcttatcatctgtgttctgagtctctttgaatatgatttt
tttgcagctatagaaatacgaatggtactgacgaaggaaactgctttata
agcaacagaaaagcaaatgtgcatttttagcaagtaacctaggattctag
taccctcctgcaatataaacttacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_36528472_36529557
seq2: B6Ng01-085O01.b_46_1133

seq1  GAATTCTCAGAAATAAAAACCACTATATGCTGAAAAGGCATTTGATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAATAAAAACCACTATATGCTGAAAAGGCATTTGATAAAA  50

seq1  TCCAGTGTTGGTACTAACTTTCCTACTAGCTTCCTTTTTAAAACTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTTGGTACTAACTTTCCTACTAGCTTCCTTTTTAAAACTTTTTA  100

seq1  AAAATTGGATATTTTATTTATTTACATTTCAAATGTTAGCCCCTTTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGATATTTTATTTATTTACATTTCAAATGTTAGCCCCTTTCCCC  150

seq1  CGGTTTCCCCTCCAGAAACCCCCATCCCATCCTCCCTCCCCCTATCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTCCCCTCCAGAAACCCCCATCCCATCCTCCCTCCCCCTATCCCAC  200

seq1  TCACCCACTCCTGCCTCCCTACCCAGCATTCCCCTACACTGGGGCATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACTCCTGCCTCCCTACCCAGCATTCCCCTACACTGGGGCATAGA  250

seq1  GCCTTCACAGGACCAAGGGCCTCTCCTCCCACTGATGCCCAGCAAGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCACAGGACCAAGGGCCTCTCCTCCCACTGATGCCCAGCAAGGCCA  300

seq1  CCCTCTGCTGCATATGCAGCTGGAGCCATGGGTCCCTCCATGTGTACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCTGCATATGCAGCTGGAGCCATGGGTCCCTCCATGTGTACTCT  350

seq1  TTGCTTCCTCTTTGATTTAGTCTTTGGGAGCTCTGGTGGGAGGGAGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCTCTTTGATTTAGTCTTTGGGAGCTCTGGTGGGAGGGAGAAGG  400

seq1  GGCATATACAGCTATGGCCCCAAAAATCTGGCTGGGCTTCAGAAATAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATACAGCTATGGCCCCAAAAATCTGGCTGGGCTTCAGAAATAGAG  450

seq1  AATTTTGTGCCTAACCAACCAAGGTCTAAGCTGGTTCCTGAAGACCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTGCCTAACCAACCAAGGTCTAAGCTGGTTCCTGAAGACCAGAG  500

seq1  TAAAATGTTAGATGAAGAATAAAAGTAAAAAAATTAAAAAGCAGAATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTAGATGAAGAATAAAAGTAAAAAAATTAAAAAGCAGAATAAG  550

seq1  GTTAAGACGATTGGAACCTTGCAGTCTAGACTTCTGTGCTTGCCTATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGACGATTGGAACCTTGCAGTCTAGACTTCTGTGCTTGCCTATTAG  600

seq1  GTCCTAAATGGCATCTTCTTTATTGTTCAGCTGAGAACAAAGCCTAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAATGGCATCTTCTTTATTGTTCAGCTGAGAACAAAGCCTAGGGT  650

seq1  ATCCTTCTCCACTCTCCTGTCCGGTGCTAGCTGGAATTTAGTACATAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTCCACTCTCCTGTCCGGTGCTAGCTGGAATTTAGTACATAGTA  700

seq1  GCATCAATCTTCTCAGTGTGTGACATGCATGTGAATGCTGAGAGTGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAATCTTCTCAGTGTGTGACATGCATGTGAATGCTGAGAGTGCATC  750

seq1  TCAGGACTGGAGAATCCAGTCTGACTTCCTTTGTAATGAAAGAATCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTGGAGAATCCAGTCTGACTTCCTTTGTAATGAAAGAATCTGTT  800

seq1  GTTGTCTGTATTG-AAGGTTTCATGCCCATCGACCCCGACCCCGAGAGAG  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTGTATTGAAAGGTTTCATGCCCATCGACCCCGACCCCGAGAGAG  850

seq1  TGGACCATGGGTCAATCACAGCTGTCACAGCGTTTTCTCGACTCTTGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCATGGGTCAATCACAGCTGTCACAGCGTTTTCTCGACTCTTGATA  900

seq1  GTTTCGTCACTGGATTTCACTTAGAAAGTGGGAATCTGCAGATTGTAGAA  949
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  GTTTCGTCACTGGATTTCACTTAGAAAGT-GGAATCTGCAGATTGTAG-A  948

seq1  CAGGAAAATCACTGATTGTCCAGAC-TGCTGTCTGACTCTTTGGTTC-TC  997
      |||| |||||||||||||||||||| ||||||||||||||| ||||| | 
seq2  CAGG-AAATCACTGATTGTCCAGACTTGCTGTCTGACTCTTGGGTTCTTA  997

seq1  AGGTAGTG-AAGGTGAAGGTAAAGCTG-AGTAGGAGCGTGATGCCTGCCT  1045
      |||||||| |||||||| ||||||||| |||||||||||||||| |||||
seq2  AGGTAGTGAAAGGTGAA-GTAAAGCTGAAGTAGGAGCGTGATGCTTGCCT  1046

seq1  CCATCTGCAAGGGGCTCCTTCCTCCCTAGAACT-GTGTGCTA  1086
      ||||||||||||||||| |||||||||||| || ||||||||
seq2  CCATCTGCAAGGGGCTCTTTCCTCCCTAGACCTGGTGTGCTA  1088

seq1: chr19_36675822_36676919
seq2: B6Ng01-085O01.g_69_1145 (reverse)

seq1  AAAGTAATGTTTTATATTGCAAGGAGGGTACCTTAGAATCCCTTAGTGTA  50
      |||||||   |||||||||| ||||||||||  ||||||||  |||  ||
seq2  AAAGTAA--GTTTATATTGC-AGGAGGGTAC--TAGAATCC--TAGGTTA  43

seq1  CTTTTGCTAAAAATGCACCATTTTGCTTTTTCTGTTTGCTTATAAAGCAG  100
      |  |||||||||||||||   ||||| ||||||| |||||||||||||||
seq2  C--TTGCTAAAAATGCAC--ATTTGC-TTTTCTG-TTGCTTATAAAGCAG  87

seq1  GTTTTCCTTCTGTCAGTACCCATTCGTTATTTCTATAGCTGCAAAAAAAA  150
        |||||||| ||||||| ||||||| ||||||||||||||| |||||||
seq2  --TTTCCTTC-GTCAGTA-CCATTCG-TATTTCTATAGCTGC-AAAAAAA  131

seq1  TCATTATTCAAAGAGACTCAGAACAACAGATGATAAGCATCGCAAGGGTA  200
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCA-TATTCAAAGAGACTCAGAAC-ACAGATGATAAGCATCGCAAGGGTA  179

seq1  AGCCAGCTACGAAACATGTTTATGCTGACTGTAATCAATATAGTAAATAA  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCCAGCTACGAAACATGTTTAAGCTGACTGTAATCAATATAGTAAATAA  229

seq1  TAAATAAGTTAAATGTCTTGTGAATTGTTTTAGTGTAATCAGGAAGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTTAAATGTCTTGTGAATTGTTTTAGTGTAATCAGGAAGTGTT  279

seq1  AAAAATATCATTCATGTTATTACCCCCACAAGGTAACCCTGTTCACAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCATTCATGTTATTACCCCCACAAGGTAACCCTGTTCACAGTA  329

seq1  TGGAAGATAGAACACTCCTCATCTAGTTAGCCTCCCAGTATATTATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATAGAACACTCCTCATCTAGTTAGCCTCCCAGTATATTATAAAT  379

seq1  GCAACAGAAATGTTTCTGATAAACCCAAATTTGAGGAGCTTGTTGGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAAATGTTTCTGATAAACCCAAATTTGAGGAGCTTGTTGGGACT  429

seq1  TCATTGTGTAACCATGATGAGAGCAGGAGTGTGTTAACACAGATCATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGTAACCATGATGAGAGCAGGAGTGTGTTAACACAGATCATTCA  479

seq1  CACTAGAGCACTTTCTGGAGTTCATGAAAATCAAAAATAACCAAGACGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAGCACTTTCTGGAGTTCATGAAAATCAAAAATAACCAAGACGTT  529

seq1  AGGTGATTGACACTAATATATGTCTATAGAACTAAGAAATATGCTCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATTGACACTAATATATGTCTATAGAACTAAGAAATATGCTCAAGG  579

seq1  AAAGGGAAAGTTTTTATAATTGTTTCTCAGTACATGGAAAATGCACAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAAGTTTTTATAATTGTTTCTCAGTACATGGAAAATGCACAGAC  629

seq1  AGTAGTAGACTAGGAAAATGTAGCGCAAGGTGGAGTTTCTCCCTGGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGACTAGGAAAATGTAGCGCAAGGTGGAGTTTCTCCCTGGGCCT  679

seq1  CTGCTCTGCCTACCAGTGTTGAGAACAGCATAGCACAGGAGTGAGCGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGCCTACCAGTGTTGAGAACAGCATAGCACAGGAGTGAGCGCTC  729

seq1  ACACGGTTCCTCTACACGCTTGCGCATATCCGGTGCCTACTGCTTAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGTTCCTCTACACGCTTGCGCATATCCGGTGCCTACTGCTTAGGAG  779

seq1  AGTATTCCGGTGTTAAAGATGAGAGAGCTGCTTAGCTTCTTAAAAGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCCGGTGTTAAAGATGAGAGAGCTGCTTAGCTTCTTAAAAGAGAA  829

seq1  AGAAAAACAGAGTAGACAGAAATTATTCCCATGTCTTGTTCAAGAGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACAGAGTAGACAGAAATTATTCCCATGTCTTGTTCAAGAGTACA  879

seq1  ACACAATATAAATGATGATATTTCAAACTATAAAAATAAGAATACTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATATAAATGATGATATTTCAAACTATAAAAATAAGAATACTTTAT  929

seq1  TTCTCAGCAGTTCAGTTCCTGAGTATATTTTTTTCCTGTTAAAGAAAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGCAGTTCAGTTCCTGAGTATATTTTTTTCCTGTTAAAGAAAAAG  979

seq1  ACAAAGGTTTGGGTGCCTGAAATGTTCCCCAAATCATCTTGCATTCAATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTTTGGGTGCCTGAAATGTTCCCCAAATCATCTTGCATTCAATA  1029

seq1  TGGGAATATTAGAAGAAATTTTATTGCCTATGGCTCCAAAAAGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATATTAGAAGAAATTTTATTGCCTATGGCTCCAAAAAGAATTC  1077