BAC Information

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BAC

Clone NameB6Ng01-086C08
Chromosome19 (Build37)
Map Location 27,085,051 - 27,086,229
singlet/doubletsinglet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815
Downstream geneLOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086C08.bB6Ng01-086C08.g
ACCDH899625DH899626
length1,165465
definitionDH899625|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C08, 5' end.DH899626|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttggaggactgtgatagagaagcggtctctggagagcattttct
ctttctctgccgtgaacttgtgagtgtgaccggtttttgattctttgatt
ttaaaagcataggatagtcttttatatttcttcataatttaatctgtgct
gcaaaacacactggggtgtattacctcttggctgatgtgaaagcaaagtc
attgggggaatggtctgcctttagaaaagattatctagccgtgggatagt
ggaccctgcaaaggaaacttggtaaggttgagcagattcagagtccccag
cacccagacacccacttgaaatgctaggctgctccctgctcccttccagg
ttcctggctcagaacatgtgccacactccccacacagaaaatgtgacccg
tggatcagagcagagttctccatgctaatgaggtatctagaagaaccccg
agggttcagacaataagcttctcctctcagatcttcctccttgcaaaagg
tatttaatctctagtccaccctgaggaggtggtatgcacccatttcccac
aatgaacaatcactaagccgtttggaaccaaggactgtatctttcgtcaa
aaaagccatagtaaggagcatgaagaaggctttcacctacagagccacgc
tgcctaagccctccctgtgctcccagataaccgctggtaagctagggaca
ttcgctggagttcccccatcccagccctgggtgcaggcctcctcctttct
ccgctcttccgagacttccagcagtgtctggatgcctaagaagctgagaa
cacccagccccagtctcgtcctcagcccatgggcccactcaattcccaac
tccccatgacccagtgtcatctggatgtccaggactttgggacgccccca
tgcctgggagcttaggaaccccagctttggcctcccacattttacactgt
gtttctcgccccctgagcagtgtattggagctttgctcaagcccagcacc
cactgcacaggttaatgcagtctagtctctctgcgttctgcctgccagca
gccattcccacaaacacaaaccacatctagtagttctacatggagagagt
aacttttatccctgtacataaataagatctataatgcctagactatctat
ctgcttagaggagac

cagggcagccagtactacatggagatggcctgtctcaaaaataaatagac
aaataaataattgtctcttgattctacatatatagagttcttcctaataa
aatcagtgagtgatgaagtgtgtctatttttgaaaagatgctttttttgt
tttgtatttttaatgatgtacattgtgtgtgtatgttgggagagggtagg
tatgtgcatgtgagctcactgcatgtagaggtcagaagagggtatagaat
cccccccccccaagagctggagttacaggcagttttaagcaatcctatga
agggctgggaactgaacttgggtccttatagaatcagtacatgcttttaa
ctgctgaggtatttctccaggccctaagtaaagggcttttttggcatgaa
gttcttgttgttgtttacattgttgttgttgttgttgttggcagtggtag
tggtggtggtggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27085051_27086229
seq2: B6Ng01-086C08.b_47_1211

seq1  GAATTCTTGGAGGACTGTGATAGAGAAGCGGTCTCTGGAGAGCATTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGGACTGTGATAGAGAAGCGGTCTCTGGAGAGCATTTTCT  50

seq1  CTTTCTCTGCCGTGAACTTGTGAGTGTGACCGGTTTTTGATTCTTTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGCCGTGAACTTGTGAGTGTGACCGGTTTTTGATTCTTTGATT  100

seq1  TTAAAAGCATAGGATAGTCTTTTATATTTCTTCATAATTTAATCTGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCATAGGATAGTCTTTTATATTTCTTCATAATTTAATCTGTGCT  150

seq1  GCAAAACACACTGGGGTGTATTACCTCTTGGCTGATGTGAAAGCAAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACACACTGGGGTGTATTACCTCTTGGCTGATGTGAAAGCAAAGTC  200

seq1  ATTGGGGGAATGGTCTGCCTTTAGAAAAGATTATCTAGCCGTGGGATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGGAATGGTCTGCCTTTAGAAAAGATTATCTAGCCGTGGGATAGT  250

seq1  GGACCCTGCAAAGGAAACTTGGTAAGGTTGAGCAGATTCAGAGTCCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTGCAAAGGAAACTTGGTAAGGTTGAGCAGATTCAGAGTCCCCAG  300

seq1  CACCCAGACACCCACTTGAAATGCTAGGCTGCTCCCTGCTCCCTTCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGACACCCACTTGAAATGCTAGGCTGCTCCCTGCTCCCTTCCAGG  350

seq1  TTCCTGGCTCAGAACATGTGCCACACTCCCCACACAGAAAATGTGACCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCTCAGAACATGTGCCACACTCCCCACACAGAAAATGTGACCCG  400

seq1  TGGATCAGAGCAGAGTTCTCCATGCTAATGAGGTATCTAGAAGAACCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAGAGCAGAGTTCTCCATGCTAATGAGGTATCTAGAAGAACCCCG  450

seq1  AGGGTTCAGACAATAAGCTTCTCCTCTCAGATCTTCCTCCTTGCAAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCAGACAATAAGCTTCTCCTCTCAGATCTTCCTCCTTGCAAAAGG  500

seq1  TATTTAATCTCTAGTCCACCCTGAGGAGGTGGTATGCACCCATTTCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATCTCTAGTCCACCCTGAGGAGGTGGTATGCACCCATTTCCCAC  550

seq1  AATGAACAATCACTAAGCCGTTTGGAACCAAGGACTGTATCTTTCGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAATCACTAAGCCGTTTGGAACCAAGGACTGTATCTTTCGTCAA  600

seq1  AAAAGCCATAGTAAGGAGCATGAAGAAGGCTTTCACCTACAGAGCCACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATAGTAAGGAGCATGAAGAAGGCTTTCACCTACAGAGCCACGC  650

seq1  TGCCTAAGCCCTCCCTGTGCTCCCAGATAACCGCTGGTAAGCTAGGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAGCCCTCCCTGTGCTCCCAGATAACCGCTGGTAAGCTAGGGACA  700

seq1  TTCGCTGGAGTTCCCCCATCCCAGCCCTGGGTGCAGGCCTCCTCCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTGGAGTTCCCCCATCCCAGCCCTGGGTGCAGGCCTCCTCCTTTCT  750

seq1  CCGCTCTTCCGAGACTTCCAGCAGTGTCTGGATGCCTAAGAAGCTGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCTTCCGAGACTTCCAGCAGTGTCTGGATGCCTAAGAAGCTGAGAA  800

seq1  CACCCAGCCCCAGTCTCGTCCTCAGCCCATGGGCCCACTCAATTCCCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCCCCAGTCTCGTCCTCAGCCCATGGGCCCACTCAATTCCCAAC  850

seq1  TCCCCATGACCCAGTGTCATCTGGATGTCCAGGACTTTGGGACGCCCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGACCCAGTGTCATCTGGATGTCCAGGACTTTGGGACGCCCCCA  900

seq1  TGCCTGGGAGCTTAGGAACCCCAGCTTTGGCCTCCCACATTTTACACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGAGCTTAGGAACCCCAGCTTTGGCCTCCCACATTTTACACTGT  950

seq1  GTTTTCTCGCCCCCTGAGCAGTGTATTGGAGCTTTGCTCAAGCCCAGCAC  1000
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTTCTCGCCCCCTGAGCAGTGTATTGGAGCTTTGCTCAAGCCCAGCAC  999

seq1  CCAACTGCACAGGGTAAATGCAGTCTAGTCTCTCTGCGTTCTGCCTGCCA  1050
      || |||||||| ||| ||||||||||||||||||||||||||||||||| 
seq2  CC-ACTGCACA-GGTTAATGCAGTCTAGTCTCTCTGCGTTCTGCCTGCC-  1046

seq1  AGCAGCCATTCCCACAAACACAAAACCACATCTAGTAGGTTCCTACATTG  1100
      ||||||||||||||||||||| ||||||||||||||||  | ||||| ||
seq2  AGCAGCCATTCCCACAAACAC-AAACCACATCTAGTAG--TTCTACA-TG  1092

seq1  GAGAGAGTTAACTTTTATCCCTGTACATTAAATATAAGATTCTATAAATG  1150
      ||||||| ||||||||||||||||||||   | |||||| ||||| ||||
seq2  GAGAGAG-TAACTTTTATCCCTGTACAT---AAATAAGA-TCTAT-AATG  1136

seq1  CTTAGACTATCTATCTGCTTTAGA-GAGAC  1179
      | |||||||||||||||| ||||| |||||
seq2  CCTAGACTATCTATCTGC-TTAGAGGAGAC  1165


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