BAC Information

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BAC

Clone NameB6Ng01-086D04
Chromosome19 (Build37)
Map Location 18,535,100 - 18,596,943
singlet/doubletdoublet
Overlap genenone
Upstream genePcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086D04.bB6Ng01-086D04.g
ACCDH899661DH899662
length5761,210
definitionDH899661|Mus musculus domesticus DNA, BAC clone: B6Ng01-086D04, 5' end.DH899662|Mus musculus domesticus DNA, BAC clone: B6Ng01-086D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,596,368 - 18,596,943)(18,535,100 - 18,536,333)
sequence
gaattctgtctctgtcctttgttatttatttccaggcaccaattaacatt
gctttgcctctgttttctcatctgtaagatattggacatggaaataatag
tcttgaccccaaattttaaatttaacgtgtcacaatacaaaaatgacttc
aaagacagctgggaatatagaatgtgcttggctcattattaattgctact
gttattgctagttctgttttgggactattctgaggtccacaggggcctga
atttcaaagaactgggcaaagaccattcattcatttggaaatctgtcttc
cataataatatatagcctgtgtgtagggagaaagagctgagtttgaatgg
gaagtgttgatatggggatggggaaatagttcagtgcctttgcttaggat
gattgggccctaggttcaattaaaagcatcagaaatagataaacagaagt
taaaagtcctggctttatggttcaggtgggaattgcagcttcctggtctg
aggtttggggagagcccttcctctgtgtcaccgttcccacagtcatttgc
tgtacattcttctcaagcatcctata
gaattcagcccacagagcatccttgctggaaaatgtgcacaggaaaagtg
cttccctggagtcagcaactgaggccctgaaaggcacagcagctatggta
gggatccaggctacaagtcacactggctacatctcctgtgcccatacagt
gctggcttcacaggcaggcaagatgaagaactgaggaggtcatgcaggct
tgcattgagctcccaaagtcactcaagtgaagcggggcagggcagggttg
aatgtccatggaagggaaccatgagagctatttgtttcttcttcactacc
tttcaggagattaaattttttaaaaaggccgggcgtggtggtgcacgcct
ttaatcccagcactaggaggcagaggcaggcagatttctgagtttgaggc
cagcctggtctacaaagtgagttccaggacagacaggactatacagagaa
actgtgtctcaaaaaaaaaaaaaaaaattcaaaaggcaaccaaggctgca
gacattgctagactcaaatgcattgggagaatattactattccaagatca
cttgcatagttgttggagacccccaggtaaaagctggttcctgcagtttc
tctttccttgctataggattatttcattaagattgttcaaaacatgtcag
cttgcctcacctagagtagtgataagagaatagccaggtatgcgagggtg
gaaggcagaaaggtcaggtagaaagacagtctttaatagcctaaccttag
agagaaagcactatcacttctttccttgctgctagataggcacaaaaaaa
ctaaatcaaaacataaatcaaaacatactcaaaggtaggtatgtacaaaa
cacaagtatcaggatacaggaattatctgaagccatcatagagcctggca
taaacttaaaaccacttagcatataacttaatatttatttgtataaaatt
tatatattttattaatcaatgttatataaatgtatatgtataaaatatat
attatattataaatatatatatacatcttttcctttttattatttagtta
gctcataaatgagtttcactataaacattttcatacatgtatatttattt
ttcccttgcccctcattatcctttcccatttctcctgtgttttttcaaaa
tactccccagtttcatccaagtgcgagataacaaaataatgggccatttc
ctttgggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18596368_18596943
seq2: B6Ng01-086D04.b_47_622 (reverse)

seq1  TATAGGATGCTTGAGAAGAATGTACAGCAAATGACTGTGGGAACGGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATGCTTGAGAAGAATGTACAGCAAATGACTGTGGGAACGGTGAC  50

seq1  ACAGAGGAAGGGCTCTCCCCAAACCTCAGACCAGGAAGCTGCAATTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAAGGGCTCTCCCCAAACCTCAGACCAGGAAGCTGCAATTCCCA  100

seq1  CCTGAACCATAAAGCCAGGACTTTTAACTTCTGTTTATCTATTTCTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACCATAAAGCCAGGACTTTTAACTTCTGTTTATCTATTTCTGATG  150

seq1  CTTTTAATTGAACCTAGGGCCCAATCATCCTAAGCAAAGGCACTGAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTGAACCTAGGGCCCAATCATCCTAAGCAAAGGCACTGAACTA  200

seq1  TTTCCCCATCCCCATATCAACACTTCCCATTCAAACTCAGCTCTTTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCATCCCCATATCAACACTTCCCATTCAAACTCAGCTCTTTCTCC  250

seq1  CTACACACAGGCTATATATTATTATGGAAGACAGATTTCCAAATGAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACAGGCTATATATTATTATGGAAGACAGATTTCCAAATGAATGA  300

seq1  ATGGTCTTTGCCCAGTTCTTTGAAATTCAGGCCCCTGTGGACCTCAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTTTGCCCAGTTCTTTGAAATTCAGGCCCCTGTGGACCTCAGAAT  350

seq1  AGTCCCAAAACAGAACTAGCAATAACAGTAGCAATTAATAATGAGCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAAAACAGAACTAGCAATAACAGTAGCAATTAATAATGAGCCAAG  400

seq1  CACATTCTATATTCCCAGCTGTCTTTGAAGTCATTTTTGTATTGTGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTATATTCCCAGCTGTCTTTGAAGTCATTTTTGTATTGTGACAC  450

seq1  GTTAAATTTAAAATTTGGGGTCAAGACTATTATTTCCATGTCCAATATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTTAAAATTTGGGGTCAAGACTATTATTTCCATGTCCAATATCT  500

seq1  TACAGATGAGAAAACAGAGGCAAAGCAATGTTAATTGGTGCCTGGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGAGAAAACAGAGGCAAAGCAATGTTAATTGGTGCCTGGAAATA  550

seq1  AATAACAAAGGACAGAGACAGAATTC  576
      ||||||||||||||||||||||||||
seq2  AATAACAAAGGACAGAGACAGAATTC  576

seq1: chr19_18535100_18536333
seq2: B6Ng01-086D04.g_68_1277

seq1  GAATTCAGCCCACAGAGCATCCTTGCTGGAAAATGTGCACAGGAAAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCACAGAGCATCCTTGCTGGAAAATGTGCACAGGAAAAGTG  50

seq1  CTTCCCTGGAGTCAGCAACTGAGGCCCTGAAAGGCACAGCAGCTATGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGGAGTCAGCAACTGAGGCCCTGAAAGGCACAGCAGCTATGGTA  100

seq1  GGGATCCAGGCTACAAGTCACACTGGCTACATCTCCTGTGCCCATACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCAGGCTACAAGTCACACTGGCTACATCTCCTGTGCCCATACAGT  150

seq1  GCTGGCTTCACAGGCAGGCAAGATGAAGAACTGAGGAGGTCATGCAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTCACAGGCAGGCAAGATGAAGAACTGAGGAGGTCATGCAGGCT  200

seq1  TGCATTGAGCTCCCAAAGTCACTCAAGTGAAGCGGGGCAGGGCAGGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGAGCTCCCAAAGTCACTCAAGTGAAGCGGGGCAGGGCAGGGTTG  250

seq1  AATGTCCATGGAAGGGAACCATGAGAGCTATTTGTTTCTTCTTCACTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCATGGAAGGGAACCATGAGAGCTATTTGTTTCTTCTTCACTACC  300

seq1  TTTCAGGAGATTAAATTTTTTAAAAAGGCCGGGCGTGGTGGTGCACGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAGATTAAATTTTTTAAAAAGGCCGGGCGTGGTGGTGCACGCCT  350

seq1  TTAATCCCAGCACTAGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTAGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGC  400

seq1  CAGCCTGGTCTACAAAGTGAGTTCCAGGACAGACAGGACTATACAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAAAGTGAGTTCCAGGACAGACAGGACTATACAGAGAA  450

seq1  ACTGTGTCTCAAAAAAAAAAAAAAAAATTCAAAAGGCAACCAAGGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCTCAAAAAAAAAAAAAAAAATTCAAAAGGCAACCAAGGCTGCA  500

seq1  GACATTGCTAGACTCAAATGCATTGGGAGAATATTACTATTCCAAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGCTAGACTCAAATGCATTGGGAGAATATTACTATTCCAAGATCA  550

seq1  CTTGCATAGTTGTTGGAGACCCCCAGGTAAAAGCTGGTTCCTGCAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATAGTTGTTGGAGACCCCCAGGTAAAAGCTGGTTCCTGCAGTTTC  600

seq1  TCTTTCCTTGCTATAGGATTATTTCATTAAGATTGTTCAAAACATGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTGCTATAGGATTATTTCATTAAGATTGTTCAAAACATGTCAG  650

seq1  CTTGCCTCACCTAGAGTAGTGATAAGAGAATAGCCAGGTATGCGAGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCACCTAGAGTAGTGATAAGAGAATAGCCAGGTATGCGAGGGTG  700

seq1  GAAGGCAGAAAGGTCAGGTAGAAAGACAGTCTTTAATAGCCTAACCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGAAAGGTCAGGTAGAAAGACAGTCTTTAATAGCCTAACCTTAG  750

seq1  AGAGAAAGCACTATCACTTCTTTCCTTGCTGCTAGATAGGCACAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCACTATCACTTCTTTCCTTGCTGCTAGATAGGCACAAAAAAA  800

seq1  CTAAATCAAAACATAAATCAAAACATACTCAAAGGTAGGTATGTACAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAAAACATAAATCAAAACATACTCAAAGGTAGGTATGTACAAAA  850

seq1  CACAAGTATCAGGATACAGGAATTATCTGAAGCCATCATAGAGCCTGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTATCAGGATACAGGAATTATCTGAAGCCATCATAGAGCCTGGCA  900

seq1  TAAACTTAAAACCACTTAGGCATATAACTTATATTTTATTTGTTATAAAT  950
      |||||||||||||||||| ||||||||||||   |||||||||   ||||
seq2  TAAACTTAAAACCACTTA-GCATATAACTTAATATTTATTTGTATAAAAT  949

seq1  TTATATTATTTTATTAATCAATGTTATATAAATGTATATTGTATAAAATA  1000
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  TTATA-TATTTTATTAATCAATGTTATATAAATGTATA-TGTATAAAATA  997

seq1  TATATTATAATTATTAAATATATAATATACAATCTTTTTCCTTTTTATTA  1050
      |||||||| |||| ||||||||| |||||| ||| |||||||||||||||
seq2  TATATTAT-ATTA-TAAATATAT-ATATAC-ATC-TTTTCCTTTTTATTA  1042

seq1  TTTTAGTTAGCTCATAAAATGAGTTTCACTAT-AACATTTTCATACATGT  1099
       |||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  -TTTAGTTAGCTCAT-AAATGAGTTTCACTATAAACATTTTCATACATGT  1090

seq1  ATATTTTATTTTTTCTCTTTGCCCCTTCATTATCCTTTCCCATTTTTCCT  1149
      ||| |||||||||   | ||||||| ||||||||||||||||||| ||| 
seq2  ATA-TTTATTTTT--CCCTTGCCCC-TCATTATCCTTTCCCATTTCTCC-  1135

seq1  TCTTGTTGTTTTTTTCCAAATAACTCCTCTCATGTTTTCATGTCATATGT  1199
            ||| ||||| ||||  ||||| |      ||||||     | ||
seq2  ------TGTGTTTTTTCAAAATACTCCCC----AGTTTCAT---CCAAGT  1172

seq1  GC-AGATGACAAA--TATATGCCCATTCCTTTGGGCCA  1234
      || |||| |||||   ||  |||  |||||||||||||
seq2  GCGAGATAACAAAATAATGGGCCATTTCCTTTGGGCCA  1210