BAC Information

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BAC

Clone NameB6Ng01-086G20
Chromosome19 (Build37)
Map Location 42,150,131 - 42,151,264
singlet/doubletsinglet
Overlap geneBC023055
Upstream geneTmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik
Downstream genePi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086G20.g
ACCDH899831
length1,090
definitionDH899831|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctttcctggaactaagacctcacattacatagcctcataccctt
ctctgctactgaggagtggtccaggtggcactagaagagttctgagatga
gcttccctctgtaccctgactaacagacacattgacagctgctggcctcc
gttgccccgcacagctaacctatgcactaaaggctaacttacatcttggt
gtctctgcaagtatgagggggagttttcccagggcaaggtctctggggtc
ggagtcttctttccatatgaccacttgacctttgagggggaattttaaaa
tggtagagtttacggttttggtaattttcagctctgtaaaatggtaattt
aggtaaatgtaacatggatggaatccttcccctttatcctaattctcccg
gggctctctccatcaacgtgcattgcccatagccataacttgttcttctc
cttcagccttgacaatcaagctgagcggaaacattaatgccctctccctc
cctctgtcctcctcacaggcctgctgactttcccagatggttctcatgga
ataccccgcaacgaaggtctgttcgagaacaacaagctactgcggcgtga
gaagtgttccgccgtggttcagcgggctcagagcgcctccaagtcagcca
ggaacctcactgcctgacggatctttgggcgcaggtggaaaggatccata
gagcagtgacttcccttgtatgcatgctcgtgaacagatgataccgatat
gagatgagaatgaccttgatgccacagcctgtgaggtgctccgtcccctg
cctaccaggactaagtctccacagtgtggagcgtttgaccccatgcctgc
gcaatatgtgcgtccctcgcccgatgtgctcgtaacaggcctgcctttct
attgtagccaaaactgtgagtaaccactgctgtgtcgtactctcgctact
gtcaacatacggactgtcttcatctgccacccttacttacgcagatgatc
tgggctgactcagaaccagtcccggtgctacatgaactcagaaaaagctg
gtgacataaaccagcatctgtgaagtcaggcagagctctt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_42150131_42151264
seq2: B6Ng01-086G20.g_65_1154 (reverse)

seq1  AAGAGCTCTGGCCTGGACTTCACAGAGCTGCTGTGGTCTAGGTCACCCCT  50
      ||||||||| |||| |||||||||||  |||  |||| || ||||||   
seq2  AAGAGCTCT-GCCT-GACTTCACAGA--TGC--TGGTTTATGTCACC---  41

seq1  GTCTTTTTCCTGATGTCTCCAATGGTAGCACACGGGACTGGTTCTGAGTC  100
        |||||| ||||  ||    || ||||||| ||||||||||||||||||
seq2  AGCTTTTT-CTGAGTTC----AT-GTAGCAC-CGGGACTGGTTCTGAGTC  84

seq1  TAGGCCCAGATTATCTGCGGTAAGTAAGGGTGGGCAGAATGAAGAGAGTC  150
         |||||||| |||||| |||||||||||| ||||| ||||||| ||||
seq2  --AGCCCAGATCATCTGC-GTAAGTAAGGGT-GGCAG-ATGAAGACAGTC  129

seq1  TGTATGGTTTGACAGCAGGCGGAGAGAAGGCCACAGCACTGGGTAACCCA  200
       |||||  ||||||| ||   ||||| | | ||||||| | ||| || ||
seq2  CGTATG--TTGACAGTAG--CGAGAGTACGACACAGCAGT-GGTTACTCA  174

seq1  AGGTCTTGGGGATAACAAGGAAGAAAGGGCAGGCCCTGTTCTTGAGCACA  250
        || ||||  | ||      ||||| |||||| ||||||   |||||||
seq2  CAGTTTTGGCTACAA-----TAGAAA-GGCAGG-CCTGTT-ACGAGCACA  216

seq1  TCGGGGCCAGGGAAGGACATAACTGCCGCAGGGCCTTGGGGCCAAACCCC  300
      || |||| ||||| | |||||  |  ||||||  | ||||| |||| | |
seq2  TC-GGGCGAGGGACGCACATA--TTGCGCAGG--CATGGGGTCAAA-CGC  260

seq1  TCCACACTTTTCTGCGACTGAACTCCTGGTCGGCAGGGGACGGAGCACCT  350
      |||||||| |   | ||||  | ||||||| |||||||||||||||||||
seq2  TCCACACTGT--GGAGACT-TAGTCCTGGTAGGCAGGGGACGGAGCACCT  307

seq1  CCCAGGCTGTGGCATCAAGGTCATTCTCATCTCATATCCGTTTCATTTGT  400
      | |||||||||||||||||||||||||||||||||||| || |||| |||
seq2  CACAGGCTGTGGCATCAAGGTCATTCTCATCTCATATCGGTATCATCTGT  357

seq1  TCACCTGCACGCATACAAGGGAAGCCACTGCTCTACGGATCCTTTCCAGC  450
      ||||  ||| |||||||||||||| |||||||||| |||||||||||| |
seq2  TCACGAGCATGCATACAAGGGAAGTCACTGCTCTATGGATCCTTTCCACC  407

seq1  TGCGCCCAAAGCTCCGTCAGGCAGTGAGGTTCCTGGCTGACTTGGAGGCG  500
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCCAAAGATCCGTCAGGCAGTGAGGTTCCTGGCTGACTTGGAGGCG  457

seq1  CTCTGAGCCCGCTGAACCACGGCGGAACACTTCTCACGCCGCAGTAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCCCGCTGAACCACGGCGGAACACTTCTCACGCCGCAGTAGCTT  507

seq1  GTTGTTCTCGAACAGACCTTCGTTGCGGGGTATTCCATGAGAACCATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTCGAACAGACCTTCGTTGCGGGGTATTCCATGAGAACCATCTG  557

seq1  GGAAAGTCAGCAGGCCTGTGAGGAGGACAGAGGGAGGGAGAGGGCATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCAGCAGGCCTGTGAGGAGGACAGAGGGAGGGAGAGGGCATTAA  607

seq1  TGTTTCCGCTCAGCTTGATGTGTCAAGGCTGAAGGAGAAGAACAAGTTAT  700
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTTTCCGCTCAGCTTGAT-TGTCAAGGCTGAAGGAGAAGAACAAGTTAT  656

seq1  GGCTATGGGCACTGCAGGTTGCTGGAGAGAGCCCCGGGAGAATTAGGATA  750
      ||||||||||| |||| |||| ||||||||||||||||||||||||||||
seq2  GGCTATGGGCAATGCACGTTGATGGAGAGAGCCCCGGGAGAATTAGGATA  706

seq1  AAGGGGAAGGATTCCATCCATGTTACATTTACCTAAATTACCATTCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  AAGGGGAAGGATTCCATCCATGTTACATTTACCTAAATTACCATTTTACA  756

seq1  GAGCTGAAACTTACCAAAACCGTCTACTCTGCCATTTTTAAATTCCCCCT  850
      ||||||||| |||||||||||||  ||||| ||||||| |||||||||||
seq2  GAGCTGAAAATTACCAAAACCGTAAACTCTACCATTTTAAAATTCCCCCT  806

seq1  CAAAGGTCATGTTGTCATATCGAATGAAGACTCCGACGCCATTGAACTTG  900
      ||||||||| || ||||||| ||| |||||||||||| |||  || ||||
seq2  CAAAGGTCAAGTGGTCATATGGAAAGAAGACTCCGACCCCAGAGACCTTG  856

seq1  CCCTGGGAAAACTCCCCCTCATACCTGCAGAGACACCAAGATGTAAGTTA  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCTGGGAAAACTCCCCCTCATACTTGCAGAGACACCAAGATGTAAGTTA  906

seq1  GCCTTTAGTGCATAGGTTAGCTGTGCGGGGTAACGGAGGCCAGCAGCTGT  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCTTTAGTGCATAGGTTAGCTGTGCGGGGCAACGGAGGCCAGCAGCTGT  956

seq1  CAATGTGTCTGTTAGTCAGGGTACAGAGGGAAGCTCATCTCAGAACTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGTCTGTTAGTCAGGGTACAGAGGGAAGCTCATCTCAGAACTCTT  1006

seq1  CTAGTGCCACCTGGACCACTCCTCAGTAGCAGAGAAGGGTCTGAGGCTAT  1100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAGTGCCACCTGGACCACTCCTCAGTAGCAGAGAAGGGTATGAGGCTAT  1056

seq1  GTAATGTGAGGTCTTAGTTCCAGGAAAGGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  GTAATGTGAGGTCTTAGTTCCAGGAAAGGAATTC  1090