BAC Information

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BAC

Clone NameB6Ng01-086G23
Chromosome19 (Build37)
Map Location 10,638,454 - 10,798,213
singlet/doubletdoublet
Overlap geneTmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5
Upstream geneStxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik
Downstream geneCd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086G23.bB6Ng01-086G23.g
ACCDH899834DH899835
length1,0431,156
definitionDH899834|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G23, 5' end.DH899835|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,796,881 - 10,798,213)(10,638,454 - 10,639,611)
sequence
gaattcctctctagatacctggcatcatggtcaaaagcctataatccaca
gggttaggggctggggcggcggaattcctgggttctgtcccaccagtgaa
gcacaccagctctttccagtccccaggccttagtttcctcttctaaaaag
ccctccctcatcctaagcaagagagtaaaaaggcatggcatggccacgct
gcctgctcctttgccactgttgtcttgagatagctgccaagctcctttgc
cactgttttcttgaaatagctgccaccagccacccagaggccccagggac
aagacagagcttggtcggagaagtgctagagaggatgtgccgtgctcgac
attgccaagcccccacctcaccagcccttcctttctgcagatttccagcc
caaggttcagagccgcctggtcgggggcagcagtgtgtgtgagggcatcg
ctgaagtgcgccagagatcacagtgggaggccctgtgtgacagttctgca
gccaggggccggggacggtgggaagagctatgtcgggagcagcagtgtgg
cgacctcatctccttccacacggtggatgctgacaaaacctcccccgggt
tcctctgtgcccaggagaagctgtctcagtgttaccatctccagaaaaaa
aaacactgcaacaagagggtattcgtcacatgtgagttgactgcagaggg
cagtgaaagacttttcctctggaacctagtcagtgaacatagctctaaag
agcagatctggaaggcagaaaaggcttctgggaaaaggagagtaaatggg
attctgggagcaaaaatcagcaatgatgagtagagcaggcaaggctcacg
tggacctctgtcaagctactgagacatgccaggactctcccttcccttct
atctcctgctttcccgagatgcaagctagaaaattagggaggggtgggtg
aaacatacttaatatttggaatggtaactgaataatatctaagagaaatt
ggtacatggatgggtgacatgaatggagggtggatgggatatg
gaattccatccctgggacctatgtaaagggtggagaggactgactacccc
atctttttctgtttgttaggcttgttttgattttaagacagggtttcact
atgtagccctggatatccttgaactcactctgtagaccaggttggttttg
aattcagagagatctgcctgcctctgcctcttgaatgctggaattgaagg
caatcgttagatcttaagctgtccaaatattcaaaataagcttaagctgg
accatcagggggtttcaggtggttaggtaaaaaccagcttttctcagaaa
cttgtggcgctggttcccatctgcccaaaggagtcttaacccactgagcc
atctccccagctttccaaaactttattagatacataaacacttacagtgt
ctctagattttatttggactgccaccccttcttctactagacaagaagag
aactaatcaccttaacccacccaggagggaagctgcactgcagcagcatc
tcctaagcctgcctccaaagattaaaccaacggcctcatgtgggcttgcg
cttggcaagcactctacccgcgagttattccctagctcaccactgccatt
ttaacacacctcactacttgcttcctcttggttccaggaaggagacctga
gccttcgccctcctccgacttatgggggctgggttctaattgtagcacca
tcagcctgaacccctgctctgctttgcggagactgaggcttccatatttt
tagcctctagcctttctctagtcttagaatttggaaatatctcacggcaa
attttgttatgtttcagagctcctcaagtccccagttttgtccctccagt
gtcctggggccactcagtgcaactggcttgtttggtgccggggtccattg
ttaggttcattcctagcctcttgcacaactcagaatagcaaatgaaaaaa
tgaaaagtcccatgaaaaagttcctgcaatcgtggactcactactctgca
gtggtagctctggcccctttgcccttcagcatcagttggaaacatacata
cccattaggaacatagtgtatatgttacttgtagatgttaaggtccaaga
cctggaattccaacacaggtactgagcattcatccttaggtacccaacta
aagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10796881_10798213
seq2: B6Ng01-086G23.b_49_1091 (reverse)

seq1  CATATCAAGAACCAGCCAGTCATCCATTAGTTCAACCACCTATCTGTCAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTATTCATCCATCTATTCATCCCTCCTTCCCTTCAGTCATGTATCTATTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCCATCTATCTGCTTATGTATCTACCATTAATCTATCCATTCATCTACTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCATTGATTCATCTGTTTATACAGACATCCATCCATCCATCCATCCAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCATCCATCCATCCACTGTTTATCCATCTGTTTATACAACCATTGTATAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TCACCCATCTATCCATCCACCCATCTACCTCCATTCCATGTCCCTATCCA  300
                                          ||| ||     |||
seq2  ------------------------------------CATATC-----CCA  9

seq1  TCCACCCTCCATTCATGTCACCCATCCATGTACCAATTTCTCTTAGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCTCCATTCATGTCACCCATCCATGTACCAATTTCTCTTAGATAT  59

seq1  TATTCAGTTACCATT-CAAATATTAAGTATGTTTCACCCACCCCTCCCTA  399
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTCAGTTACCATTCCAAATATTAAGTATGTTTCACCCACCCCTCCCTA  109

seq1  ATTTTCTAGCTTGCATCTCGGGAAAGCAGGAGATAGAAGGGAAGGGAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAGCTTGCATCTCGGGAAAGCAGGAGATAGAAGGGAAGGGAGAG  159

seq1  TCCTGGCATGTCTCAGTAGCTTGACAGAGGTCCACGTGAGCCTTGCCTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCATGTCTCAGTAGCTTGACAGAGGTCCACGTGAGCCTTGCCTGC  209

seq1  TCTACTCATCATTGCTGATTTTTGCTCCCAGAATCCCATTTACTCTCCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCATCATTGCTGATTTTTGCTCCCAGAATCCCATTTACTCTCCTT  259

seq1  TTCCCAGAAGCCTTTTCTGCCTTCCAGATCTGCTCTTTAGAGCTATGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAAGCCTTTTCTGCCTTCCAGATCTGCTCTTTAGAGCTATGTTC  309

seq1  ACTGACTAGGTTCCAGAGGAAAAGTCTTTCACTGCCCTCTGCAGTCAACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTAGGTTCCAGAGGAAAAGTCTTTCACTGCCCTCTGCAGTCAACT  359

seq1  CACATGTGACGAATACCCTCTTGTTGCAGTGTTTTTTTTTCTGGAGATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGACGAATACCCTCTTGTTGCAGTGTTTTTTTTTCTGGAGATGG  409

seq1  TAACACTGAGACAGCTTCTCCTGGGCACAGAGGAACCCGGGGGAGGTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGAGACAGCTTCTCCTGGGCACAGAGGAACCCGGGGGAGGTTTT  459

seq1  GTCAGCATCCACCGTGTGGAAGGAGATGAGGTCGCCACACTGCTGCTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCATCCACCGTGTGGAAGGAGATGAGGTCGCCACACTGCTGCTCCC  509

seq1  GACATAGCTCTTCCCACCGTCCCCGGCCCCTGGCTGCAGAACTGTCACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGCTCTTCCCACCGTCCCCGGCCCCTGGCTGCAGAACTGTCACAC  559

seq1  AGGGCCTCCCACTGTGATCTCTGGCGCACTTCAGCGATGCCCTCACACAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTCCCACTGTGATCTCTGGCGCACTTCAGCGATGCCCTCACACAC  609

seq1  ACTGCTGCCCCCGACCAGGCGGCTCTGAACCTTGGGCTGGAAATCTGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCCCCCGACCAGGCGGCTCTGAACCTTGGGCTGGAAATCTGCAG  659

seq1  AAAGGAAGGGCTGGTGAGGTGGGGGCTTGGCAATGTCGAGCACGGCACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGGCTGGTGAGGTGGGGGCTTGGCAATGTCGAGCACGGCACAT  709

seq1  CCTCTCTAGCACTTCTCCGACCAAGCTCTGTCTTGTCCCTGGGGCCTCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTAGCACTTCTCCGACCAAGCTCTGTCTTGTCCCTGGGGCCTCTG  759

seq1  GGTGGCTGGTGGCAGCTATTTCAAGAAAACAGTGGCAAAGGAGCTTGGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTGGTGGCAGCTATTTCAAGAAAACAGTGGCAAAGGAGCTTGGCA  809

seq1  GCTATCTCAAGACAACAGTGGCAAAGGAGCAGGCAGCGTGGCCATGCCAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTCAAGACAACAGTGGCAAAGGAGCAGGCAGCGTGGCCATGCCAT  859

seq1  GCCTTTTTACTCTCTTGCTTAGGATGAGGGAGGGCTTTTTAGAAGAGGAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTACTCTCTTGCTTAGGATGAGGGAGGGCTTTTTAGAAGAGGAA  909

seq1  ACTAAGGCCTGGGGACTGGAAAGAGCTGGTGTGCTTCACTGGTGGGACAG  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGCCTGGGGACTGGAAAGAGCTGGTGTGCTTCACTGGTGGGACAG  959

seq1  AACCCAGGAATTCCGCCGCCCCAGCCCCTAACCCTGTGGATTATAGGCTT  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGAATTCCGCCGCCCCAGCCCCTAACCCTGTGGATTATAGGCTT  1009

seq1  TTGGCCATGATGCCAGGTATCTAGAGAGGAATTC  1333
      ||| ||||||||||||||||||||||||||||||
seq2  TTGACCATGATGCCAGGTATCTAGAGAGGAATTC  1043

seq1: chr19_10638454_10639611
seq2: B6Ng01-086G23.g_70_1225

seq1  GAATTCCATCCCTGGGACCTATGTAAAGGGTGGAGAGGACTGACTACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCTGGGACCTATGTAAAGGGTGGAGAGGACTGACTACCCC  50

seq1  ATCTTTTTCTGTTTGTTAGGCTTGTTTTGATTTTAAGACAGGGTTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCTGTTTGTTAGGCTTGTTTTGATTTTAAGACAGGGTTTCACT  100

seq1  ATGTAGCCCTGGATATCCTTGAACTCACTCTGTAGACCAGGTTGGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCCTGGATATCCTTGAACTCACTCTGTAGACCAGGTTGGTTTTG  150

seq1  AATTCAGAGAGATCTGCCTGCCTCTGCCTCTTGAATGCTGGAATTGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGAGATCTGCCTGCCTCTGCCTCTTGAATGCTGGAATTGAAGG  200

seq1  CAATCGTTAGATCTTAAGCTGTCCAAATATTCAAAATAAGCTTAAGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCGTTAGATCTTAAGCTGTCCAAATATTCAAAATAAGCTTAAGCTGG  250

seq1  ACCATCAGGGGGTTTCAGGTGGTTAGGTAAAAACCAGCTTTTCTCAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAGGGGGTTTCAGGTGGTTAGGTAAAAACCAGCTTTTCTCAGAAA  300

seq1  CTTGTGGCGCTGGTTCCCATCTGCCCAAAGGAGTCTTAACCCACTGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGCGCTGGTTCCCATCTGCCCAAAGGAGTCTTAACCCACTGAGCC  350

seq1  ATCTCCCCAGCTTTCCAAAACTTTATTAGATACATAAACACTTACAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCAGCTTTCCAAAACTTTATTAGATACATAAACACTTACAGTGT  400

seq1  CTCTAGATTTTATTTGGACTGCCACCCCTTCTTCTACTAGACAAGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGATTTTATTTGGACTGCCACCCCTTCTTCTACTAGACAAGAAGAG  450

seq1  AACTAATCACCTTAACCCACCCAGGAGGGAAGCTGCACTGCAGCAGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATCACCTTAACCCACCCAGGAGGGAAGCTGCACTGCAGCAGCATC  500

seq1  TCCTAAGCCTGCCTCCAAAGATTAAACCAACGGCCTCATGTGGGCTTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGCCTGCCTCCAAAGATTAAACCAACGGCCTCATGTGGGCTTGCG  550

seq1  CTTGGCAAGCACTCTACCCGCGAGTTATTCCCTAGCTCACCACTGCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAAGCACTCTACCCGCGAGTTATTCCCTAGCTCACCACTGCCATT  600

seq1  TTAACACACCTCACTACTTGCTTCCTCTTGGTTCCAGGAAGGAGACCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACACCTCACTACTTGCTTCCTCTTGGTTCCAGGAAGGAGACCTGA  650

seq1  GCCTTCGCCCTCCTCCGACTTATGGGGGCTGGGTTCTAATTGTAGCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGCCCTCCTCCGACTTATGGGGGCTGGGTTCTAATTGTAGCACCA  700

seq1  TCAGCCTGAACCCCTGCTCTGCTTTGCGGAGACTGAGGCTTCCATATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGAACCCCTGCTCTGCTTTGCGGAGACTGAGGCTTCCATATTTT  750

seq1  TAGCCTCTAGCCTTTCTCTAGTCTTAGAATTTGGAAATATCTCACGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTAGCCTTTCTCTAGTCTTAGAATTTGGAAATATCTCACGGCAA  800

seq1  ATTTTGTTATGTTTCAGAGCTCCTCAAGTCCCCAGTTTTGTCCCTCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTATGTTTCAGAGCTCCTCAAGTCCCCAGTTTTGTCCCTCCAGT  850

seq1  GTCCTGGGGCCACTCAGTGCAACTGGCTTGTTTGGTGCCGGGGTCCATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGGCCACTCAGTGCAACTGGCTTGTTTGGTGCCGGGGTCCATTG  900

seq1  TTAGGTTCATTCCTAGCCTCTTGCACAAACTCAGAATAGCAAATGAAAAA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAGGTTCATTCCTAGCCTCTTGCAC-AACTCAGAATAGCAAATGAAAAA  949

seq1  ATGAAAAAGTCCCATGAAAAAGTTCCTGCAATCGTGGACTCACTACTCTG  1000
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATG-AAAAGTCCCATGAAAAAGTTCCTGCAATCGTGGACTCACTACTCTG  998

seq1  CAGTGGTAGGCTCTGGCCCCTTTG-CCTTCAGCATCAGTTGGAAACATAC  1049
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  CAGTGGTA-GCTCTGGCCCCTTTGCCCTTCAGCATCAGTTGGAAACATAC  1047

seq1  ATACACAT--AGAACATACGTGTATATGTTAC-TGTAGTTGTTAGGGTCA  1096
      |||| |||   ||||||| ||||||||||||| ||||| ||||| |||| 
seq2  ATACCCATTAGGAACATA-GTGTATATGTTACTTGTAGATGTTAAGGTCC  1096

seq1  CAG-CCTGGAAATTCCAACA-AGGTACATTGAGGCATTCATCCTTA-GTA  1143
       || ||||| |||||||||| ||||||  ||| ||||||||||||| |||
seq2  AAGACCTGG-AATTCCAACACAGGTAC--TGA-GCATTCATCCTTAGGTA  1142

seq1  CACCAACTAAAGAGA  1158
      | |||||||||||||
seq2  C-CCAACTAAAGAGA  1156