BAC Information

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BAC

Clone NameB6Ng01-086M20
Chromosome19 (Build37)
Map Location 16,872,786 - 16,943,164
singlet/doubletdoublet
Overlap genenone
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
Downstream geneFoxb2, A230083H22Rik, Gcnt1, Rfk, Pcsk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086M20.bB6Ng01-086M20.g
ACCDH900103DH900104
length1,1841,186
definitionDH900103|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M20, 5' end.DH900104|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,941,964 - 16,943,164)(16,872,786 - 16,873,973)
sequence
gaattccaagcatctttgtactagggggttggaaggctaatcaacacatc
ctcccggggctcaaaggtgacgtttgccagcttggcatcagtacaggagc
cagaggagaacatggaaatagttctccctaggaaaagggtcatggaccat
caaagccacagactccccttaaattcaattcacgtgctcaaactgccaat
cctaaaagtacacaagattgggtggtagtgtttgtgacaaggttgctgag
tctgtcagtagttctgcagagggtgcaggggggcagagcagagatagtgt
tgaaatgggaaactaaaaaaacaatgacaaaaacagtggatagcgggggt
ttaagggcagagtggggattcaaacacacatggtaagtccttgaattcta
gagggcaaaaaaacagtctcttctgaattgaatcaatgtaaccatgatgc
tcattcaaagtatttccattaatattatctttctaagttcaagttcaagg
gctacctcttgccctttgggggagactggagggttctgcttgggttttga
attccatcttaaactattgtttaaacggtactagtttggcagaagtccag
atagactctgtcctaagcactttccccctttaaccatcccttccgctccc
acacacacacaccctgtgtgtcttgaagaaaattcaagccacatgttgct
ttttcctccttgcatccaaatgcaattttactgaattttagcacggtcca
tgaaattcaaattctgtgttctaatccataagaggttcccatgatctaca
caagtcacatgacctgttcacatatcattatgcagaaaataaagcctgcg
agacctgcagttgtgttttacagagacattttggtaaagaatgccttgca
gagaatgccgtatcgaaaggcatttttataaattatcaaaaaaatctaga
aaatgcacttaataactcatgaaaatatctaagtaatatgcaaagagatg
tttacttgtgttatctgatccaagtagttcttttttgccacagtaacaga
ctctgggcatgagggacacccaggctgtgtcattagtcaagactccatac
tggaggcgtcatttacatgccatataatgggttcatctggacctcagtct
tgtcaacacttcactggggcagcaggtttttact
gaattctttctttgatctgttatcagtgccttatctgggattaaaaagaa
aagatttgtcgctaactctttaggaaaattcacacaaaaattgcctctta
aatttccttccaagtaaatacttgatgtactgtggacactttttaattct
tattagggaagcagagcactaggataatgcaaatagaagtgtttcacgtg
ttttgttttttccctcttcatcttattcctgccagcctgctgtcctgggt
cttacattacttgcttcttgtttattttcttctctttttcttcctctttg
ctattttttttcttgttttctgttttcagcatgctgggacatacctgtaa
ttctggcacttgggagggtgaggcaggaggttcatgtgtttgaaaccagc
tgggttacatgataagactttatctctatttttgaaaaaaaaaaaaccaa
acaaaacaagtgtgcattaaatatacacagggtgcttctaagatttacac
acatgtatgtaaagtactttgactacattcaccccattagcttctctggc
cctgcctgtttcctgttgcttccttccactttccaaataacctaccttcc
attctcacacctttgtttttaaatctaaattcctcacaaaaagtgaaaat
tagcgtaatgattatataaattattttcatataatttttcataatgggct
tcagttgagagtttcaagacaacctccttgtctcaaattaagctaaaatg
gtagggacttgttctgagtcacacagaactggaattttctggccgaatct
actgtttcatttgcttctttctcatttgctccccaagctcttcacagtct
agcacgtacttttctgttgttgttgctgttgctgctgctgttaatatgac
attccatatgcgagttcaaacattgagaatttgtctttctgagtttgaat
catttcagccacagggtgatcttcagttaaacccactttactaaagcatt
atgttaggtttcaggttgggaagaggagttggagagaggccctgagtgat
tgtctccaggtaagttttataatgtcagcagtacccaatagagagagatg
ggagtaggtcaggtccacaagaacaaaacagttcttattttgaggtcctt
tgggagagagagcggaagagaacctggatttcaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16941964_16943164
seq2: B6Ng01-086M20.b_49_1232 (reverse)

seq1  AGTAAAAACATGCTGCCC--GTGAAGGTGTTGACAAGACTGAGGGCTCAG  48
      ||||||||| ||||||||  ||||| |||||||||||||||||| | |||
seq2  AGTAAAAACCTGCTGCCCCAGTGAA-GTGTTGACAAGACTGAGGTC-CAG  48

seq1  ATGGGAAAACACATTATAATGCATGGTAAAAATGACGCCT-CAGTAATGG  97
      |||    ||| |||||||  |||||    ||||||||||| |||| ||||
seq2  ATG----AACCCATTATATGGCATG---TAAATGACGCCTCCAGT-ATGG  90

seq1  AGTCTGTGACTTATGAACACAGCCTGGGTGTCCCTCATGCCCAGGAGTCT  147
      ||||| ||||| ||| ||||||||||||||||||||||||||| ||||||
seq2  AGTCT-TGACTAATG-ACACAGCCTGGGTGTCCCTCATGCCCA-GAGTCT  137

seq1  GTTACTTGTGGCAAAAAAGAACTACTTGGATCAGATTAAACACAAGTAAA  197
      ||||| ||||||||||||||||||||||||||||||  ||||||||| ||
seq2  GTTAC-TGTGGCAAAAAAGAACTACTTGGATCAGAT--AACACAAGT-AA  183

seq1  ACATCTTCTTTGCAATATTACTTAGATATTTTCATGAGTTATTAAGTTGC  247
      ||||| ||||||| |||||||||||||||||||||||||||||||| |||
seq2  ACATC-TCTTTGC-ATATTACTTAGATATTTTCATGAGTTATTAAG-TGC  230

seq1  ATTTTCTAGATTTTTTTGATAATTTTATAAAATGCCTTTCGATACGGCAT  297
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  ATTTTCTAGATTTTTTTGATAATTTATAAAAATGCCTTTCGATACGGCAT  280

seq1  TCTCTGCAAGGCATTCTTTACCAAAATGTCTCTGTAAAACACAACTGCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCAAGGCATTCTTTACCAAAATGTCTCTGTAAAACACAACTGCAG  330

seq1  GTCTCGCAGGCTTTATTTTCTGCATAATGATATGTGAACAGGTCATGTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGCAGGCTTTATTTTCTGCATAATGATATGTGAACAGGTCATGTGA  380

seq1  CTTGTGTAGATCATGGGAACCTCTTATGGATTAGAACACAGAATTTGAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTAGATCATGGGAACCTCTTATGGATTAGAACACAGAATTTGAAT  430

seq1  TTCATGGACCGTGCTAAAATTCAGTAAAATTGCATTTGGATGCAAGGAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGACCGTGCTAAAATTCAGTAAAATTGCATTTGGATGCAAGGAGG  480

seq1  AAAAAGCAACATGTGGCTTGAATTTTCTTCAAGACACACAGGGTGTGTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAACATGTGGCTTGAATTTTCTTCAAGACACACAGGGTGTGTGT  530

seq1  GTGTGGGAGCGGAAGGGATGGTTAAAGGGGGAAAGTGCTTAGGACAGAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGAGCGGAAGGGATGGTTAAAGGGGGAAAGTGCTTAGGACAGAGT  580

seq1  CTATCTGGACTTCTGCCAAACTAGTACCGTTTAAACAATAGTTTAAGATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGGACTTCTGCCAAACTAGTACCGTTTAAACAATAGTTTAAGATG  630

seq1  GAATTCAAAACCCAAGCAGAACCCTCCAGTCTCCCCCAAAGGGCAAGAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCCAAGCAGAACCCTCCAGTCTCCCCCAAAGGGCAAGAGG  680

seq1  TAGCCCTTGAACTTGAACTTAGAAAGATAATATTAATGGAAATACTTTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTTGAACTTGAACTTAGAAAGATAATATTAATGGAAATACTTTGA  730

seq1  ATGAGCATCATGGTTACATTGATTCAATTCAGAAGAGACTGTTTTTTTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCATCATGGTTACATTGATTCAATTCAGAAGAGACTGTTTTTTTGC  780

seq1  CCTCTAGAATTCAAGGACTTACCATGTGTGTTTGAATCCCCACTCTGCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGAATTCAAGGACTTACCATGTGTGTTTGAATCCCCACTCTGCCC  830

seq1  TTAAACCCCCGCTATCCACTGTTTTTGTCATTGTTTTTTTAGTTTCCCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCCCCGCTATCCACTGTTTTTGTCATTGTTTTTTTAGTTTCCCAT  880

seq1  TTCAACACTATCTCTGCTCTGCCCCCCTGCACCCTCTGCAGAACTACTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACTATCTCTGCTCTGCCCCCCTGCACCCTCTGCAGAACTACTGA  930

seq1  CAGACTCAGCAACCTTGTCACAAACACTACCACCCAATCTTGTGTACTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGCAACCTTGTCACAAACACTACCACCCAATCTTGTGTACTTT  980

seq1  TAGGATTGGCAGTTTGAGCACGTGAATTGAATTTAAGGGGAGTCTGTGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTGGCAGTTTGAGCACGTGAATTGAATTTAAGGGGAGTCTGTGGC  1030

seq1  TTTGATGGTCCATGACCCTTTTCCTAGGGAGAACTATTTCCATGTTCTCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGTCCATGACCCTTTTCCTAGGGAGAACTATTTCCATGTTCTCC  1080

seq1  TCTGGCTCCTGTACTGATGCCAAGCTGGCAAACGTCACCTTTGAGCCCCG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCCTGTACTGATGCCAAGCTGGCAAACGTCACCTTTGAGCCCCG  1130

seq1  GGAGGATGTGTTGATTAGCCTTCCAACCCCCTAGTACAAAGATGCTTGGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGTGTTGATTAGCCTTCCAACCCCCTAGTACAAAGATGCTTGGA  1180

seq1  ATTC  1201
      ||||
seq2  ATTC  1184

seq1: chr19_16872786_16873973
seq2: B6Ng01-086M20.g_67_1252

seq1  GAATTCTTTCTTTGATCTGTTATCAGTGCCTTATCTGGGATTAAAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTGATCTGTTATCAGTGCCTTATCTGGGATTAAAAAGAA  50

seq1  AAGATTTGTCGCTAACTCTTTAGGAAAATTCACACAAAAATTGCCTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTGTCGCTAACTCTTTAGGAAAATTCACACAAAAATTGCCTCTTA  100

seq1  AATTTCCTTCCAAGTAAATACTTGATGTACTGTGGACACTTTTTAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTTCCAAGTAAATACTTGATGTACTGTGGACACTTTTTAATTCT  150

seq1  TATTAGGGAAGCAGAGCACTAGGATAATGCAAATAGAAGTGTTTCACGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGGAAGCAGAGCACTAGGATAATGCAAATAGAAGTGTTTCACGTG  200

seq1  TTTTGTTTTTTCCCTCTTCATCTTATTCCTGCCAGCCTGCTGTCCTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTCCCTCTTCATCTTATTCCTGCCAGCCTGCTGTCCTGGGT  250

seq1  CTTACATTACTTGCTTCTTGTTTATTTTCTTCTCTTTTTCTTCCTCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTACTTGCTTCTTGTTTATTTTCTTCTCTTTTTCTTCCTCTTTG  300

seq1  CTATTTTTTTTCTTGTTTTCTGTTTTCAGCATGCTGGGACATACCTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTTTCTTGTTTTCTGTTTTCAGCATGCTGGGACATACCTGTAA  350

seq1  TTCTGGCACTTGGGAGGGTGAGGCAGGAGGTTCATGTGTTTGAAACCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCACTTGGGAGGGTGAGGCAGGAGGTTCATGTGTTTGAAACCAGC  400

seq1  TGGGTTACATGATAAGACTTTATCTCTATTTTTGAAAAAAAAAAAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTACATGATAAGACTTTATCTCTATTTTTGAAAAAAAAAAAACCAA  450

seq1  ACAAAACAAGTGTGCATTAAATATACACAGGGTGCTTCTAAGATTTACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAGTGTGCATTAAATATACACAGGGTGCTTCTAAGATTTACAC  500

seq1  ACATGTATGTAAAGTACTTTGACTACATTCACCCCATTAGCTTCTCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGTAAAGTACTTTGACTACATTCACCCCATTAGCTTCTCTGGC  550

seq1  CCTGCCTGTTTCCTGTTGCTTCCTTCCACTTTCCAAATAACCTACCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGTTTCCTGTTGCTTCCTTCCACTTTCCAAATAACCTACCTTCC  600

seq1  ATTCTCACACCTTTGTTTTTAAATCTAAATTCCTCACAAAAAGTGAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACACCTTTGTTTTTAAATCTAAATTCCTCACAAAAAGTGAAAAT  650

seq1  TAGCGTAATGATTATATAAATTATTTTCATATAATTTTTCATAATGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTAATGATTATATAAATTATTTTCATATAATTTTTCATAATGGGCT  700

seq1  TCAGTTGAGAGTTTCAAGACAACCTCCTTGTCTCAAATTAAGCTAAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGAGAGTTTCAAGACAACCTCCTTGTCTCAAATTAAGCTAAAATG  750

seq1  GTAGGGACTTGTTCTGAGTCACACAGAACTGGAATTTTCTGGCCGAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGACTTGTTCTGAGTCACACAGAACTGGAATTTTCTGGCCGAATCT  800

seq1  ACTGTTTCATTTGCTTCTTTCTCATTTGCTCCCCAAGCTCTTCACAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCATTTGCTTCTTTCTCATTTGCTCCCCAAGCTCTTCACAGTCT  850

seq1  AGCACGTACTTTTCTGTTGTTGTTGCTGTTGCTGCTGCTGTTAATATGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTACTTTTCTGTTGTTGTTGCTGTTGCTGCTGCTGTTAATATGAC  900

seq1  ATTCCATATGCGAGTTCAAACATTGAGAATTTGTCTTTCTGAGTTTGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATATGCGAGTTCAAACATTGAGAATTTGTCTTTCTGAGTTTGAAT  950

seq1  CATTTCAGCCAACAGGGTGATCTTCAGTTAAACCCACTTTACTAAAAGCA  1000
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  CATTTCAGCC-ACAGGGTGATCTTCAGTTAAACCCACTTTACT-AAAGCA  998

seq1  TTATGTTAGGTTTCAGGGTGGG-AGAGGAAGTTTGAGAAGAGGCCCTGAG  1049
      ||||||||||||||||| |||| ||||| |||| ||| ||||||||||||
seq2  TTATGTTAGGTTTCAGGTTGGGAAGAGG-AGTTGGAG-AGAGGCCCTGAG  1046

seq1  TTGAATTGTCCTTCAGGTAAAAGTTTTATTAATGTCAGCAGTACCCCA-A  1098
      |   ||||| || |||||  |||||||| ||||||||||||||||| | |
seq2  T--GATTGT-CTCCAGGT--AAGTTTTA-TAATGTCAGCAGTACCCAATA  1090

seq1  TAGAGAGATGTGATGTAGTGTCAGTCCCACAAG-ACAAAACAG-TCTTAT  1146
       ||||||||| || |||| |||||  ||||||| ||||||||| ||||||
seq2  GAGAGAGATGGGA-GTAG-GTCAGGTCCACAAGAACAAAACAGTTCTTAT  1138

seq1  TTTGAGGTCCCTTGG--GAGAGAGCAG-AGAGAACCTG---ATCAATA  1188
      |||||||||| ||||  |||||||| | ||||||||||    ||||||
seq2  TTTGAGGTCCTTTGGGAGAGAGAGCGGAAGAGAACCTGGATTTCAATA  1186