BAC Information

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BAC

Clone NameB6Ng01-086O05
Chromosome19 (Build37)
Map Location 46,532,966 - 46,670,761
singlet/doubletdoublet
Overlap geneSufu, Trim8, Arl3, Sfxn2
Upstream geneBtrc, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a
Downstream geneD19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086O05.bB6Ng01-086O05.g
ACCDH900166DH900167
length7011,127
definitionDH900166|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O05, 5' end.DH900167|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,670,063 - 46,670,761)(46,532,966 - 46,534,112)
sequence
gaattcccactcagaggtgtcccagccctctttggtatgagacctaatgg
gccaaggaaaggaactatttgtccatgggttttgtttttgttttgtgttt
gtgtttgtttttgtcttttttagtacaaataactccaaggacttgaaaaa
ctcaaatctagaagcattcccaatgggatagcccagtcagggcatcatgg
ggaagagtagagatgagtccccaagaagattcacatagctcctttatctc
tccctggataaggagctggaaagagggctcagcaggtaagagctgccgct
gctcttcaaaaggaccagggtttgaccgcaggctggctcacagtagtaac
tccagtttcagatgatctgacatgctctctgacctctgtgggcacggcat
gcagagacatgcatgggagcaaaacacccacccataaaaatgttttaaaa
aatgataaaaagcttttttttttaagaatcgcaagggtaaatgtttctct
tgcttaggaaggaggaagcaagccgggcgtggtggcgcacacctttaatc
ccagcactcgggaggcagaggcaggtggatttctgagttcggggccagtc
tggtctacagagtgagttccaggatcgccagggctatccccccccccccc
caaaaaggaggaagcacgagaagatgaagagaataggtgtatcctccgtc
c
gaattctcctgttgtgatattacctctgtaagatttccacataacacaca
cacacactcactcgtccctccctcccttccttctttctatttattattta
tttatttattcttacttatttatttctgtttaagatggaagtcttactct
gtagcccagactggtcgggaacttacaggtagccaatagcacaggctggc
ctaaactcagggccgtgctccttccttggccttccgaatagtggggttgc
aggtaagagccacacacacagacctgctcctctctttacctctgtgcagg
cctctgcccccgtctttggatggggtgactttgctgcccctcactcccat
ctcatcctggccggccggccggggagttgttctttagctgtttgttttgt
tcagcctatggtgtccatgaagtgtaattagaagaagctctctggtttca
tccactctgccagtgggtttgggtgaaggaggtgagtttccccctaggaa
ggcagctggttgctgtggtgccactttgtacgtaggacagattaggatgt
gaccccgctgtcggtcggggttatgtgttagggcagcagacagcctggag
cctctctgtcacggtggcttcactcgcagttctgatactggcacagtaca
gtcgcttgctctggaaagcccagagagaaccctgcttcagggctacagtg
gagaggccagggcctcgtctccactgctcctggaacacgggctttgtttt
ggctccttcactgtgaacctagctgtcgtgctaaaggtctgtatggccgt
gctcagagccacgtctgaaaggacaaagctgacgtggctcaacatatgtt
ttgactctggtctttgcgccacttctgcaagagaccaagcagtggccatc
gttcaagttcctggctggcgctttgagtctaggtgcaaacactgcatccc
cttcacacgttgcacaatcgggaatatttttatcatctattctgatcttc
gtgtcactcacacttcagcagtgagtcatttctgcaggaaggaaaggaaa
gttcaagtgtacagctgagaagaaatgactcagtgtctctcaggaagaag
ctgggcaagtggctctcacccggacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_46670063_46670761
seq2: B6Ng01-086O05.b_49_749 (reverse)

seq1  GGACAGAGGATACA-CTAATCTCTTCCTCTTCTCCTGCTTCCTCCTTTTT  49
      |||| ||||||||| ||| ||||||| ||||||| |||||||||||||||
seq2  GGACGGAGGATACACCTATTCTCTTCATCTTCTCGTGCTTCCTCCTTTTT  50

seq1  -TGGGGGGGGGGGGATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACC  98
        |||||||||||||||||||||||  |||||||||||||||||||||||
seq2  GGGGGGGGGGGGGGATAGCCCTGGCGATCCTGGAACTCACTCTGTAGACC  100

seq1  AGACTGGCCCCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCCCCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTG  150

seq1  GGATTAAAGGTGTGCGCCACCACGCCCGGCTTGCTTCCTCCTTCCTAAGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGTGTGCGCCACCACGCCCGGCTTGCTTCCTCCTTCCTAAGC  200

seq1  AAGAGAAACATTTACCCTTGCGATTCTTAAAAAAAAAAGCTTTTTATCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACATTTACCCTTGCGATTCTTAAAAAAAAAAGCTTTTTATCAT  250

seq1  TTTTTAAAACATTTTTATGGGTGGGTGTTTTGCTCCCATGCATGTCTCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAACATTTTTATGGGTGGGTGTTTTGCTCCCATGCATGTCTCTG  300

seq1  CATGCCGTGCCCACAGAGGTCAGAGAGCATGTCAGATCATCTGAAACTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCGTGCCCACAGAGGTCAGAGAGCATGTCAGATCATCTGAAACTGG  350

seq1  AGTTACTACTGTGAGCCAGCCTGCGGTCAAACCCTGGTCCTTTTGAAGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTACTGTGAGCCAGCCTGCGGTCAAACCCTGGTCCTTTTGAAGAG  400

seq1  CAGCGGCAGCTCTTACCTGCTGAGCCCTCTTTCCAGCTCCTTATCCAGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGCAGCTCTTACCTGCTGAGCCCTCTTTCCAGCTCCTTATCCAGGG  450

seq1  AGAGATAAAGGAGCTATGTGAATCTTCTTGGGGACTCATCTCTACTCTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAAGGAGCTATGTGAATCTTCTTGGGGACTCATCTCTACTCTTC  500

seq1  CCCATGATGCCCTGACTGGGCTATCCCATTGGGAATGCTTCTAGATTTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGATGCCCTGACTGGGCTATCCCATTGGGAATGCTTCTAGATTTGA  550

seq1  GTTTTTCAAGTCCTTGGAGTTATTTGTACTAAAAAAGACAAAAACAAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAAGTCCTTGGAGTTATTTGTACTAAAAAAGACAAAAACAAACA  600

seq1  CAAACACAAAACAAAAACAAAACCCATGGACAAATAGTTCCTTTCCTTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAAAACAAAAACAAAACCCATGGACAAATAGTTCCTTTCCTTGG  650

seq1  CCCATTAGGTCTCATACCAAAGAGGGCTGGGACACCTCTGAGTGGGAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAGGTCTCATACCAAAGAGGGCTGGGACACCTCTGAGTGGGAATT  700

seq1  C  699
      |
seq2  C  701

seq1: chr19_46532966_46534112
seq2: B6Ng01-086O05.g_68_1194

seq1  GAATTCTCCTGTTGTGATATTACCTCTGTAAGATTTCCACATAACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTTGTGATATTACCTCTGTAAGATTTCCACATAACACACA  50

seq1  CACACACTCACTCGTCCCTCCCTCCCTTCCTTCTTTCTATTTATTATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCACTCGTCCCTCCCTCCCTTCCTTCTTTCTATTTATTATTTA  100

seq1  TTTATTTATTCTTACTTATTTATTTCTGTTTAAGATGGAAGTCTTACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTCTTACTTATTTATTTCTGTTTAAGATGGAAGTCTTACTCT  150

seq1  GTAGCCCAGACTGGTCGGGAACTTACAGGTAGCCAATAGCACAGGCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCAGACTGGTCGGGAACTTACAGGTAGCCAATAGCACAGGCTGGC  200

seq1  CTAAACTCAGGGCCGTGCTCCTTCCTTGGCCTTCCGAATAGTGGGGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCAGGGCCGTGCTCCTTCCTTGGCCTTCCGAATAGTGGGGTTGC  250

seq1  AGGTAAGAGCCACACACACAGACCTGCTCCTCTCTTTACCTCTGTGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGAGCCACACACACAGACCTGCTCCTCTCTTTACCTCTGTGCAGG  300

seq1  CCTCTGCCCCCGTCTTTGGATGGGGTGACTTTGCTGCCCCTCACTCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCCCGTCTTTGGATGGGGTGACTTTGCTGCCCCTCACTCCCAT  350

seq1  CTCATCCTGGCCGGCCGGCCGGGGAGTTGTTCTTTAGCTGTTTGTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTGGCCGGCCGGCCGGGGAGTTGTTCTTTAGCTGTTTGTTTTGT  400

seq1  TCAGCCTATGGTGTCCATGAAGTGTAATTAGAAGAAGCTCTCTGGTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTATGGTGTCCATGAAGTGTAATTAGAAGAAGCTCTCTGGTTTCA  450

seq1  TCCACTCTGCCAGTGGGTTTGGGTGAAGGAGGTGAGTTTCCCCCTAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTGCCAGTGGGTTTGGGTGAAGGAGGTGAGTTTCCCCCTAGGAA  500

seq1  GGCAGCTGGTTGCTGTGGTGCCACTTTGTACGTAGGACAGATTAGGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGGTTGCTGTGGTGCCACTTTGTACGTAGGACAGATTAGGATGT  550

seq1  GACCCCGCTGTCGGTCGGGGTTATGTGTTAGGGCAGCAGACAGCCTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCGCTGTCGGTCGGGGTTATGTGTTAGGGCAGCAGACAGCCTGGAG  600

seq1  CCTCTCTGTCACGGTGGCTTCACTCGCAGTTCTGATACTGGCACAGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGTCACGGTGGCTTCACTCGCAGTTCTGATACTGGCACAGTACA  650

seq1  GTCGCTTGCTCTGGAAAGCCCAGAGAGAACCCTGCTTCAGGGCTACAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCTTGCTCTGGAAAGCCCAGAGAGAACCCTGCTTCAGGGCTACAGTG  700

seq1  GAGAGGCCAGGGCCTCGTCTCCACTGCTCCTGGAACACGGGCTTTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCAGGGCCTCGTCTCCACTGCTCCTGGAACACGGGCTTTGTTTT  750

seq1  GGCTCCTTCACTGTGAACCTAGCTGTCGTGCTAAAGGTCTGTATGGCCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTCACTGTGAACCTAGCTGTCGTGCTAAAGGTCTGTATGGCCGT  800

seq1  GCTCAGAGCCACGTCTGAAAGGACAAAGCTGACGTGGCTCAACATATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGCCACGTCTGAAAGGACAAAGCTGACGTGGCTCAACATATGTT  850

seq1  TTGACTCTGGTCTTTGCGCCACTTCTGCAAAGAGACCAAGCAGTGGCCAT  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGACTCTGGTCTTTGCGCCACTTCTGC-AAGAGACCAAGCAGTGGCCAT  899

seq1  CGTTCAAGGTTCCTGGCTGGCGCTTTGAGTCTAGGTGCAAACACTGCATC  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAA-GTTCCTGGCTGGCGCTTTGAGTCTAGGTGCAAACACTGCATC  948

seq1  CCCTTCACCACGTTGCACAATCGGGAATATTTTTATCATCTATCCTTGAT  1000
      ||||||| ||||||||||||||||||||||||||||||||||| | ||||
seq2  CCCTTCA-CACGTTGCACAATCGGGAATATTTTTATCATCTATTC-TGAT  996

seq1  CTTCGGTGTCACCCAACACTTCAGCAGTGAGTCATTTCTGCAGGGAAGGG  1050
      |||| ||||||| | ||||||||||||||||||||||||||| |||||| 
seq2  CTTC-GTGTCACTC-ACACTTCAGCAGTGAGTCATTTCTGCA-GGAAGG-  1042

seq1  AAAGGGAAGGTTCAAAGGTGACAGCTGAAGAAAGGAAATGACTCAGTGTC  1100
       || |||| ||||||  || ||||||| ||||  ||||||||||||||||
seq2  -AAAGGAAAGTTCAAGTGT-ACAGCTG-AGAA--GAAATGACTCAGTGTC  1087

seq1  TCAGAGAAAGGAAAGCTTGGGGCAGAGTGGGCTCTCACCCGAGACTA  1147
      ||  || |||  |||||  ||||| ||| |||||||||||| |||||
seq2  TCTCAGGAAG--AAGCT--GGGCA-AGT-GGCTCTCACCCG-GACTA  1127