BAC Information

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BAC

Clone NameB6Ng01-087F18
Chromosome19 (Build37)
Map Location 16,918,711 - 17,041,193
singlet/doubletdoublet
Overlap geneFoxb2, A230083H22Rik
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087F18.bB6Ng01-087F18.g
ACCDH900506DH900507
length1,1471,210
definitionDH900506|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F18, 5' end.DH900507|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,040,028 - 17,041,193)(16,918,711 - 16,919,785)
sequence
gaattcaataagagccagctaagacgctgcccttttcgctataggcctct
agccaccaacaaggaaaggccagcaaggtttctctggtagccaaggagag
atagaagatgtttcttcaattggggtaggaagccaatccaatctacctta
ctacaagccaggcaagattgaaattcagaaaatagagagttgagagactg
agggtggcattggctaggaaagggcttaatcgggccctgagctggacctc
cagcacagaagacaaaactcagtagacaatgatgttcagacagtgacccc
tagcctctgaagagaagggcccagggaactgctatcctgggagcagccag
gtgtgtgtgttgtcctcttggatatgcccataggctatcagcagctggac
tgaattgaccatctgcctttctgcattcttagagccaggtgctggcctgg
ccagatgaccatgtctgtgaaaacatgcctgaagaaggcagagaatgtat
ggtttggacgggtttctgtttctgccctttatgggggaaaaggcaggaag
tccaacatgaacatttctctatatgcaaaagtcattcattaatttatata
agaaatgttttcacagggaaaatctgggctttattaaatgaataggcttc
cttttaaagaaggtgggttcttataagtcttgatttttcaactaaagaaa
aatgtgattcctaaatagggctccttcataaaaaccctcccaaatatttg
acagactggcaagagtttgccctgcatccttctaaggctttgcctgaagg
ccgtttcatgcacacggtcttggctatgttctcctggagtccagaatcaa
gtgaattattgcttcaaggtgggagttggggtgaatactcacatctcagc
atgccaaggactcatgcctccccacagctcatatttatagtaccattacc
ctccgcactaactcatgatcactgtgataaatacatttcacacactactg
cttgactcatgagcctcacggacagcaaagctcatctcatgcgactgctt
cttctttttctctctagtctctataaattatttttctgaaatgctcatac
atcataactttctcttaatcataacttaagatacagaatctttcccc
gaattcagtaagaatgttaactattcagcaacactcaaatttacttctag
tagagacagtaaaaataatcaggcattacaatttacttgaatagagctag
aaagctcagggctagtctgcatagtaattacttaggacaatagctgagtc
acacccaaacccaggaacccacaataggtgggttatagtattattcatga
aagggttagtagaacggaattcccctggtgcaggtttttcacaaggccca
gaggaatagcgtaatcaggtatttactaaaggacccctggtggtgggttt
agcaatagactagcattgtatctgagcattcacctggctcctccttagct
gatcttaattaagggttgttcctattctcagttgtaaacaaggcctggct
cccaccatctttttatatatgcattttcattgttttgtgttaagaaccag
tgtaccttgacggatgtattcacctagctttcttgtttttcttctgtaat
ataagactggtgcttgctttgtgaaaatacatccaggtacagcactccct
tgcgtttgtatttgtttgtcattcctcaactccttgctcacctgtaacca
gaaccctgttccctgcagattggagacccaattgaggttcatctgcagca
gtgataaaagccaatcatccatctgttgaatgaaatgtgtctttatttct
attttcaaaggcacttaagaaaggtggcctatccagtgtttgtaaactca
tgcaaataagtgactcatactgtgagcaatttatttttcagcatggctgc
cagacactagaaattggtaacataatcttgcctctgaaaaatacatggcc
cattctgtggactgtcactattaagagagtttcagttttagctccaaact
gttttctcttttggatgaatctgtcaagtgcaaccagacttacaaaattc
ctatctgtatctttacttctctgctcctgcagcataatctgagactcact
ctggcttgacttcaatcatctatggtctcagtaggagcctgtgttcatca
gcagtcctgtagaactgtagaactcatgctctcacgcctttgcttccggt
cttgacatggtctttgccatcagtggggagcaaagggaggaatctatatc
acagaatccttgttcattgcataagttaaggaaccgctctgtaaatataa
aacttgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17040028_17041193
seq2: B6Ng01-087F18.b_43_1189 (reverse)

seq1  GGGGAAAGA-TCTGTAATCTTAGTGTATGATTTAAGAGGAAAGTTATGAT  49
      ||||||||| ||||| ||||||   ||||| |||||| ||||||||||||
seq2  GGGGAAAGATTCTGT-ATCTTAAGTTATGA-TTAAGA-GAAAGTTATGAT  47

seq1  GTATGAGCAATTTCAGAAAAATAATTTTTATTAAGAGGACTAAGAGAGAA  99
      |||||||| |||||||||||||||||| |    ||| |||| ||||||||
seq2  GTATGAGC-ATTTCAGAAAAATAATTTAT----AGA-GACT-AGAGAGAA  90

seq1  AAAGGAAGAAGCAGTCGCATGGAGAATGAGCTTTTGCTGTCCGGTGAGGC  149
      ||| |||||||||||||||| ||| |||||| |||||||||| |||||| 
seq2  AAA-GAAGAAGCAGTCGCAT-GAG-ATGAGC-TTTGCTGTCC-GTGAGG-  134

seq1  CTCATGAGTCAAGCAGGTAGGTGTGTGAAATGTATTTATCACAAGTGATC  199
      ||||||||||||||| ||| |||||||||||||||||||||| |||||||
seq2  CTCATGAGTCAAGCA-GTA-GTGTGTGAAATGTATTTATCAC-AGTGATC  181

seq1  ATGAGTTAGTGCGGAGGGTAATGGTACTATAAATATGAGCTGTGGGGAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTAGTGCGGAGGGTAATGGTACTATAAATATGAGCTGTGGGGAGG  231

seq1  CATGAGTCCTTGGCATGCCTGAGATGTGAGTATTCACCCCAACTCCCACC  299
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATGAGTCCTTGGCATG-CTGAGATGTGAGTATTCACCCCAACTCCCACC  280

seq1  TTGAAGCAATAATTCACTTGATTCTGGACTCCAGGAGAACATAGCCAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCAATAATTCACTTGATTCTGGACTCCAGGAGAACATAGCCAAGA  330

seq1  CCGTGTGCATGAAACGGCCTTCAGGCAAAGCCTTAGAAGGATGCAGGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTGCATGAAACGGCCTTCAGGCAAAGCCTTAGAAGGATGCAGGGCA  380

seq1  AACTCTTGCCAGTCTGTCAAATATTTGGGAGGGTTTTTATGAAGGAGCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGCCAGTCTGTCAAATATTTGGGAGGGTTTTTATGAAGGAGCCC  430

seq1  TATTTAGGAATCACATTTTTCTTTAGTTGAAAAATCAAGACTTATAAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGAATCACATTTTTCTTTAGTTGAAAAATCAAGACTTATAAGAA  480

seq1  CCCACCTTCTTTAAAAGGAAGCCTATTCATTTAATAAAGCCCAGATTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTCTTTAAAAGGAAGCCTATTCATTTAATAAAGCCCAGATTTTC  530

seq1  CCTGTGAAAACATTTCTTATATAAATTAATGAATGACTTTTGCATATAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAAAACATTTCTTATATAAATTAATGAATGACTTTTGCATATAGA  580

seq1  GAAATGTTCATGTTGGACTTCCTGCCTTTTCCCCCATAAAGGGCAGAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTCATGTTGGACTTCCTGCCTTTTCCCCCATAAAGGGCAGAAAC  630

seq1  AGAAACCCGTCCAAACCATACATTCTCTGCCTTCTTCAGGCATGTTTTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCGTCCAAACCATACATTCTCTGCCTTCTTCAGGCATGTTTTCA  680

seq1  CAGACATGGTCATCTGGCCAGGCCAGCACCTGGCTCTAAGAATGCAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGGTCATCTGGCCAGGCCAGCACCTGGCTCTAAGAATGCAGAAA  730

seq1  GGCAGATGGTCAATTCAGTCCAGCTGCTGATAGCCTATGGGCATATCCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGGTCAATTCAGTCCAGCTGCTGATAGCCTATGGGCATATCCAA  780

seq1  GAGGACAACACACACACCTGGCTGCTCCCAGGATAGCAGTTCCCTGGGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAACACACACACCTGGCTGCTCCCAGGATAGCAGTTCCCTGGGCC  830

seq1  CTTCTCTTCAGAGGCTAGGGGTCACTGTCTGAACATCATTGTCTACTGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTCAGAGGCTAGGGGTCACTGTCTGAACATCATTGTCTACTGAG  880

seq1  TTTTGTCTTCTGTGCTGGAGGTCCAGCTCAGGGCCCGATTAAGCCCTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTCTGTGCTGGAGGTCCAGCTCAGGGCCCGATTAAGCCCTTTC  930

seq1  CTAGCCAATGCCACCCTCAGTCTCTCAACTCTCTATTTTCTGAATTTCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAATGCCACCCTCAGTCTCTCAACTCTCTATTTTCTGAATTTCAA  980

seq1  TCTTGCCTGGCTTGTAGTAAGGTAGATTGGATTGGCTTCCTACCCCAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTGGCTTGTAGTAAGGTAGATTGGATTGGCTTCCTACCCCAATT  1030

seq1  GAAGAAACATCTTCTATCTCTCCTTGGCTACCAGAGAAACCTTGCTGGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACATCTTCTATCTCTCCTTGGCTACCAGAGAAACCTTGCTGGCC  1080

seq1  TTTCCTTGTTGGTGGCTAGAGGCCTATAGCGAAAAGGGCAGCGTCTTAGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTTGGTGGCTAGAGGCCTATAGCGAAAAGGGCAGCGTCTTAGC  1130

seq1  TGGCTCTTATTGAATTC  1166
      |||||||||||||||||
seq2  TGGCTCTTATTGAATTC  1147

seq1: chr19_16918711_16919785
seq2: B6Ng01-087F18.g_219_1278

seq1  ACACCCAAACCCAGGAACCCACAATAGGTGGGTTATAGTATTATTCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAACCCAGGAACCCACAATAGGTGGGTTATAGTATTATTCATGA  50

seq1  AAGGGTTAGTAGAACGGAATTCCCCTGGTGCAGGTTTTTCACAAGGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTAGTAGAACGGAATTCCCCTGGTGCAGGTTTTTCACAAGGCCCA  100

seq1  GAGGAATAGCGTAATCAGGTATTTACTAAAGGACCCCTGGTGGTGGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATAGCGTAATCAGGTATTTACTAAAGGACCCCTGGTGGTGGGTTT  150

seq1  AGCAATAGACTAGCATTGTATCTGAGCATTCACCTGGCTCCTCCTTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGACTAGCATTGTATCTGAGCATTCACCTGGCTCCTCCTTAGCT  200

seq1  GATCTTAATTAAGGGTTGTTCCTATTCTCAGTTGTAAACAAGGCCTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAATTAAGGGTTGTTCCTATTCTCAGTTGTAAACAAGGCCTGGCT  250

seq1  CCCACCATCTTTTTATATATGCATTTTCATTGTTTTGTGTTAAGAACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATCTTTTTATATATGCATTTTCATTGTTTTGTGTTAAGAACCAG  300

seq1  TGTACCTTGACGGATGTATTCACCTAGCTTTCTTGTTTTTCTTCTGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTGACGGATGTATTCACCTAGCTTTCTTGTTTTTCTTCTGTAAT  350

seq1  ATAAGACTGGTGCTTGCTTTGTGAAAATACATCCAGGTACAGCACTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTGGTGCTTGCTTTGTGAAAATACATCCAGGTACAGCACTCCCT  400

seq1  TGCGTTTGTATTTGTTTGTCATTCCTCAACTCCTTGCTCACCTGTAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTTGTATTTGTTTGTCATTCCTCAACTCCTTGCTCACCTGTAACCA  450

seq1  GAACCCTGTTCCCTGCAGATTGGAGACCCAATTGAGGTTCATCTGCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGTTCCCTGCAGATTGGAGACCCAATTGAGGTTCATCTGCAGCA  500

seq1  GTGATAAAAGCCAATCATCCATCTGTTGAATGAAATGTGTCTTTATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAAAGCCAATCATCCATCTGTTGAATGAAATGTGTCTTTATTTCT  550

seq1  ATTTTCAAAGGCACTTAAGAAAGGTGGCCTATCCAGTGTTTGTAAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAAGGCACTTAAGAAAGGTGGCCTATCCAGTGTTTGTAAACTCA  600

seq1  TGCAAATAAGTGACTCATACTGTGAGCAATTTATTTTTCAGCATGGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATAAGTGACTCATACTGTGAGCAATTTATTTTTCAGCATGGCTGC  650

seq1  CAGACACTAGAAATTGGTAACATAATCTTGCCTCTGAAAAATACATGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTAGAAATTGGTAACATAATCTTGCCTCTGAAAAATACATGGCC  700

seq1  CATTCTGTGGACTGTCACTATTAAGAGAGTTTCAGTTTTTAGCTCCAAAC  750
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATTCTGTGGACTGTCACTATTAAGAGAGTTTCAG-TTTTAGCTCCAAAC  749

seq1  TGTTTTCTCTTTTGGATGAATCTGTCAAGTGCAACCAGACTTACAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCTTTTGGATGAATCTGTCAAGTGCAACCAGACTTACAAAATT  799

seq1  CCTATCTTGTTATCTTTACTTCTCTGCTCCTGCAAGCATAATCTGAGACT  850
      |||||||   ||||||||||||||||||||||| ||||||||||||||||
seq2  CCTATCT--GTATCTTTACTTCTCTGCTCCTGC-AGCATAATCTGAGACT  846

seq1  CACTCTGGCTTGACTTCCAATCATCTTATGGTCTCAAGTAGGAGCCTGGT  900
      |||||||||||||||| |||||||| ||||||||| ||||||||||| ||
seq2  CACTCTGGCTTGACTT-CAATCATC-TATGGTCTC-AGTAGGAGCCT-GT  892

seq1  GTTCATCAGCAGTCCTGTTAGGAACTGTAGCACTCATGCTCTCACGCTAT  950
      ||||||||||||||||||   ||||||||| ||||||||||||||||  |
seq2  GTTCATCAGCAGTCCTGT--AGAACTGTAGAACTCATGCTCTCACGCCTT  940

seq1  TGCTTCCGGGTCTGGCACATGGTCTTTGCCCATCAGT-GGGAGCAACAGG  999
      ||||||| ||||| | |||||||||||| |||||||| ||||||||  ||
seq2  TGCTTCC-GGTCTTG-ACATGGTCTTTG-CCATCAGTGGGGAGCAAAGGG  987

seq1  AGATGTATCTATCAC-GAATCC-TGTCCATTGCCCAAATAAGTAAGGAGA  1047
      ||   | | |||||| |||||| ||| ||||||    |||||| | | ||
seq2  AGGAATCTATATCACAGAATCCTTGTTCATTGC----ATAAGTTAAG-GA  1032

seq1  ACAGCTCTG-AAATATAAAAACTTGGGGA  1075
      || |||||| |||||| ||||||||||||
seq2  ACCGCTCTGTAAATAT-AAAACTTGGGGA  1060