BAC Information

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BAC

Clone NameB6Ng01-087G18
Chromosome19 (Build37)
Map Location 52,678,499 - 52,835,188
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
Downstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087G18.bB6Ng01-087G18.g
ACCDH900552DH900553
length1,1771,052
definitionDH900552|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G18, 5' end.DH900553|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,833,996 - 52,835,188)(52,678,499 - 52,679,551)
sequence
gaattccaaaggagaagcaattgaacaagtggaaggagaatctgagtgct
gaagtcttcactgtattgctactcttgacttcaagaaaacagaaaggaag
acaacgatttcagtacaagaaataggcaacttcaatcaatatagataagc
cagagtgcaaaaggcaactcctgttgcataccaagtgtatgatgttgtgc
tttctaggtcatcacaggcaatcttggaaacagtgttataaatgaggcat
tcttgttttgtcaatattgcatattatcaattcacagatgaatacacaaa
atcaaagaatgatgactttatataaagacatacagcttagaagctgaaaa
gccatggtttgaatgcccatcagccagacatagatatgctaactcctcta
gggagcttaggtaagaatccttatccagttcagactggttcctgtttaga
ggcactgaagaaaactatttcaaaaaaacaacaaaatttacaatagagca
atggagaatggggtaagagataagtgagaaataagatcttagagtaaaat
tctgacagccactgtgctggctagattttcttttttctcttttcttaact
ctacacagctagagttatctgagaggagggaacctctaaatcaaccaagc
aaagcatctgtggactcacagggatggaagcagcaagtgcagggcctacc
caggtctagaccacaccctctgcatacctaccatacctttcagcttagta
ctttcatgggacccctgagtgtgtaaacaagtgggtctctggttcttgtg
ccttctctcctggggctctttcccttctgctggtttgccagatccaactt
agatgtgatggtttttgttttgtcttattatattttattttgttgttaca
aaagaatggaaaaaattaaaacctggaagaagaaaaaagaaacatgcctt
gagaagattggactggtgaaagggagcaagaggggaaggagctgtgggag
gggagcctggagagaaggggcttggataattaaagtgaacaaattaaata
cctttaaacacaccacacacaacacaacaacaacacacacacataatatt
atattgattggctataggcagcctgaaagtcattctcttaattgggaatg
gtttgaaggtccagaaccttgtgggtg
gaattcttttgatgtgaaatatgatcatggttattaaattcatttccaaa
tgcgaccacattcttgccaagtcataagtgtgtcgttcttaaccagaaga
accaacctgatgatgttctcgggcgcctacattgaaacatttcattttat
ccactgaattctgaggtgagagatgctttttctatgtctgcctgggtctc
atactgattttcatagaagcttcaatgtgaccttagtaaccaaccaattg
tgaaagactcgggcaagaacaaagagaaatagacattaaaaaaaaaatct
tcccagaaaagctggtcctgataggtggtctatcagaagcccaacagtac
ctacacagttactttcattgaggagaagaggagaagcatccacagtagca
tccacaaagatctgtggcttaagccatgtgaaactccctccctcctgatt
acaagaatcacagttgcaatgagtcctcagctcatttatctattctgggt
tggaaacggctccacccatcaaagccaagtcatgataggtaaaggctttg
gacaagatgttgatgctgtcagaatatgagtcacagaacttgagagactt
ttaaaaacacaaaccacagggccatggcttaaatatgagaaaggggggta
ttgatttcagggcaaacagacactaggatactggagttgggggtggggca
gagactgacataggaattcataatctagattaaacctatgtaagagcagc
tagtatgctaaacaactgggcaatctctccagccactatcagtaggaact
tctatactcaagttcttgtaggaatagtaaaataaagctaattcaatatg
gcaattgatttaaaacccttaccggtacctgtcacatcatgatacctagt
gcctgctaatcattgttaatctgactattttactccagtatcataaatga
tagccctctaatgttactgaatccatcactatcttcttttgaaagccttt
cctcccaatattatatctaactatggaaatcattatttgggggggggggg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_52833996_52835188
seq2: B6Ng01-087G18.b_41_1217 (reverse)

seq1  CACCCACAAAGTTCTGGGACCTTCCAAACAATCACCAATTAAGAGAATGG  50
      ||||||||| ||||| ||||||| ||||| ||  ||||||||||||||| 
seq2  CACCCACAAGGTTCT-GGACCTT-CAAACCATTCCCAATTAAGAGAATGA  48

seq1  ACTTCAGGCTTGCCTATAGCCCAATCATATTATTATTATTGTTGTTGTTG  100
        ||||||| ||||||||| |||||||   || ||||||         ||
seq2  CTTTCAGGC-TGCCTATAG-CCAATCAATATAATATTAT--------GTG  88

seq1  TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTAATGTATTT-ATT  149
      |   ||||||||||| ||||||   || || ||||| || |||||| |||
seq2  TGTGTGTTGTTGTTG-TGTTGTGTGTGGTG-TGTTTAAAGGTATTTAATT  136

seq1  TGTTCACTTTATATATCCAGCCCCCTTCTCCTCCCAGGCTCCCCTCCCAC  199
      |||||||||||  ||||||  |||||||||   |||||||||||||||||
seq2  TGTTCACTTTAATTATCCAAGCCCCTTCTC--TCCAGGCTCCCCTCCCAC  184

seq1  AGCTCCTTCCCCTCTTGCTCCC-TTCACCAGTCCAATCTTCTCAAGGCAT  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCTCCTTCCCCTCTTGCTCCCTTTCACCAGTCCAATCTTCTCAAGGCAT  234

seq1  GTTTCTTTTTTTCTTCTTCCAGGTTTTAATTTTTTCCATTCTTTTTGTAA  298
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTTC-TTTTTTCTTCTTCCAGGTTTTAATTTTTTCCATTC-TTTTGTAA  282

seq1  CAACAAAATAAAATATAATAAGACAAAACAAAAACCATCACATCTAAGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAATAAAATATAATAAGACAAAACAAAAACCATCACATCTAAGTT  332

seq1  GGATCTGGCAAACCAGCAGAAGGGAAAGAGCCCCAGGAGAGAAGGCACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGGCAAACCAGCAGAAGGGAAAGAGCCCCAGGAGAGAAGGCACAA  382

seq1  GAACCAGAGACCCACTTGTTTACACACTCAGGGGTCCCATGAAAGTACTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAGACCCACTTGTTTACACACTCAGGGGTCCCATGAAAGTACTA  432

seq1  AGCTGAAAGGTATGGTAGGTATGCAGAGGGTGTGGTCTAGACCTGGGTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAGGTATGGTAGGTATGCAGAGGGTGTGGTCTAGACCTGGGTAG  482

seq1  GCCCTGCACTTGCTGCTTCCATCCCTGTGAGTCCACAGATGCTTTGCTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCACTTGCTGCTTCCATCCCTGTGAGTCCACAGATGCTTTGCTTG  532

seq1  GTTGATTTAGAGGTTCCCTCCTCTCAGATAACTCTAGCTGTGTAGAGTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTAGAGGTTCCCTCCTCTCAGATAACTCTAGCTGTGTAGAGTTA  582

seq1  AGAAAAGAGAAAAAAGAAAATCTAGCCAGCACAGTGGCTGTCAGAATTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGAAAAAAGAAAATCTAGCCAGCACAGTGGCTGTCAGAATTTT  632

seq1  ACTCTAAGATCTTATTTCTCACTTATCTCTTACCCCATTCTCCATTGCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAGATCTTATTTCTCACTTATCTCTTACCCCATTCTCCATTGCTC  682

seq1  TATTGTAAATTTTGTTGTTTTTTTGAAATAGTTTTCTTCAGTGCCTCTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAAATTTTGTTGTTTTTTTGAAATAGTTTTCTTCAGTGCCTCTAA  732

seq1  ACAGGAACCAGTCTGAACTGGATAAGGATTCTTACCTAAGCTCCCTAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACCAGTCTGAACTGGATAAGGATTCTTACCTAAGCTCCCTAGAG  782

seq1  GAGTTAGCATATCTATGTCTGGCTGATGGGCATTCAAACCATGGCTTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGCATATCTATGTCTGGCTGATGGGCATTCAAACCATGGCTTTTC  832

seq1  AGCTTCTAAGCTGTATGTCTTTATATAAAGTCATCATTCTTTGATTTTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTAAGCTGTATGTCTTTATATAAAGTCATCATTCTTTGATTTTGT  882

seq1  GTATTCATCTGTGAATTGATAATATGCAATATTGACAAAACAAGAATGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATCTGTGAATTGATAATATGCAATATTGACAAAACAAGAATGCC  932

seq1  TCATTTATAACACTGTTTCCAAGATTGCCTGTGATGACCTAGAAAGCACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATAACACTGTTTCCAAGATTGCCTGTGATGACCTAGAAAGCACA  982

seq1  ACATCATACACTTGGTATGCAACAGGAGTTGCCTTTTGCACTCTGGCTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATACACTTGGTATGCAACAGGAGTTGCCTTTTGCACTCTGGCTTA  1032

seq1  TCTATATTGATTGAAGTTGCCTATTTCTTGTACTGAAATCGTTGTCTTCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTGATTGAAGTTGCCTATTTCTTGTACTGAAATCGTTGTCTTCC  1082

seq1  TTTCTGTTTTCTTGAAGTCAAGAGTAGCAATACAGTGAAGACTTCAGCAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTTCTTGAAGTCAAGAGTAGCAATACAGTGAAGACTTCAGCAC  1132

seq1  TCAGATTCTCCTTCCACTTGTTCAATTGCTTCTCCTTTGGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCTCCTTCCACTTGTTCAATTGCTTCTCCTTTGGAATTC  1177

seq1: chr19_52678499_52679551
seq2: B6Ng01-087G18.g_67_1117

seq1  GAATTCTTTTGATGTGAAATATGATCATGGTTATTAAATTCATTTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGATGTGAAATATGATCATGGTTATTAAATTCATTTCCAAA  50

seq1  TGCGACCACATTCTTGCCAAGTCATAAGTGTGTCGTTCTTAACCAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACCACATTCTTGCCAAGTCATAAGTGTGTCGTTCTTAACCAGAAGA  100

seq1  ACCAACCTGATGATGTTCTCGGGCGCCTACATTGAAACATTTCATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCTGATGATGTTCTCGGGCGCCTACATTGAAACATTTCATTTTAT  150

seq1  CCACTGAATTCTGAGGTGAGAGATGCTTTTTCTATGTCTGCCTGGGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAATTCTGAGGTGAGAGATGCTTTTTCTATGTCTGCCTGGGTCTC  200

seq1  ATACTGATTTTCATAGAAGCTTCAATGTGACCTTAGTAACCAACCAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATTTTCATAGAAGCTTCAATGTGACCTTAGTAACCAACCAATTG  250

seq1  TGAAAGACTCGGGCAAGAACAAAGAGAAATAGACATTAAAAAAAAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACTCGGGCAAGAACAAAGAGAAATAGACATTAAAAAAAAAATCT  300

seq1  TCCCAGAAAAGCTGGTCCTGATAGGTGGTCTATCAGAAGCCCAACAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAAAGCTGGTCCTGATAGGTGGTCTATCAGAAGCCCAACAGTAC  350

seq1  CTACACAGTTACTTTCATTGAGGAGAAGAGGAGAAGCATCCACAGTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGTTACTTTCATTGAGGAGAAGAGGAGAAGCATCCACAGTAGCA  400

seq1  TCCACAAAGATCTGTGGCTTAAGCCATGTGAAACTCCCTCCCTCCTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAGATCTGTGGCTTAAGCCATGTGAAACTCCCTCCCTCCTGATT  450

seq1  ACAAGAATCACAGTTGCAATGAGTCCTCAGCTCATTTATCTATTCTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATCACAGTTGCAATGAGTCCTCAGCTCATTTATCTATTCTGGGT  500

seq1  TGGAAACGGCTCCACCCATCAAAGCCAAGTCATGATAGGTAAAGGCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACGGCTCCACCCATCAAAGCCAAGTCATGATAGGTAAAGGCTTTG  550

seq1  GACAAGATGTTGATGCTGTCAGAATATGAGTCACAGAACTTGAGAGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGATGTTGATGCTGTCAGAATATGAGTCACAGAACTTGAGAGACTT  600

seq1  TTAAAAACACAAACCACAGGGCCATGGCTTAAATATGAGAAAGGGGGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACACAAACCACAGGGCCATGGCTTAAATATGAGAAAGGGGGGTA  650

seq1  TTGATTTCAGGGCAAACAGACACTAGGATACTGGAGTTGGGGGTGGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCAGGGCAAACAGACACTAGGATACTGGAGTTGGGGGTGGGGCA  700

seq1  GAGACTGACATAGGAATTCATAATCTAGATTAAACCTATGTAAGAGCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGACATAGGAATTCATAATCTAGATTAAACCTATGTAAGAGCAGC  750

seq1  TAGTATGCTAAACAACTGGGCAATCTCTCCAGCCACTATCAGTAGGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGCTAAACAACTGGGCAATCTCTCCAGCCACTATCAGTAGGAACT  800

seq1  TCTATACTCAAGTTCTTGTAGGAATAGTAAAATAAAGCTAATTCAATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACTCAAGTTCTTGTAGGAATAGTAAAATAAAGCTAATTCAATATG  850

seq1  GCAATTGATTTAAAACCCTTACCGGTACCTGTCACATCATGATACCTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGATTTAAAACCCTTACCGGTACCTGTCACATCATGATACCTAGT  900

seq1  GCCTGCTAATCATTGTTAATCTGACTATTTTACTCCAGTATCATAAAATG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCTGCTAATCATTGTTAATCTGACTATTTTACTCCAGTATCAT-AAATG  949

seq1  ATAGCCCTCTAATGTTACTGAATCCATCACTATCTTCTTTTGAAAGCC-T  999
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATAGCCCTCTAATGTTACTGAATCCATCACTATCTTCTTTTGAAAGCCTT  999

seq1  TCCTCCCAAATATTATATCTAACTATGGAAAATCATTAATTGGGGGGGGG  1049
      ||||||| |||||||||||||||||||| ||||||||| |||||||||||
seq2  TCCTCCC-AATATTATATCTAACTATGG-AAATCATTATTTGGGGGGGGG  1047

seq1  GGGG  1053
      ||||
seq2  GGGG  1051