BAC Information

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BAC

Clone NameB6Ng01-088D21
Chromosome19 (Build37)
Map Location 58,496,015 - 58,497,181
singlet/doubletsinglet
Overlap geneGfra1
Upstream geneTrub1, LOC100043038, Atrnl1
Downstream geneLOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088D21.bB6Ng01-088D21.g
ACCDH901152DH901153
length1,2331,160
definitionDH901152|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D21, 5' end.DH901153|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtaagaatgttgcctattcagtgacattcagaattgcctctgg
tattacactatcactttgaataaaagctaagtcactgccctacacaggaa
tttaccatcatctaggaagaaggaagtttgagacctaaggaggaatcaga
gtagatacttagaactatagataactgagttacacccatacacacgtatt
tacaatggcctagggggaaggtggactatacaatagactaaaataggaac
tatggcaagggcacgaagcccttgaccctggcttctaagattaagtgaac
tttaggtggagctctttttgatcccagttgttatcaatgaattctatccc
aggtggttcctgttagaccttctgtgtttgtagtcctctgttttgaatcc
agtaacctctttgtaccttgtgggtgtgtcaccaaacttccctattttct
tctgtataaaaagtttgatgctccatttgacacattacattcagattcta
cacaacctctcctgtgcgcatctgtttgtcattccatccaacgctttgcc
cacctgcgactagagacctgttccacgcagacaaaggggcccagagggtc
tgcggcacactttgccttgaaggtcacttcctaattccctttgcctgcaa
gcactctctcacctgaagttataacaaagcagtttgctcaattgttcaac
aactaccaatcacttactgctggctcccccccttcccctgtggagagata
ctttgctcattcacttgttcacaatagccaaaacagggagagggtccaga
cgcccatcatcagagggatggataaagacgaggcagtattcatgcacaat
ggagttttattcagtcttaatgaggtacaggctgaagagttagagttacc
ctcagctacatgtaactttggaacaccctggggttatgtgagcccacccc
ccttaaaaaaaagtaaaataaaatgtatgggcttgaaatggatggatcag
agatcatgtaagtgagaaacaggagtcagaaggcaatctcatgaggatct
gattttttttttaatgtctaagcgtatatgcatggtgtgtctaaccattg
tgcggggtggtgatgacgcagccatcttgagagaacctgaaaggctatgc
ccatgataccacgtgtaagtccagaagtcctgtatgctactgagatccgg
cgaggtgtatcttgtaagtccttttggcaccta
gaattcctttcaggactttctaaatgctaatttagcttgtcatacattta
gaatgaaattctttgcaaaatgtagtttcccaagccaccataataattaa
agtgattatttatcttgagatagacaagtatcatccccaacaaaaggagg
ttgctgctcttcattaaaagataatttatacttcagattcattttttaag
tgtagcaataacaacagaagccttaagctgatagcaagtcccccaggatt
taccaaactttttgaagagttcactccgagcaaatgtatgaacgtttttg
aatgtgttacacaatagagccctgtttgatatctccccagtgcagcggtt
gagggtctctggatagtaaggtcactatgtggtctgcagagtttagtggg
gcccaaagaactgtagccttcatagatggatagaaaagagcaacaagcaa
gtggccttgccgtttcccacggagtgatataaaacatggggaggatctgt
ctgcttgtgttctgtttctgtctgtccatcaggccaccaagaaaatctaa
gcgactgagtttctcaaagcagctggtttactcttaagtctccagaacaa
aacccttactgtttccccccctcccccgacaccgacctgaggtgcttgcc
tcttgtgcccaccgtggtgagagagctgccccactgctccccactgttcc
catgcccacatcacacggagttccccgtcttcacccttcctgacgcccgg
agtgcctagccctctcacacagggaaaacgaagacaggagcattggcagc
aatgaatattgtctttcccagaccaccacaaaaacatgcctacaaagagg
cgttttctagggatgatgatctccccggagacttcaattcccaccaggtt
cccgagaccaagcgccgtgaagagcaatgagggctagagagatgactcca
tcagcgggtaaagtgcttgcacacataaagctgtggaggtctttacccag
tatagacaaatgcagctctgggttcagtgaagagacgctgtctcaaaaag
taaagtgaaaaaggtagaagaaagataaacggaagtggactggacacaca
catacaggcagtgcatgcacaaacactggtgttatacatgcatgcatgct
gaccgagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58496015_58497181
seq2: B6Ng01-088D21.g_68_1227

seq1  GAATTCCTTTCAGGACTTTCTAAATGCTAATTTAGCTTGTCATACATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCAGGACTTTCTAAATGCTAATTTAGCTTGTCATACATTTA  50

seq1  GAATGAAATTCTTTGCAAAATGTAGTTTCCCAAGCCACCATAATAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAATTCTTTGCAAAATGTAGTTTCCCAAGCCACCATAATAATTAA  100

seq1  AGTGATTATTTATCTTGAGATAGACAAGTATCATCCCCAACAAAAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTATTTATCTTGAGATAGACAAGTATCATCCCCAACAAAAGGAGG  150

seq1  TTGCTGCTCTTCATTAAAAGATAATTTATACTTCAGATTCATTTTTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTCTTCATTAAAAGATAATTTATACTTCAGATTCATTTTTTAAG  200

seq1  TGTAGCAATAACAACAGAAGCCTTAAGCTGATAGCAAGTCCCCCAGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAATAACAACAGAAGCCTTAAGCTGATAGCAAGTCCCCCAGGATT  250

seq1  TACCAAACTTTTTGAAGAGTTCACTCCGAGCAAATGTATGAACGTTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAACTTTTTGAAGAGTTCACTCCGAGCAAATGTATGAACGTTTTTG  300

seq1  AATGTGTTACACAATAGAGCCCTGTTTGATATCTCCCCAGTGCAGCGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTACACAATAGAGCCCTGTTTGATATCTCCCCAGTGCAGCGGTT  350

seq1  GAGGGTCTCTGGATAGTAAGGTCACTATGTGGTCTGCAGAGTTTAGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCTCTGGATAGTAAGGTCACTATGTGGTCTGCAGAGTTTAGTGGG  400

seq1  GCCCAAAGAACTGTAGCCTTCATAGATGGATAGAAAAGAGCAACAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAGAACTGTAGCCTTCATAGATGGATAGAAAAGAGCAACAAGCAA  450

seq1  GTGGCCTTGCCGTTTCCCACGGAGTGATATAAAACATGGGGAGGATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTGCCGTTTCCCACGGAGTGATATAAAACATGGGGAGGATCTGT  500

seq1  CTGCTTGTGTTCTGTTTCTGTCTGTCCATCAGGCCACCAAGAAAATCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGTGTTCTGTTTCTGTCTGTCCATCAGGCCACCAAGAAAATCTAA  550

seq1  GCGACTGAGTTTCTCAAAGCAGCTGGTTTACTCTTAAGTCTCCAGAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTGAGTTTCTCAAAGCAGCTGGTTTACTCTTAAGTCTCCAGAACAA  600

seq1  AACCCTTACTGTTTCCCCCCCTCCCCCGACACCGACCTGAGGTGCTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTACTGTTTCCCCCCCTCCCCCGACACCGACCTGAGGTGCTTGCC  650

seq1  TCTTGTGCCCACCGTGGTGAGAGAGCTGCCCCACTGCTCCCCACTGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCCCACCGTGGTGAGAGAGCTGCCCCACTGCTCCCCACTGTTCC  700

seq1  CATGCCCACATCACACGGAGTTCCCCGTCTTCACCCTTCCTGACGCCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCACATCACACGGAGTTCCCCGTCTTCACCCTTCCTGACGCCCGG  750

seq1  AGTGCCTAGCCCTCTCACACAGGGAAAACGAAGACAGGAGCATTGGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTAGCCCTCTCACACAGGGAAAACGAAGACAGGAGCATTGGCAGC  800

seq1  AATGAATATTGTCTTTCCCAGACCACCACAAAAACATGCCTACAAAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATTGTCTTTCCCAGACCACCACAAAAACATGCCTACAAAGAGG  850

seq1  CGTTTTCTAGGGATGATGATCTCCCCGGAGACTTCAATTCCCACCAGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTCTAGGGATGATGATCTCCCCGGAGACTTCAATTCCCACCAGGTT  900

seq1  CCCGAGACCAAGCGCCGTGAAGAGCAAATGAGGGCTAGAGAGATGACTCC  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCGAGACCAAGCGCCGTGAAGAGC-AATGAGGGCTAGAGAGATGACTCC  949

seq1  ATCAGCGGGTAAAGTGCTTGCACCACATAAAAGCTGTGGAGGTTCTTTAC  1000
      |||||||||||||||||||||| ||||| ||||||||||||| |||||||
seq2  ATCAGCGGGTAAAGTGCTTGCA-CACAT-AAAGCTGTGGAGG-TCTTTAC  996

seq1  CCAGTATAGACAAAATGCAAGCTCTGGGTTCAGTG-AGAGACGCTGTCTC  1049
      ||||||||||| |||||| |||||||||||||||| ||||||||||||||
seq2  CCAGTATAGAC-AAATGC-AGCTCTGGGTTCAGTGAAGAGACGCTGTCTC  1044

seq1  AAAAAAGTAAAGTGGAAAAAGGTAG-AGAAAGAT-AACAGAAGTTGACCT  1097
       |||||||||||| ||||||||||| |||||||| ||| ||||| || ||
seq2  -AAAAAGTAAAGT-GAAAAAGGTAGAAGAAAGATAAACGGAAGTGGA-CT  1091

seq1  GGACACACACATACAGGCAAGTGCATGCACAAACACTTGTG-TATACATG  1146
      |||||||||||||||||| |||||||||||||||||| ||| ||||||||
seq2  GGACACACACATACAGGC-AGTGCATGCACAAACACTGGTGTTATACATG  1140

seq1  CATGCATGCATGAACGAGAAC  1167
      ||||||||| ||| |||||||
seq2  CATGCATGC-TGACCGAGAAC  1160