BAC Information

Click to search

BAC

Clone NameB6Ng01-088J06
Chromosome19 (Build37)9 (Build37)
Map Location 16,923,925 - 16,924,91122,548,044 - 22,548,128
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
Downstream geneFoxb2, A230083H22Rik, Gcnt1, Rfk, Pcsk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088J06.bB6Ng01-088J06.g
ACCDH901393DH901394
length1,039128
definitionDH901393|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J06, 5' end.DH901394|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,923,925 - 16,924,911)(22,548,044 - 22,548,128)
sequence
gaattctgtcctgaaagctgtaaggtgatgtaaactctttccttccccaa
gttggttttggccagtttttatcacagcagtagaaaaaaagagaactagg
gtagattctattatttaatagttctggctatgaatccacttatacttcct
taaaagtatattcagacagtgcctaaaaaatgtgttggattttattttga
aaatgttcttgctcatcttgaatcataagaaaattttatcagactgtatt
agaaatctgaggttcaaagaaagatggcttaggactatttcccttcatcc
cagtaactgatcggtaaaagtcttagttctaatgagagatttctttttct
ttatagaagacaaacaagccatgcagtaggatacttggatagtgactctt
gatttctatatctctactatacttccccccaaataaagaacgttaaaaaa
tttctagccttgtgtgatggggtacatcttgaattgtcattggggtatta
tgtgacttaccattgagtaccattgtttttatagagttgggtacaccaaa
tttagagcatatatgttcaggattgtaatgagctcttgagggattattac
cttaatcagtatgaaggatcttgtttaactcttctgcctaattttgtttt
aaaatctattttgtcagtcactcagtgacacctgcctgtttcccagttcc
actgtctaatatacttctttccattgtctcaccataaggttttctctgcc
cttgttggtgatgtatacttcttgcagataataaataagtacggttctac
catgaagcctgctactcttcatagtttggtcagagactttggatttatta
ttgaaagttgtgtactcattcctgccattctgttggttttgtagtgtttg
gcgtttccctgtttctctctggcttagctgttattctagcacagtgtatt
ctttcttacagcatcatgggtgtatttatctttctcttcagttcaaaagg
atctttcagtatctctgtagatctggttttgtggtcatg
aaggccaccctgagctacatgggaagattgaaagaaagaaaggaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagagggggggagggagggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16923925_16924911
seq2: B6Ng01-088J06.b_45_1031

seq1  GAATTCTGTCCTGAAAGCTGTAAGGTGATGTAAACTCTTTCCTTCCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCTGAAAGCTGTAAGGTGATGTAAACTCTTTCCTTCCCCAA  50

seq1  GTTGGTTTTGGCCAGTTTTTATCACAGCAGTAGAAAAAAAGAGAACTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTTGGCCAGTTTTTATCACAGCAGTAGAAAAAAAGAGAACTAGG  100

seq1  GTAGATTCTATTATTTAATAGTTCTGGCTATGAATCCACTTATACTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTCTATTATTTAATAGTTCTGGCTATGAATCCACTTATACTTCCT  150

seq1  TAAAAGTATATTCAGACAGTGCCTAAAAAATGTGTTGGATTTTATTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATATTCAGACAGTGCCTAAAAAATGTGTTGGATTTTATTTTGA  200

seq1  AAATGTTCTTGCTCATCTTGAATCATAAGAAAATTTTATCAGACTGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCTTGCTCATCTTGAATCATAAGAAAATTTTATCAGACTGTATT  250

seq1  AGAAATCTGAGGTTCAAAGAAAGATGGCTTAGGACTATTTCCCTTCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGAGGTTCAAAGAAAGATGGCTTAGGACTATTTCCCTTCATCC  300

seq1  CAGTAACTGATCGGTAAAAGTCTTAGTTCTAATGAGAGATTTCTTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTGATCGGTAAAAGTCTTAGTTCTAATGAGAGATTTCTTTTTCT  350

seq1  TTATAGAAGACAAACAAGCCATGCAGTAGGATACTTGGATAGTGACTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAGACAAACAAGCCATGCAGTAGGATACTTGGATAGTGACTCTT  400

seq1  GATTTCTATATCTCTACTATACTTCCCCCCAAATAAAGAACGTTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTATATCTCTACTATACTTCCCCCCAAATAAAGAACGTTAAAAAA  450

seq1  TTTCTAGCCTTGTGTGATGGGGTACATCTTGAATTGTCATTGGGGTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGCCTTGTGTGATGGGGTACATCTTGAATTGTCATTGGGGTATTA  500

seq1  TGTGACTTACCATTGAGTACCATTGTTTTTATAGAGTTGGGTACACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTACCATTGAGTACCATTGTTTTTATAGAGTTGGGTACACCAAA  550

seq1  TTTAGAGCATATATGTTCAGGATTGTAATGAGCTCTTGAGGGATTATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGCATATATGTTCAGGATTGTAATGAGCTCTTGAGGGATTATTAC  600

seq1  CTTAATCAGTATGAAGGATCTTGTTTAACTCTTCTGCCTAATTTTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAGTATGAAGGATCTTGTTTAACTCTTCTGCCTAATTTTGTTTT  650

seq1  AAAATCTATTTTGTCAGTCACTCAGTGACACCTGCCTGTTTCCCAGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTATTTTGTCAGTCACTCAGTGACACCTGCCTGTTTCCCAGTTCC  700

seq1  ACTGTCTAATATACTTCTTTCCATTGTCTCACCATAAGGTTTTCTCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTAATATACTTCTTTCCATTGTCTCACCATAAGGTTTTCTCTGCC  750

seq1  CTTGTTGGTGATGTATACTTCTTGCAGATAATAAATAAGTACGGTTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGTGATGTATACTTCTTGCAGATAATAAATAAGTACGGTTCTAC  800

seq1  CATGAAGCCTGCTACTCTTCATAGTTTGGTCAGAGACTTTGGATTTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCCTGCTACTCTTCATAGTTTGGTCAGAGACTTTGGATTTATTA  850

seq1  TTGAAAGTTGTGTACTCATTCCTGCCATTCTGTTGGTTTTGTAGTGTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTTGTGTACTCATTCCTGCCATTCTGTTGGTTTTGTAGTGTTTG  900

seq1  GCGTTTCCCTGTTTCTCTCTGGCTTAGCTGTTATTCTAGCACAGTGTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTCCCTGTTTCTCTCTGGCTTAGCTGTTATTCTAGCACAGTGTATT  950

seq1  CTTTCTTACAGCATCATGGGTGTATTTATCTTTCTCT  987
      |||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTACAGCATCATGGGTGTATTTATCTTTCTCT  987

seq1: chr9_22548044_22548128
seq2: B6Ng01-088J06.g_113_201 (reverse)

seq1  CTCCCT--CTCCCT--CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  46
      ||||||  ||||||  | |  |||||||||||||||||||||||||||||
seq2  CTCCCTCCCTCCCTCCCCCCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  50

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTT  85
      |||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTT  89