BAC Information

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BAC

Clone NameB6Ng01-088J13
Chromosome19 (Build37)
Map Location 22,561,811 - 22,688,220
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneLOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088J13.bB6Ng01-088J13.g
ACCDH901407DH901408
length1,0911,125
definitionDH901407|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J13, 5' end.DH901408|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,561,811 - 22,562,918)(22,687,088 - 22,688,220)
sequence
gaattctaggcaggtctaaggtgcacagtttaggtccactagggaaagtg
attctatgtcttctcagctggcagtgcattccttgagaaagattctgatc
ttgcagaaaggctcagtgggaaagcaggccttgagttccctagagtgcca
ggacaaaatgaaaaaggatgacagttgtggcatctatttactttgtgaga
gctgtgtatttactctgcattttttttctgtatctaatgtgctttaaatt
gaaatgacattggcagtgagctctaggcaatgaacttctaggttcattct
ctaagtaatagatttccatataaggcactccctataggaacactgtcaaa
gaagcaaggcaattaattagcagaaagtacatttgatgattctcttgatg
ttgcagagacttatttaataacatttcagactacatctctataaatgggt
ataaggctaaacactttaaaacttttgatcgagtgatttctaaagttatt
ttaacacctattgaagatataacacagaacatggaaaaatgttaaaagca
tccaaagcattccatgagtaagaatacaacatttcatcaccaactcttag
ttttaaattctacttcttaagaggtaattaatctctattgtaaagttcct
ttctttttttttcatttattaattcatttattcactctacacccttcctc
ccctcctcccagccctatccttataaattcctcctcctattgcctcccct
ttctcctcagagaaggaatgacccccccccttgggtatcattttgccctg
gcacatgcattcacctcagaaataatagaatcctctcccactgaggccca
accaggcagtccagttagagaaagaggatccaaaggctgggaacagcatg
ggctccatttgttaggggacccacgtgaagaccaagctgcatatctgctc
caaagtataggaggcctagatcttttgaggtggttcagtctctgcgagcc
ccatgggcccagttagtgatttgtagtcttcttgtgtgtcttgacccctc
tgtgtcagatgacctagcttgtgtgagtacaacacaaaaaa
gaattctcaccttcattctgtatgtttctttcccctatccttctaaataa
tttctaggcttcccatttttttcttttcctttgccaagtagaatttcttt
cattaaaagtactaggttgactctcccacaccccaaaaaagtggttagaa
acggacctggagagatgtattggcagattagagcactaggattggaggtc
agtttccagtacctacaggatgggtcacagccacctctaaccccatagaa
accatacatgtggtatatatgcatacaggtaagcaagcattcatatacgt
aaaaatactttttaaagtggtttcatagaagcaggtagtgaatgtggaag
taggtttaggttctaatttgtatgttagcttccattcacagcagggcata
aactaacatctctgggcaaaattttaatctactattaacccatgagactt
atgtatgactttttaattcaacattttgggggtctaaatgatatgagatt
tcgctaaaaattccaaatatgatgatgttttcaaataatgaacttcattt
ttgctaaaaagtctttgcctgattatttaaaacaataatatctatagcaa
cttagggaatgaaattttttgatgagcagcatagaaatacattttatagt
tgctaatctctttttttaaaaataaacatattagcaaattatacatatgc
cattgatcctttgtgagagaatcccagaaaagtaaccttgaaacatgggc
atctgaaaatgagggttggacagatcagtagctgtctagtgggtaaacat
tgaaagcctctttccaacttctggagcaagagattatagccttgaaaccc
atgatgcattcccaagcgtgtcctacagaaaccaaaacacacactcacac
acacacacacacacatacacacacacacacacacacacaccatttagatt
ctcagaccaaagagctagtattggagtgtatatgtgtgcatgcaaatcca
catatccccaggtaggcatagaatttaagaagggtcttcactataagtca
aggctggactagaactcacaatcctctagccctgcagctaggtacgagat
ttctggcatatgccaccatgctagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22561811_22562918
seq2: B6Ng01-088J13.b_46_1136

seq1  GAATTCTAGGCAGGTCTAAGGTGCACAGTTTAGGTCCACTAGGGAAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCAGGTCTAAGGTGCACAGTTTAGGTCCACTAGGGAAAGTG  50

seq1  ATTCTATGTCTTCTCAGCTGGCAGTGCATTCCTTGAGAAAGATTCTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATGTCTTCTCAGCTGGCAGTGCATTCCTTGAGAAAGATTCTGATC  100

seq1  TTGCAGAAAGGCTCAGTGGGAAAGCAGGCCTTGAGTTCCCTAGAGTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAAGGCTCAGTGGGAAAGCAGGCCTTGAGTTCCCTAGAGTGCCA  150

seq1  GGACAAAATGAAAAAGGATGACAGTTGTGGCATCTATTTACTTTGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAATGAAAAAGGATGACAGTTGTGGCATCTATTTACTTTGTGAGA  200

seq1  GCTGTGTATTTACTCTGCATTTTTTTTCTGTATCTAATGTGCTTTAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTATTTACTCTGCATTTTTTTTCTGTATCTAATGTGCTTTAAATT  250

seq1  GAAATGACATTGGCAGTGAGCTCTAGGCAATGAACTTCTAGGTTCATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACATTGGCAGTGAGCTCTAGGCAATGAACTTCTAGGTTCATTCT  300

seq1  CTAAGTAATAGATTTCCATATAAGGCACTCCCTATAGGAACACTGTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAATAGATTTCCATATAAGGCACTCCCTATAGGAACACTGTCAAA  350

seq1  GAAGCAAGGCAATTAATTAGCAGAAAGTACATTTGATGATTCTCTTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGGCAATTAATTAGCAGAAAGTACATTTGATGATTCTCTTGATG  400

seq1  TTGCAGAGACTTATTTAATAACATTTCAGACTACATCTCTATAAATGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGACTTATTTAATAACATTTCAGACTACATCTCTATAAATGGGT  450

seq1  ATAAGGCTAAACACTTTAAAACTTTTGATCGAGTGATTTCTAAAGTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCTAAACACTTTAAAACTTTTGATCGAGTGATTTCTAAAGTTATT  500

seq1  TTAACACCTATTGAAGATATAACACAGAACATGGAAAAATGTTAAAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACCTATTGAAGATATAACACAGAACATGGAAAAATGTTAAAAGCA  550

seq1  TCCAAAGCATTCCATGAGTAAGAATACAACATTTCATCACCAACTCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGCATTCCATGAGTAAGAATACAACATTTCATCACCAACTCTTAG  600

seq1  TTTTAAATTCTACTTCTTAAGAGGTAATTAATCTCTATTGTAAAGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTCTACTTCTTAAGAGGTAATTAATCTCTATTGTAAAGTTCCT  650

seq1  TTCTTTTTTTTTCATTTATTAATTCATTTATTCACTCTACACCCTTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTCATTTATTAATTCATTTATTCACTCTACACCCTTCCTC  700

seq1  CCCTCCTCCCAGCCCTATCCTTATAAATTCCTCCTCCTATTGCCTCCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCCCAGCCCTATCCTTATAAATTCCTCCTCCTATTGCCTCCCCT  750

seq1  TTCTCCTCAGAGAAGGAATGACCCCCCCCCTTGGGTATCATTTTGCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCAGAGAAGGAATGACCCCCCCCCTTGGGTATCATTTTGCCCTG  800

seq1  GCACATGCATTCACCTCAGAAATAATAGAATCCTCTCCCACTGAGGCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCATTCACCTCAGAAATAATAGAATCCTCTCCCACTGAGGCCCA  850

seq1  ACCAGGCAGTCCAGTTAGAGAAAGAGGATCCAAAGGCTGGGAACAGCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCAGTCCAGTTAGAGAAAGAGGATCCAAAGGCTGGGAACAGCATG  900

seq1  GGCTCCATTTGTTAGGGGACCCACGTGAAGACCAAGCTGCATATCTGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATTTGTTAGGGGACCCACGTGAAGACCAAGCTGCATATCTGCTC  950

seq1  CAAAGTATAGGAGGCCTAGATCTTTTGAGGTGGTTCAGTCTCTGCGAGCC  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAAGTATAGGAGGCCTAGATCTTTTGAGGTGGTTCAGTCTCTGCGAG-C  999

seq1  CCCATGGGCCCAGGTTAGTTGATTTTGTAGGTCTTCTTGTGGTGTCCTTG  1050
      |||||||||||| ||||| ||| |||||| |||||||||| |||| ||||
seq2  CCCATGGGCCCA-GTTAG-TGA-TTTGTA-GTCTTCTTGT-GTGT-CTTG  1043

seq1  ACCCCTCTGGTTGGTTCAAGATGACCCTAGCTTGTGTTGAGTTAACAACA  1100
      |||||||||  ||  || |||||| ||||||||||| |||||  ||||| 
seq2  ACCCCTCTG--TG--TC-AGATGA-CCTAGCTTGTG-TGAGT--ACAAC-  1083

seq1  ACAAAAAA  1108
      ||||||||
seq2  ACAAAAAA  1091

seq1: chr19_22687088_22688220
seq2: B6Ng01-088J13.g_67_1191 (reverse)

seq1  GCTAGGCATGGTGGCATATGCCAGAAATCCTGGTACTTAGGCTGCAGGGC  50
      |||| ||||||||||||||||||||||| || |||| || ||||||||||
seq2  GCTA-GCATGGTGGCATATGCCAGAAAT-CTCGTACCTA-GCTGCAGGGC  47

seq1  TAGGAGGATTGTGAGTTCTAGTCCAGCCTTGACTATATAGTG-AGACCCT  99
      || ||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TA-GAGGATTGTGAGTTCTAGTCCAGCCTTGACT-TATAGTGAAGACCCT  95

seq1  TCTTTAAATTCTATGCCTACCCTGTGGGTATGTGGATTTGCATGCACACA  149
      || |||||||||||||||| |||| || ||||||||||||||||||||||
seq2  TC-TTAAATTCTATGCCTA-CCTGGGGATATGTGGATTTGCATGCACACA  143

seq1  TATACACTCCAAATACTAGCTCTTTTGGTCTGAGAATCTAAGTGGTGTGT  199
      |||||||||| ||||||||||| |||||||||||||||||| ||||||||
seq2  TATACACTCC-AATACTAGCTC-TTTGGTCTGAGAATCTAAATGGTGTGT  191

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT  249
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  GTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGAGTGTGTGTTT  241

seq1  TGGTTTCTGTAGGACACGCTTGGGAATGCATCATGGGTTTCAAGGCTATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGTAGGACACGCTTGGGAATGCATCATGGGTTTCAAGGCTATA  291

seq1  ATCTCTTGCTCCAGAAGTTGGAAAGAGGCTTTCAATGTTTACCCACTAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGCTCCAGAAGTTGGAAAGAGGCTTTCAATGTTTACCCACTAGA  341

seq1  CAGCTACTGATCTGTCCAACCCTCATTTTCAGATGCCCATGTTTCAAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACTGATCTGTCCAACCCTCATTTTCAGATGCCCATGTTTCAAGGT  391

seq1  TACTTTTCTGGGATTCTCTCACAAAGGATCAATGGCATATGTATAATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCTGGGATTCTCTCACAAAGGATCAATGGCATATGTATAATTTG  441

seq1  CTAATATGTTTATTTTTAAAAAAAGAGATTAGCAACTATAAAATGTATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATGTTTATTTTTAAAAAAAGAGATTAGCAACTATAAAATGTATTT  491

seq1  CTATGCTGCTCATCAAAAAATTTCATTCCCTAAGTTGCTATAGATATTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGCTCATCAAAAAATTTCATTCCCTAAGTTGCTATAGATATTAT  541

seq1  TGTTTTAAATAATCAGGCAAAGACTTTTTAGCAAAAATGAAGTTCATTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAATAATCAGGCAAAGACTTTTTAGCAAAAATGAAGTTCATTAT  591

seq1  TTGAAAACATCATCATATTTGGAATTTTTAGCGAAATCTCATATCATTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACATCATCATATTTGGAATTTTTAGCGAAATCTCATATCATTTA  641

seq1  GACCCCCAAAATGTTGAATTAAAAAGTCATACATAAGTCTCATGGGTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCCAAAATGTTGAATTAAAAAGTCATACATAAGTCTCATGGGTTAA  691

seq1  TAGTAGATTAAAATTTTGCCCAGAGATGTTAGTTTATGCCCTGCTGTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATTAAAATTTTGCCCAGAGATGTTAGTTTATGCCCTGCTGTGAA  741

seq1  TGGAAGCTAACATACAAATTAGAACCTAAACCTACTTCCACATTCACTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTAACATACAAATTAGAACCTAAACCTACTTCCACATTCACTAC  791

seq1  CTGCTTCTATGAAACCACTTTAAAAAGTATTTTTACGTATATGAATGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTATGAAACCACTTTAAAAAGTATTTTTACGTATATGAATGCTT  841

seq1  GCTTACCTGTATGCATATATACCACATGTATGGTTTCTATGGGGTTAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCTGTATGCATATATACCACATGTATGGTTTCTATGGGGTTAGAG  891

seq1  GTGGCTGTGACCCATCCTGTAGGTACTGGAAACTGACCTCCAATCCTAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTGACCCATCCTGTAGGTACTGGAAACTGACCTCCAATCCTAGT  941

seq1  GCTCTAATCTGCCAATACATCTCTCCAGGTCCGTTTCTAACCACTTTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAATCTGCCAATACATCTCTCCAGGTCCGTTTCTAACCACTTTTTT  991

seq1  GGGGTGTGGGAGAGTCAACCTAGTACTTTTAATGAAAGAAATTCTACTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTGGGAGAGTCAACCTAGTACTTTTAATGAAAGAAATTCTACTTG  1041

seq1  GCAAAGGAAAAGAAAAAAATGGGAAGCCTAGAAATTATTTAGAAGGATAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAAAAGAAAAAAATGGGAAGCCTAGAAATTATTTAGAAGGATAG  1091

seq1  GGGAAAGAAACATACAGAATGAAGGTGAGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAAACATACAGAATGAAGGTGAGAATTC  1125