BAC Information

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BAC

Clone NameB6Ng01-090B12
Chromosome19 (Build37)
Map Location 41,238,753 - 41,337,506
singlet/doubletdoublet
Overlap geneTll2, Tm9sf3
Upstream geneCyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10
Downstream genePik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090B12.bB6Ng01-090B12.g
ACCDH902486DH902487
length1,1761,068
definitionDH902486|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B12, 5' end.DH902487|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,238,753 - 41,239,962)(41,336,422 - 41,337,506)
sequence
gaattcattcatagtacaggggtatattcttcctaaggaattggctggaa
gacaaaaaaggcacacatatacatgtgtacacatgcacacatacacaggc
acatacgtatgcacaggtatgtacacacatacatagaaacatatcgcata
catttgaccgttgtttaattacctcttcagggtaacaatatgcaaagcct
tgtaaatttcattagtcacaggggtttattcaaactgtctcctttgcata
agaaacccaggcttacagctggtctctgggaaagaaagccctccaggcct
tgaaaagagagcttgccctgtccaaaactctctctgaaacacagtggagg
tcagcggcccgtgatgcatgaggccaggctgcaatgtctctaaccagcat
ctgcgattcaatcccaccgtttcctttatgcaacaattcaccgaattcca
cgttgttcttttttctaattcaccatataattcacctcccaagttcaatt
aagaagcaatctgttagcaactttgggagcaagctgctttcctttgcgaa
agcccaattttcttccgctcccaacaaaaagtgccttaattacatgcatc
agaatagacactggtgtacacacaacgccctttcatctcaccataattaa
tgaaatatcaacggtacacatctgagatatccaggcagaaggagataggc
tccttcaaaccccaaggggaccttgtttcataaatcaatattgcccattt
gaataatagtgactatgaatattcattaatatggaaatgcataaacaaaa
ctttaattattccttctatttttcattcttaaagcataacattactggat
ccttcattttattgtaaacacaatagctactgttctttactgcagattgt
attagggtgcccttatagataattatagcagaaatggctttgagtcaatc
aaagagaagaagaaaaaaccccagcgcaagatctacaaccagtttaccag
cagcccattcacttcagaaatctcggtgagcactgccctggacagcaaac
gacgcagctctgccacgtagcctgcttcatgggtctggttatggatagca
taaataatagctcatttttcagagataagcaccttgaaaaaactgtactg
attttggttaacggtgctggctgtga
gaattcacttatttatttttttattcagaatggtagacgcggggaagtgt
ggaaagtctgataaacctagaagattgcttggcaaattggagattgtttc
aaggtttttatctgtattgtgatttttttttttttgcccgagtagttgtg
tatttactaaatttaaaatatgtggagaacgtttggctgtagctgatcgg
tgacaaaatgggagtacgctgcttttaaggggcagacgttagattttgtt
tgtagtgaacaaaactttgttttgattagccaattaaaaactctaaatta
ggctgttgtattttcagtcactgctagaatctaattgcatgtgtatgcga
gtttttttttccagagaaacgttgaatcagtaactttttttctgcgacac
ttgtgaattttctctaagatatttttggtttcctttaaatttcagcaagt
atagtagtttaaatagtatttgccttttttttttttttttaacagttgag
tttccatgtaaaatctggaacttgttgttagttttagatcgaccatatag
acagaaatttatgttctactttttgaactttctattttatactgctacta
agagggaagacttagtttataatataatcagttgtaagtgtacaaaacta
gcataatccacaagttttgtgcatggcagtttcaatgagaaaaattttaa
agcttatttatttttattctatgtgtcagttttgccagcatgaatgtagt
atgtgtatcatgtatattctgagtatcttagaagagggtgtcagatcctc
tggaactagagtgacagaaagttgtaagctacccagtgtgaatactggga
accaaagttaggtcttaactgcttgagctatctcctccagcccccagttc
agtgaaattttattgttaggatgccatattagttacttcattcgttcatt
cattcattcagttctgggatgaactcagcattctgtgtggattgtaaata
ttccaccactgaatggacactcttttgaacagattcctctgtgtagcctg
ctgtctggaactgttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_41238753_41239962
seq2: B6Ng01-090B12.b_49_1224

seq1  GAATTCATTCATAGTACAGGGGTATATTCTTCCTAAGGAATTGGCTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATAGTACAGGGGTATATTCTTCCTAAGGAATTGGCTGGAA  50

seq1  GACAAAAAAGGCACACATATACATGTGTACACATGCACACATACACAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAAGGCACACATATACATGTGTACACATGCACACATACACAGGC  100

seq1  ACATACGTATGCACAGGTATGTACACACATACATAGAAACATATCGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACGTATGCACAGGTATGTACACACATACATAGAAACATATCGCATA  150

seq1  CATTTGACCGTTGTTTAATTACCTCTTCAGGGTAACAATATGCAAAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGACCGTTGTTTAATTACCTCTTCAGGGTAACAATATGCAAAGCCT  200

seq1  TGTAAATTTCATTAGTCACAGGGGTTTATTCAAACTGTCTCCTTTGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTTCATTAGTCACAGGGGTTTATTCAAACTGTCTCCTTTGCATA  250

seq1  AGAAACCCAGGCTTACAGCTGGTCTCTGGGAAAGAAAGCCCTCCAGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCAGGCTTACAGCTGGTCTCTGGGAAAGAAAGCCCTCCAGGCCT  300

seq1  TGAAAAGAGAGCTTGCCCTGTCCAAAACTCTCTCTGAAACACAGTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGAGCTTGCCCTGTCCAAAACTCTCTCTGAAACACAGTGGAGG  350

seq1  TCAGCGGCCCGTGATGCATGAGGCCAGGCTGCAATGTCTCTAACCAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGGCCCGTGATGCATGAGGCCAGGCTGCAATGTCTCTAACCAGCAT  400

seq1  CTGCGATTCAATCCCACCGTTTCCTTTATGCAACAATTCACCGAATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGATTCAATCCCACCGTTTCCTTTATGCAACAATTCACCGAATTCCA  450

seq1  CGTTGTTCTTTTTTCTAATTCACCATATAATTCACCTCCCAAGTTCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTTCTTTTTTCTAATTCACCATATAATTCACCTCCCAAGTTCAATT  500

seq1  AAGAAGCAATCTGTTAGCAACTTTGGGAGCAAGCTGCTTTCCTTTGCGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAATCTGTTAGCAACTTTGGGAGCAAGCTGCTTTCCTTTGCGAA  550

seq1  AGCCCAATTTTCTTCCGCTCCCAACAAAAAGTGCCTTAATTACATGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAATTTTCTTCCGCTCCCAACAAAAAGTGCCTTAATTACATGCATC  600

seq1  AGAATAGACACTGGTGTACACACAACGCCCTTTCATCTCACCATAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGACACTGGTGTACACACAACGCCCTTTCATCTCACCATAATTAA  650

seq1  TGAAATATCAACGGTACACATCTGAGATATCCAGGCAGAAGGAGATAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATCAACGGTACACATCTGAGATATCCAGGCAGAAGGAGATAGGC  700

seq1  TCCTTCAAACCCCAAGGGGACCTTGTTTCATAAATCAATATTGCCCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAACCCCAAGGGGACCTTGTTTCATAAATCAATATTGCCCATTT  750

seq1  GAATAATAGTGACTATGAATATTCATTAATATGGAAATGCATAAACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATAGTGACTATGAATATTCATTAATATGGAAATGCATAAACAAAA  800

seq1  CTTTAATTATTCCTTCTATTTTTCATTCTTAAAGCATAACATTACTGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTATTCCTTCTATTTTTCATTCTTAAAGCATAACATTACTGGAT  850

seq1  CCTTCATTTTATTGTAAACACAATAGCTACTGTTCTTTACTGCAGATTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTTTATTGTAAACACAATAGCTACTGTTCTTTACTGCAGATTGT  900

seq1  ATTAGGGTGCCCTTATAGATAATTATAGCAGAAAATGGCTTTGAGTCAAT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTAGGGTGCCCTTATAGATAATTATAGCAG-AAATGGCTTTGAGTCAAT  949

seq1  CAAAGAAGAAGAAGAAAAAACCCCAAGCGCAAGATCCTACAAACCAGTTT  1000
      ||||| |||||||||||||||||| |||||||||| |||| |||||||||
seq2  CAAAG-AGAAGAAGAAAAAACCCC-AGCGCAAGAT-CTAC-AACCAGTTT  995

seq1  ACCAGCAGCCCATTCACTTCAGAAAATCTCGGTTGAGCACCTGCCCTGGA  1050
      |||||||||||||||||||||| ||||||||| |||||| ||||||||||
seq2  ACCAGCAGCCCATTCACTTCAG-AAATCTCGG-TGAGCA-CTGCCCTGGA  1042

seq1  CAGCAAACCGACGCAGGCTCCTGCCCACGTAGCCTGCCTTCATGGTGTCT  1100
      ||||||| ||||||| ||| ||| |||||||||||| |||||||| ||||
seq2  CAGCAAA-CGACGCA-GCT-CTG-CCACGTAGCCTG-CTTCATGG-GTCT  1086

seq1  GAGTTCTAATGGATTAGCATAAATAATAAGCTCATTTTTTCAGGGAGGAA  1150
      | |||   ||||| ||||||||||||| |||||| |||||||| ||    
seq2  G-GTT---ATGGA-TAGCATAAATAAT-AGCTCA-TTTTTCAGAGA----  1125

seq1  TTAAGCACTTTGAAAAAAAAACTGTAACTGAATTTTGTGTAAGACGGTGC  1200
       ||||||| |||   |||||||||| |||| ||||||  ||  |||||||
seq2  -TAAGCACCTTG---AAAAAACTGT-ACTG-ATTTTGGTTA--ACGGTGC  1167

seq1  GTGGCTGTGA  1210
       |||||||||
seq2  -TGGCTGTGA  1176

seq1: chr19_41336422_41337506
seq2: B6Ng01-090B12.g_69_1136 (reverse)

seq1  AAGAACAAGTTCCAGGACAGCCAGGGCTACACAGAGGAAACCCTGTTTCA  50
      |||||| ||||||| ||||||   |||||||||||||||   ||| ||||
seq2  AAGAAC-AGTTCCA-GACAGC--AGGCTACACAGAGGAA--TCTG-TTCA  43

seq1  AAAAAAGAAGTGTTCCATTCAGTGGTGGAATATGTACATACCACACAGAA  100
      |||     |||| |||||||||||||||||||| ||||  ||||||||||
seq2  AAA----GAGTG-TCCATTCAGTGGTGGAATATTTACAATCCACACAGAA  88

seq1  TGGCCTGAGTTCAATCCCCAGAACTGAATGAATGAATGAACGAATGAAGT  150
      ||  |||||||||   ||||||||||||||||||||||||||||||||||
seq2  TG--CTGAGTTCA--TCCCAGAACTGAATGAATGAATGAACGAATGAAGT  134

seq1  AACTAAATATGGCATTCCTAACAATAAAATTTCACTGAACTGGGGGCTGG  200
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACT-AATATGGCA-TCCTAACAATAAAATTTCACTGAACTGGGGGCTGG  182

seq1  A-GAGATAGCTCAAGCAGTTAAGACCTAACTTTGGTTCCCAGTATTCACA  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAGCTCAAGCAGTTAAGACCTAACTTTGGTTCCCAGTATTCACA  232

seq1  CTGGGTAGCTTACAACTTTCTGTCACTCTAGTTCCAGGGGATCTGACACC  299
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGGGTAGCTTACAACTTTCTGTCACTCTAGTTCCAGAGGATCTGACACC  282

seq1  CTCTTCTAAGATACTCAGAATATACATGATACACATACTACATTCATGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTAAGATACTCAGAATATACATGATACACATACTACATTCATGCT  332

seq1  GGCAAAACTGACACATAGAATAAAAATAAATAAGCTTTAAAATTTTTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACTGACACATAGAATAAAAATAAATAAGCTTTAAAATTTTTCTC  382

seq1  ATTGAAACTGCCATGCACAAAACTTGTGGATTATGCTAGTTTTGTACACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACTGCCATGCACAAAACTTGTGGATTATGCTAGTTTTGTACACT  432

seq1  TACAACTGATTATATTATAAACTAAGTCTTCCCTCTTAGTAGCAGTATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTGATTATATTATAAACTAAGTCTTCCCTCTTAGTAGCAGTATAA  482

seq1  AATAGAAAGTTCAAAAAGTAGAACATAAATTTCTGTCTATATGGTCGATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGTTCAAAAAGTAGAACATAAATTTCTGTCTATATGGTCGATC  532

seq1  TAAAACTAACAACAAGTTCCAGATTTTACATGGAAACTCAACTGTTAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTAACAACAAGTTCCAGATTTTACATGGAAACTCAACTGTTAAAA  582

seq1  AAAAAAAAAAAAGGCAAATACTATTTAAACTACTATACTTGCTGAAATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGGCAAATACTATTTAAACTACTATACTTGCTGAAATTT  632

seq1  AAAGGAAACCAAAAATATCTTAGAGAAAATTCACAAGTGTCGCAGAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAACCAAAAATATCTTAGAGAAAATTCACAAGTGTCGCAGAAAAA  682

seq1  AAGTTACTGATTCAACGTTTCTCTGGAAAAAAAAACTCGCATACACATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTGATTCAACGTTTCTCTGGAAAAAAAAACTCGCATACACATGC  732

seq1  AATTAGATTCTAGCAGTGACTGAAAATACAACAGCCTAATTTAGAGTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATTCTAGCAGTGACTGAAAATACAACAGCCTAATTTAGAGTTTT  782

seq1  TAATTGGCTAATCAAAACAAAGTTTTGTTCACTACAAACAAAATCTAACG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGCTAATCAAAACAAAGTTTTGTTCACTACAAACAAAATCTAACG  832

seq1  TCTGCCCCTTAAAAGCAGCGTACTCCCATTTTGTCACCGATCAGCTACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCTTAAAAGCAGCGTACTCCCATTTTGTCACCGATCAGCTACAG  882

seq1  CCAAACGTTCTCCACATATTTTAAATTTAGTAAATACACAACTACTCGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGTTCTCCACATATTTTAAATTTAGTAAATACACAACTACTCGGG  932

seq1  CAAAAAAAAAAAAATCACAATACAGATAAAAACCTTGAAACAATCTCCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAATCACAATACAGATAAAAACCTTGAAACAATCTCCAA  982

seq1  TTTGCCAAGCAATCTTCTAGGTTTATCAGACTTTCCACACTTCCCCGCGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAAGCAATCTTCTAGGTTTATCAGACTTTCCACACTTCCCCGCGT  1032

seq1  CTACCATTCTGAATAAAAAAATAAATAAGTGAATTC  1085
      ||||||||||||||||||||||||||||||||||||
seq2  CTACCATTCTGAATAAAAAAATAAATAAGTGAATTC  1068