BAC Information

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BAC

Clone NameB6Ng01-091C16
Chromosome19 (Build37)
Map Location 9,680,954 - 9,682,013
singlet/doubletsinglet
Overlap geneLOC623688
Upstream geneSlc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b
Downstream geneLOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091C16.bB6Ng01-091C16.g
ACCDH903271DH903272
length1,2431,058
definitionDH903271|Mus musculus domesticus DNA, BAC clone: B6Ng01-091C16, 5' end.DH903272|Mus musculus domesticus DNA, BAC clone: B6Ng01-091C16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatgtattggatattagtccc
ctatctgatttaggataggtaaagatactttcccaatctgatggtggcct
ttttgtcttattgacagtgtcttttgccttacagaagctttgcagtttca
tgaggtcccatttatgaattctcgatcttatagcacaagccattgatgtt
ctattcaggaatttttcccctgtgcccatattttcgaggctttcccccaa
tttctcctctataactttcagtgtctctgctcttatgtggagttccttga
tccacttagatttggccttactacaaggagataggaatggatcgatttcc
attcttctacatgataaccaccagttgtgccagtaccatttgttgaaatg
ctgtctttcttcactggatggttttagctcccttgtcgaagatcaagtga
ccataggtgtgtggattcatctctggtcttcaattctattctattggtct
acttgtctgtcgctataccagtaccatgcagtttttgtcacaattgctct
ggagtacagctttaggtcaggcatggtgattccaccagaggttctttaat
ccttgaaaagagtttttgctatcctaggttttttgttattccagatgaat
ttgcagattgctctttctattcgttgaagaattgagttggaattttgatg
gggattgcattgaatctgtagattgcttttggcaagatagccatttttac
aatgttggtcctgccaatccatgagcatgggagatctttccatcttctga
gatcttctttctttcttcagaagttcttcttgaagttcttatcatacaga
tctttcacttccttagagtcacaccaagatattttatattatttgtgact
attgagaagagtgtgtgccctaatttcttttctgcctgtttattctttgt
gtagagaaggcattgacttgcttgagtaatttatatcagctacttcacga
agctgttatcaggttagaagttctctgtagattttaggtccactaaatat
aatacatccaacatctgcaaaggtattttgacttcatcttacaatgattc
ctgattccttttggtggatgctgctagacttcagtacaggtgtaacggaa
gtggctgagatatgaacgcactccgtgcctaagctcctcgaca
gaattctcagatggcctttttcagtaaagcatttgtcacattcactgcat
ttgtaaggtttctctcctgcatgaattttctgatgaatattaagatggga
tttctgggaaaagcatttgtcacattcagtacatttgtgaggtgcataat
ggggggattcaggaatcacattgctaagcttgttccatttagaagacttc
tcttgaatattcatgtgttcaagaacaatgtactggctgtcttgatccat
gaccttcccatacattccacatttgcaatgattttccacaaacaacagat
tattgtaattctccaacatcacatccatgtacaatgtcctctgagcaaaa
ctgagagattcccattcctccagtgagaagtccaaagccacgtccttgaa
ggttaacagaccctgtagcatgtttagcagagacacactcattctttttg
ttgaacttctcccaggttctggatcctttgtgagactctcctttaccttt
aaccttccactgctcttagtgttgatttacagttatgcagatttggctga
gcatatgaatatctggaaggtgacaggaccagctgctgaatatcctagga
ggccaacacaacaactgcagcttaaggaagttttcaggttcagcaaatac
taggcatgagtctccctccaggagttccttaccacgaggcagccaagaaa
caaagagaatgatgaaatcttatgtcaacttctataatactaattttatt
gttacaatattatataaattttaaagaatatgataaaaacaaaaggtatt
gcaggttttgaagatggggtctctgggaggagttggggtaaaaaaggcaa
agaagaatgtgatgtaaatctatttactcaaaatatgtttttaaatatta
acaaattcagataatttgaaattatgtatcttttctcatatactgcataa
aacttaaatcaaaaagtaaattaaagtatattatgtaatcttccccttta
gctttctctttcaccctcatgtcacagctacttttatctatcttcaatca
ttctatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9680954_9682013
seq2: B6Ng01-091C16.g_66_1123 (reverse)

seq1  AGATAGATAGAT---AGATAGTTAA----GGCTGTGACATGGAGGGGTTG  43
      |||||||  |||   |||||| |||     |||||||||| |||||    
seq2  AGATAGAATGATTGAAGATAGATAAAAGTAGCTGTGACAT-GAGGG---T  46

seq1  GAAAGAGGAAAGCTAAAGGGGAAGATTACATAATTATACTTTAATTTACT  93
      |||||| |||||||||||||||||||||||||| ||||||||||||||| 
seq2  GAAAGA-GAAAGCTAAAGGGGAAGATTACATAA-TATACTTTAATTTAC-  93

seq1  TTTTTGATTTAAGTTTTATTGCAGTATTATGAGAAAAGATACATAATTTC  143
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  TTTTTGATTTAAGTTTTA-TGCAGTA-TATGAGAAAAGATACATAATTTC  141

seq1  AATTTATCTGAATTTGTTAATATTTAAAAACATATTTTGAGTAAATAGAT  193
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCTGAATTTGTTAATATTTAAAAACATATTTTGAGTAAATAGAT  191

seq1  TTACATCACATTCTTCTTTGCCTTTTTTACCCCAACTCCTCCCAGAGACC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCACATTCTTCTTTGCCTTTTTTACCCCAACTCCTCCCAGAGACC  241

seq1  CCATCTTCAAAACCTGCAATACCTTTTGTTTTTATCATATTCTTTAAAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCAAAACCTGCAATACCTTTTGTTTTTATCATATTCTTTAAAAT  291

seq1  TTATATAATATTGTAACAATAAAATTAGTATTATAGAAGTTGACATAAGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAATATTGTAACAATAAAATTAGTATTATAGAAGTTGACATAAGA  341

seq1  TTTCATCATTCTCTTTGTTTCTTGGCTGCCTCGTGGTAAGGAACTCCTGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCATTCTCTTTGTTTCTTGGCTGCCTCGTGGTAAGGAACTCCTGG  391

seq1  AGGGAGACTCATGCCTAGTATTTGCTGAACCTGAAAACTTCCTTAAGCTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACTCATGCCTAGTATTTGCTGAACCTGAAAACTTCCTTAAGCTG  441

seq1  CAGTTGTTGTGTTGGCCTCCTAGGATATTCAGCAGCTGGTCCTGTCACCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTGTGTTGGCCTCCTAGGATATTCAGCAGCTGGTCCTGTCACCT  491

seq1  TCCAGATATTCATATGCTCAGCCAAATCTGCATAACTGTAAATCAACACT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATATTCATATGCTCAGCCAAATCTGCATAACTGTAAATCAACACT  541

seq1  AAGAGCAGTGGAAGGTTAAAGGTAAAGGAGAGTCTCACAAAGGATCCAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTGGAAGGTTAAAGGTAAAGGAGAGTCTCACAAAGGATCCAGA  591

seq1  ACCTGGGAGAAGTTCAACAAAAAGAATGAGTGTGTCTCTGCTAAACATGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGAAGTTCAACAAAAAGAATGAGTGTGTCTCTGCTAAACATGC  641

seq1  TACAGGGTCTGTTAACCTTCAAGGACGTGGCTTTGGACTTCTCACTGGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTCTGTTAACCTTCAAGGACGTGGCTTTGGACTTCTCACTGGAG  691

seq1  GAATGGGAATCTCTCAGTTTTGCTCAGAGGACATTGTACATGGATGTGAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGAATCTCTCAGTTTTGCTCAGAGGACATTGTACATGGATGTGAT  741

seq1  GTTGGAGAATTACAATAATCTGTTGTTTGTGGAAAATCATTGCAAATGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGAATTACAATAATCTGTTGTTTGTGGAAAATCATTGCAAATGTG  791

seq1  GAATGTATGGGAAGGTCATGGATCAAGACAGCCAGTACATTGTTCTTGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATGGGAAGGTCATGGATCAAGACAGCCAGTACATTGTTCTTGAA  841

seq1  CACATGAATATTCAAGAGAAGTCTTCTAAATGGAACAAGCTTAGCAATGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAATATTCAAGAGAAGTCTTCTAAATGGAACAAGCTTAGCAATGT  891

seq1  GATTCCTGAATCCCCCCATTATGCACCTCACAAATGTACTGAATGTGACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGAATCCCCCCATTATGCACCTCACAAATGTACTGAATGTGACA  941

seq1  AATGCTTTTCCCAGAAATCCCATCTTAATATTCATCAGAAAATTCATGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTTCCCAGAAATCCCATCTTAATATTCATCAGAAAATTCATGCA  991

seq1  GGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGAAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGAAAA  1041

seq1  AGGCCATCTGAGAATTC  1060
      |||||||||||||||||
seq2  AGGCCATCTGAGAATTC  1058