BAC Information

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BAC

Clone NameB6Ng01-091J15
Chromosome19 (Build37)
Map Location 46,687,212 - 46,829,376
singlet/doubletdoublet
Overlap geneD19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt
Upstream geneFbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2
Downstream geneCnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091J15.bB6Ng01-091J15.g
ACCDH903580DH903581
length9791,165
definitionDH903580|Mus musculus domesticus DNA, BAC clone: B6Ng01-091J15, 5' end.DH903581|Mus musculus domesticus DNA, BAC clone: B6Ng01-091J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,828,387 - 46,829,376)(46,687,212 - 46,688,401)
sequence
gaattctttacagctagcctttcctgaaatctagtcttcaactacccaaa
aggaaatgagtatatgagaaaacaccctaacgacacctaaaaatgccccc
ccccccccgcctcttcttgctctgcctgctttctcctatccactactcgc
tctggtctgagccctagagtaagggccaggcagacgatcagtgtcccaca
ccttttaatactacgttcccagaggctggggatgtagctcgattggcagt
gttttcctggtatctgtgaatctctaggtttagttctcagcccccccccc
cccgataaatccaggcttggccatatacacccctaaccctaacacttgtg
agagacacagaaaaaccaccagtacacagtcatctttggttatatagcag
gttcgaggccagcctggactacatcaagaatttgttcccaacctccattt
ggtggggtgaagatgagcaggtaagattgggatggacagaagaaaaaatt
ccatagcctaaatgtatgaatctgaagcctcctgtgagagtcacacctgc
atgcctcagacacctgagttggaacctgggtttctttcactctagcttag
ctcactcccatggcctctgattcatctcttctgaggatgaaggtaaaaga
taactgtcagcccaccctgctccccaggcacagacaaaacactcacaaaa
tgcaagctcagacttttgcactttccagttcctctaaggtactgttgatt
ttaattattactaagctgaagggttatttcttcttcttctctcttcttct
tcttcttcttcttcttcttctcttctcttcttcttcttcatcttcttcct
cttcctcttcctcttcctctccttcctcttcctcttcctcctcctccctc
ctcctcttcctctcttcctgttcttctcctcttcttcttctcttctctcc
ctcctcctcttctctctcaacgtctcctc
gaattcactctgtagaccaggcctccctggaactcacagagatccacttg
gctctgcctccagagttctggaattaaaggtgagtatcactgcccgaaaa
aaacaactgttttttagaaaggtaagagctttgtactctgtatagccgtt
gtacccctcccatcctacaaaaatggacagtcattcatttgtgttgtcgg
agaggatcttggatgtgagattttaagagctaggagtaacaattgtatta
caaaattgagcctgttgtaagactttttcagttttcattcagtaatgact
tcgaacttttgaatgctataggtatcaaaagtgttcctctaacttcagtt
tgtctgtttggtttttgttttgttttgagacagggtctcactatgtggac
tagatctctagagagctaagtgcttttgcccctcaggtactgactgggat
taaaggtgtgcacctctctgcccagcagtggctcagtttcaactaaacag
gtctaggagtattttaaccctagcgagctttccccttcccccaaacaccg
tgctttgttatttcctttgccgcagacacctttgctcaccctttgcttac
cctatggtgtgaacaattaactctgggcttccccttccattgctggtgta
gaaaggatttcctgtagaaccagacccttatctgagatttcacaactgtt
cagagatgtgggaagctgaagagagctctggcagcagctttcccctcttt
gggtcatacctcttggccccttgtctgccttactgtgcctgccttcatgg
taccatgttggacatttcccagtatgggagccacatgggccatgctgcag
agagacagatgggacagagagacagcagagatgataattctgctgtgagc
acacgttcagaagggctgccgggggcccgtgtcccctctcttttttcttt
agatgattatctatttagtgtatgaatatttgcctgaatctatgtttgat
acaggtgtgtgccttggtgcctgcgaggcctaaagaaggggtcagaatat
ccacacggtgtgtagccacttggtggtgcttagaatcgaacaagttcctg
gagagacagtcaagctctagctgtgagccatctcagccaagtgttcttgg
gtgtgtgctgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_46828387_46829376
seq2: B6Ng01-091J15.b_45_1008 (reverse)

seq1  GAGAAGAGGAGGAGGAGGAAGAGGAGGAGGGGAGGAGGAAGAGGAAGAAG  50
                    || ||||||||||| |||||   ||||| |||||||
seq2  --------------GA-GAAGAGGAGGA-GGGAG--AGAAGA-GAAGAAG  31

seq1  AAGGAGGAGGAAGAACAGGAAGAGGAGGAAGAGGAGGAGGGGAGGAGGAG  100
      || ||||| |||||||||||||| |||||||||||||| |||||||||||
seq2  AA-GAGGA-GAAGAACAGGAAGA-GAGGAAGAGGAGGA-GGGAGGAGGAG  77

seq1  GAAGAGGAAGAGGAAGGAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAGAGGAAGAGGAAGGAGAGGAAGAGGAAGAGGAAGAGGAAGAAGATGA  127

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  200
      ||||||||||| ||||| ||||||||||||||||||||||||||||||  
seq2  AGAAGAAGAAG-AGAAG-AGAAGAAGAAGAAGAAGAAGAAGAAGAAGA--  173

seq1  AAGAAGAAGAAGAAATAACCCTTCAGCTTAGTAATAATTAAAATCAACAG  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAGAAGAAATAACCCTTCAGCTTAGTAATAATTAAAATCAACAG  223

seq1  TACCTTAGAGGAACTGGAAAGTGCAAAAGTCTGAGCTTGCATTTTGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAGAGGAACTGGAAAGTGCAAAAGTCTGAGCTTGCATTTTGTGAG  273

seq1  TGTTTTGTCTGTGCCTGGGGAGCAGGGTGGGCTGACAGTTATCTTTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTCTGTGCCTGGGGAGCAGGGTGGGCTGACAGTTATCTTTTACC  323

seq1  TTCATCCTCAGAAGAGATGAATCAGAGGCCATGGGAGTGAGCTAAGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTCAGAAGAGATGAATCAGAGGCCATGGGAGTGAGCTAAGCTAG  373

seq1  AGTGAAAGAAACCCAGGTTCCAACTCAGGTGTCTGAGGCATGCAGGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAGAAACCCAGGTTCCAACTCAGGTGTCTGAGGCATGCAGGTGTG  423

seq1  ACTCTCACAGGAGGCTTCAGATTCATACATTTAGGCTATGGAATTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCACAGGAGGCTTCAGATTCATACATTTAGGCTATGGAATTTTTTC  473

seq1  TTCTGTCCATCCCAATCTTACCTGCTCATCTTCACCCCACCAAATGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCATCCCAATCTTACCTGCTCATCTTCACCCCACCAAATGGAGG  523

seq1  TTGGGAACAAATTCTTGATGTAGTCCAGGCTGGCCTCGAACCTGCTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACAAATTCTTGATGTAGTCCAGGCTGGCCTCGAACCTGCTATAT  573

seq1  AACCAAAGATGACTGTGTACTGGTGGTTTTTCTGTGTCTCTCACAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGATGACTGTGTACTGGTGGTTTTTCTGTGTCTCTCACAAGTGT  623

seq1  TAGGGTTAGGGGTGTATATGGCCAAGCCTGGATTTATCGGGGGGGGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTAGGGGTGTATATGGCCAAGCCTGGATTTATCGGGGGGGGGGGG  673

seq1  GCTGAGAACTAAACCTAGAGATTCACAGATACCAGGAAAACACTGCCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAACTAAACCTAGAGATTCACAGATACCAGGAAAACACTGCCAAT  723

seq1  CGAGCTACATCCCCAGCCTCTGGGAACGTAGTATTAAAAGGTGTGGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTACATCCCCAGCCTCTGGGAACGTAGTATTAAAAGGTGTGGGACA  773

seq1  CTGATCGTCTGCCTGGCCCTTACTCTAGGGCTCAGACCAGAGCGAGTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCGTCTGCCTGGCCCTTACTCTAGGGCTCAGACCAGAGCGAGTAGT  823

seq1  GGATAGGAGAAAGCAGGCAGAGCAAGAAGAGGC-GGGGGGGGGGGGCATT  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGATAGGAGAAAGCAGGCAGAGCAAGAAGAGGCGGGGGGGGGGGGGCATT  873

seq1  TTTAGGTGTCGTTAGGGTGTTTTCTCATATACTCATTTCCTTTTGGGTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTGTCGTTAGGGTGTTTTCTCATATACTCATTTCCTTTTGGGTAG  923

seq1  TTGAAGACTAGATTTCAGGAAAGGCTAGCTGTAAAGAATTC  990
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACTAGATTTCAGGAAAGGCTAGCTGTAAAGAATTC  964

seq1: chr19_46687212_46688401
seq2: B6Ng01-091J15.g_67_1231

seq1  GAATTCACTCTGTAGACCAGGCCTCCCTGGAACTCACAGAGATCCACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCCTCCCTGGAACTCACAGAGATCCACTTG  50

seq1  GCTCTGCCTCCAGAGTTCTGGAATTAAAGGTGAGTATCACTGCCCGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTCCAGAGTTCTGGAATTAAAGGTGAGTATCACTGCCCGAAAA  100

seq1  AAACAACTGTTTTTTAGAAAGGTAAGAGCTTTGTACTCTGTATAGCCGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTGTTTTTTAGAAAGGTAAGAGCTTTGTACTCTGTATAGCCGTT  150

seq1  GTACCCCTCCCATCCTACAAAAATGGACAGTCATTCATTTGTGTTGTCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCCTCCCATCCTACAAAAATGGACAGTCATTCATTTGTGTTGTCGG  200

seq1  AGAGGATCTTGGATGTGAGATTTTAAGAGCTAGGAGTAACAATTGTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCTTGGATGTGAGATTTTAAGAGCTAGGAGTAACAATTGTATTA  250

seq1  CAAAATTGAGCCTGTTGTAAGACTTTTTCAGTTTTCATTCAGTAATGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGAGCCTGTTGTAAGACTTTTTCAGTTTTCATTCAGTAATGACT  300

seq1  TCGAACTTTTGAATGCTATAGGTATCAAAAGTGTTCCTCTAACTTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTTTTGAATGCTATAGGTATCAAAAGTGTTCCTCTAACTTCAGTT  350

seq1  TGTCTGTTTGGTTTTTGTTTTGTTTTGAGACAGGGTCTCACTATGTGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTGGTTTTTGTTTTGTTTTGAGACAGGGTCTCACTATGTGGAC  400

seq1  TAGATCTCTAGAGAGCTAAGTGCTTTTGCCCCTCAGGTACTGACTGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCTAGAGAGCTAAGTGCTTTTGCCCCTCAGGTACTGACTGGGAT  450

seq1  TAAAGGTGTGCACCTCTCTGCCCAGCAGTGGCTCAGTTTCAACTAAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGTGCACCTCTCTGCCCAGCAGTGGCTCAGTTTCAACTAAACAG  500

seq1  GTCTAGGAGTATTTTAACCCTAGCGAGCTTTCCCCTTCCCCCAAACACCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGAGTATTTTAACCCTAGCGAGCTTTCCCCTTCCCCCAAACACCG  550

seq1  TGCTTTGTTATTTCCTTTGCCGCAGACACCTTTGCTCACCCTTTGCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTTATTTCCTTTGCCGCAGACACCTTTGCTCACCCTTTGCTTAC  600

seq1  CCTATGGTGTGAACAATTAACTCTGGGCTTCCCCTTCCATTGCTGGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGTGTGAACAATTAACTCTGGGCTTCCCCTTCCATTGCTGGTGTA  650

seq1  GAAAGGATTTCCTGTAGAACCAGACCCTTATCTGAGATTTCACAACTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATTTCCTGTAGAACCAGACCCTTATCTGAGATTTCACAACTGTT  700

seq1  CAGAGATGTGGGAAGCTGAAGAGAGCTCTGGCAGCAGCTTTCCCCTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGTGGGAAGCTGAAGAGAGCTCTGGCAGCAGCTTTCCCCTCTTT  750

seq1  GGGTCATACCTCTTGGCCCCTTGTCTGCCTTACTGTGCCTGCCTTCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATACCTCTTGGCCCCTTGTCTGCCTTACTGTGCCTGCCTTCATGG  800

seq1  TACCATGTTGGACATTTCCCAGTATGGGAGCCACATGGGCCATGCTGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTTGGACATTTCCCAGTATGGGAGCCACATGGGCCATGCTGCAG  850

seq1  AGAGACAGATGGGACAGAGAGACAGCAGAGATGATAATTCTGCTGTGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGATGGGACAGAGAGACAGCAGAGATGATAATTCTGCTGTGAGC  900

seq1  ACACGTTCAGAAGGGGCTGCCGGGGGCCCGTGTCCCCCTCTCTTTTTTCT  950
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  ACACGTTCAGAA-GGGCTGCCGGGGGCCCGTGT-CCCCTCTCTTTTTTCT  948

seq1  TTAGATTGATTTATTCTTATTTAGTGTATGAATATTTGCCTGAATCTATG  1000
      ||||| ||| ||||   |||||||||||||||||||||||||||||||||
seq2  TTAGA-TGA-TTAT--CTATTTAGTGTATGAATATTTGCCTGAATCTATG  994

seq1  TTTGTATACCAGGTGTGTGCCTT-GTGCCTGCAGAGGCCTAAAGAAGGGG  1049
      |||| ||| |||||||||||||| |||||||| |||||||||||||||||
seq2  TTTG-ATA-CAGGTGTGTGCCTTGGTGCCTGC-GAGGCCTAAAGAAGGGG  1041

seq1  TCAG-ATATCCACACGGTTGTG-AGCCACCGTGTGTGGTTGCTAGAAATC  1097
      |||| |||||||||||| |||| ||||||  |  |||| ||||   ||||
seq2  TCAGAATATCCACACGG-TGTGTAGCCAC--TTGGTGG-TGCTTAGAATC  1087

seq1  GGAACCAGGTTCCCCTGGAAGGACAGTCAGGGCTCTTAGCCTGTAGGCCA  1147
      |  | || |||  ||||||  ||||||||  |||| ||| ||||  ||||
seq2  G--AACAAGTT--CCTGGAGAGACAGTCA-AGCTC-TAG-CTGTGAGCCA  1130

seq1  TCTCCAGCCACATTGTTGTTCTTGGTGTGTGTGTGCTGTGTGT  1190
      ||| ||||||      |||||||||   |||||||||||||||
seq2  TCT-CAGCCA----AGTGTTCTTGG---GTGTGTGCTGTGTGT  1165