BAC Information

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BAC

Clone NameB6Ng01-092C14
Chromosome19 (Build37)
Map Location 16,227,636 - 16,367,433
singlet/doubletdoublet
Overlap geneGnaq, E030024N20Rik, LOC624438
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048
Downstream geneGna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092C14.bB6Ng01-092C14.g
ACCDH903998DH903999
length1,1281,099
definitionDH903998|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C14, 5' end.DH903999|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,366,290 - 16,367,433)(16,227,636 - 16,228,761)
sequence
gaattcatcttaatacttctaaatacagaattcctttctttcaaaaaaat
aagtcagcatgtcagcaggtaggtgcaagctactaaccacgctttccttc
ttgaatatacgtgtggtgcagataatgtattgatattaagatgcatgtat
gcatgtatgacatattgaagctgggatggtagctcagtgcccttgggagg
ctgagggaggggaaacattgtgagtcagggcagcctgggctagtgcactc
caggatgcctgaactatagactgaaaggataaatgaccagctttcaacta
ggcatttacaggcgaagtcaggaaatgtcttaggctttagggcagatgtt
atttgagccaaccttacagttggcaggaacgctttctctgtctttcagct
ctaggtcctaactcctagtcttcctttccctttatggaaagcatcagaga
aaacctgaggaaagcaggggaaggagcagactggacactaagcacattag
catgaactgcaccaaccgctccaggaaagtaggaggacagcaggagaaat
gccagtggctggacccacatcactgcacacaggcccaggcaacacacaca
cacaaaaatcagtaatatttcagcccccctgggagttgatatgctggctt
attaaaaaaaaaagttgggggaggggtgaaccaccattctacacagagca
cacagcttagagaaccctggctgctctgtggtaagagcaggtgttaaatc
agatgctgggagctgtcaagtaaaaaattacccagcatctcactgtgggg
tcagattctgcactgacatgtgctgctaggggcaatgggaagaaagcctg
aggctctcagcatatatttaaaacagcatggtcaaactaaagtgatgaca
acagacaaccatcattctgcaattttcacacacaaacgtgtcaaatcact
gcattggtagaaatgtttctttcagcatatttctggaaaaggcattatgt
ttattctattgtcttttttctctttgcctccacttagctgcatccaggac
tctggagtctacaatagtcattagacttctttgctaagaagtattaaggt
tgaccatgataataagtattttagatct
gaattccactgcgttccaaatccaaagtccctaaatccacattctttcaa
ataaaagtatggtcaggcctatcacagcaataccccagtccctgatacca
acttctgtcttagttagggttttactgctgtgaacagacaccacgaccaa
ggaaagtcttataaaaaaaacaacatttaattggggctggcttacaggtt
cagaggttcagtccattatcatcagggttggagcatggcagcatccattc
aggcatggcacaggcagagctgagagttctacatcttcatccaaaggctg
ctagtagaagactctcttcagtgccttctgtctggattctgaaggctctg
aaacttgcctgcagtctgtgctgtcttcagtatttggaagatgattaaaa
aaaaaattcttgccgggcagtggtggcgtatgcctgtaatcccagcactc
ggaaggcagaggcaggtggatttctgagttcgaggccagcctggtctaca
aagtgagttccaggacagccagagctatacagagaaaccctgtctcaaaa
aaccaaaaaaaaaaaaaaaaaaaaaaaaaaagaactgtttaacactttga
tttcatattgaatactgagatcagcaggagaaatattgcaagttaagact
aaagaactttatgcaggtagtagaacatattgcttgtttttttgtttctt
tcggaagttttattatatgtctattttgtgtgtattaaaacatttagcat
aagttctgtgtttaattgaatatactctctatctcccagtactagggatt
tgaatctagggacttgtgcatgctagtaggcactccgtctgtcaccccca
gacttcacatagtgtttgagttcaaatcccagcacacatggtggctcaca
accacccgctctcttctggtgtgtctgaagacagctacaggtgtacttac
tgagttgagtcagcaactggagcgggtaagttctaaattcatcccacact
agatgatgctcccacattctgacacgctacgtgtgactcattattaaaaa
aaaaaacttaaagaaattaaggttcatggatgaagtttacatgatttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16366290_16367433
seq2: B6Ng01-092C14.b_44_1171 (reverse)

seq1  AGATCTTAAAATACTAATTTATCAATGGTACAACTTTAATACATCTATAG  50
      ||||| ||||||||| | ||||| ||||| |||| ||||||| ||| |||
seq2  AGATC-TAAAATACTTA-TTATC-ATGGT-CAACCTTAATACTTCT-TAG  45

seq1  CAAAGAAGTCTAATGACTATTGTAGACTCCAGAGTCTGGGATGCAGCTAA  100
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  CAAAGAAGTCTAATGACTATTGTAGACTCCAGAGTCCTGGATGCAGCTAA  95

seq1  GTTGGAGGCAAAGAGGAAAAAAGACATTAGAATAAAACATAATGCCTTTT  150
      | |||||||||||| ||||||||||| |||||| ||||||||||||||||
seq2  G-TGGAGGCAAAGA-GAAAAAAGACAATAGAAT-AAACATAATGCCTTTT  142

seq1  CCAGGAAATATGCTTGAAAGAAACATTTCTACCAAATTGCAGTGATTTTG  200
      ||| ||||||||| |||||||||||||||||||||  |||||||| ||||
seq2  CCA-GAAATATGC-TGAAAGAAACATTTCTACCAA--TGCAGTGA-TTTG  187

seq1  ACACGTTTTGTGTGTGAAAATTGCAGAATGATGGTTGTTCTGTTGTCATT  250
      ||||| ||||||||||||||||||||||||||||||| |||||||||| |
seq2  ACACG-TTTGTGTGTGAAAATTGCAGAATGATGGTTG-TCTGTTGTCA-T  234

seq1  CACTTTAGTTTGACCATGCTGTTTTAAATATATGCTGAGAGCCTCAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAGTTTGACCATGCTGTTTTAAATATATGCTGAGAGCCTCAGGCT  284

seq1  TTCTTCCCATTGCCCCTAGCAGCACATGTCAGTGCAGAATCTGACCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCATTGCCCCTAGCAGCACATGTCAGTGCAGAATCTGACCCCAC  334

seq1  AGTGAGATGCTGGGTAATTTTTTACTTGACAGCTCCCAGCATCTGATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATGCTGGGTAATTTTTTACTTGACAGCTCCCAGCATCTGATTTA  384

seq1  ACACCTGCTCTTACCACAGAGCAGCCAGGGTTCTCTAAGCTGTGTGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGCTCTTACCACAGAGCAGCCAGGGTTCTCTAAGCTGTGTGCTCT  434

seq1  GTGTAGAATGGTGGTTCACCCCTCCCCCAACTTTTTTTTTTAATAAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAATGGTGGTTCACCCCTCCCCCAACTTTTTTTTTTAATAAGCCA  484

seq1  GCATATCAACTCCCAGGGGGGCTGAAATATTACTGATTTTTGTGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCAACTCCCAGGGGGGCTGAAATATTACTGATTTTTGTGTGTGTG  534

seq1  TGTTGCCTGGGCCTGTGTGCAGTGATGTGGGTCCAGCCACTGGCATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTGGGCCTGTGTGCAGTGATGTGGGTCCAGCCACTGGCATTTCT  584

seq1  CCTGCTGTCCTCCTACTTTCCTGGAGCGGTTGGTGCAGTTCATGCTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTCCTCCTACTTTCCTGGAGCGGTTGGTGCAGTTCATGCTAATG  634

seq1  TGCTTAGTGTCCAGTCTGCTCCTTCCCCTGCTTTCCTCAGGTTTTCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGTGTCCAGTCTGCTCCTTCCCCTGCTTTCCTCAGGTTTTCTCTG  684

seq1  ATGCTTTCCATAAAGGGAAAGGAAGACTAGGAGTTAGGACCTAGAGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCCATAAAGGGAAAGGAAGACTAGGAGTTAGGACCTAGAGCTGA  734

seq1  AAGACAGAGAAAGCGTTCCTGCCAACTGTAAGGTTGGCTCAAATAACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGAAAGCGTTCCTGCCAACTGTAAGGTTGGCTCAAATAACATC  784

seq1  TGCCCTAAAGCCTAAGACATTTCCTGACTTCGCCTGTAAATGCCTAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAAAGCCTAAGACATTTCCTGACTTCGCCTGTAAATGCCTAGTTG  834

seq1  AAAGCTGGTCATTTATCCTTTCAGTCTATAGTTCAGGCATCCTGGAGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGTCATTTATCCTTTCAGTCTATAGTTCAGGCATCCTGGAGTGC  884

seq1  ACTAGCCCAGGCTGCCCTGACTCACAATGTTTCCCCTCCCTCAGCCTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCCAGGCTGCCCTGACTCACAATGTTTCCCCTCCCTCAGCCTCCC  934

seq1  AAGGGCACTGAGCTACCATCCCAGCTTCAATATGTCATACATGCATACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACTGAGCTACCATCCCAGCTTCAATATGTCATACATGCATACAT  984

seq1  GCATCTTAATATCAATACATTATCTGCACCACACGTATATTCAAGAAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTAATATCAATACATTATCTGCACCACACGTATATTCAAGAAGGA  1034

seq1  AAGCGTGGTTAGTAGCTTGCACCTACCTGCTGACATGCTGACTTATTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTGGTTAGTAGCTTGCACCTACCTGCTGACATGCTGACTTATTTTT  1084

seq1  TTGAAAGAAAGGAATTCTGTATTTAGAAGTATTAAGATGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAAAGGAATTCTGTATTTAGAAGTATTAAGATGAATTC  1128

seq1: chr19_16227636_16228761
seq2: B6Ng01-092C14.g_69_1167

seq1  GAATTCCACTGCGTTCCAAATCCAAAGTCCCTAAATCCACATTCTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGCGTTCCAAATCCAAAGTCCCTAAATCCACATTCTTTCAA  50

seq1  ATAAAAGTATGGTCAGGCCTATCACAGCAATACCCCAGTCCCTGATACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTATGGTCAGGCCTATCACAGCAATACCCCAGTCCCTGATACCA  100

seq1  ACTTCTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCACGACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCACGACCAA  150

seq1  GGAAAGTCTTATAAAAAAAACAACATTTAATTGGGGCTGGCTTACAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCTTATAAAAAAAACAACATTTAATTGGGGCTGGCTTACAGGTT  200

seq1  CAGAGGTTCAGTCCATTATCATCAGGGTTGGAGCATGGCAGCATCCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTCAGTCCATTATCATCAGGGTTGGAGCATGGCAGCATCCATTC  250

seq1  AGGCATGGCACAGGCAGAGCTGAGAGTTCTACATCTTCATCCAAAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGCACAGGCAGAGCTGAGAGTTCTACATCTTCATCCAAAGGCTG  300

seq1  CTAGTAGAAGACTCTCTTCAGTGCCTTCTGTCTGGATTCTGAAGGCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGAAGACTCTCTTCAGTGCCTTCTGTCTGGATTCTGAAGGCTCTG  350

seq1  AAACTTGCCTGCAGTCTGTGCTGTCTTCAGTATTTGGAAGATGATTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGCCTGCAGTCTGTGCTGTCTTCAGTATTTGGAAGATGATTAAAA  400

seq1  AAAAAATTCTTGCCGGGCAGTGGTGGCGTATGCCTGTAATCCCAGCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCTTGCCGGGCAGTGGTGGCGTATGCCTGTAATCCCAGCACTC  450

seq1  GGAAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  500

seq1  AAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCAAAA  550

seq1  AACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTGTTTAACACTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTGTTTAACACTTTGA  600

seq1  TTTCATATTGAATACTGAGATCAGCAGGAGAAATATTGCAAGTTAAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTGAATACTGAGATCAGCAGGAGAAATATTGCAAGTTAAGACT  650

seq1  AAAGAACTTTATGCAGGTAGTAGAACATATTGCTTGTTTTTTTGTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTTTATGCAGGTAGTAGAACATATTGCTTGTTTTTTTGTTTCTT  700

seq1  TCGGAAGTTTTATTATATGTCTATTTTGTGTGTATTAAAACATTTAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGTTTTATTATATGTCTATTTTGTGTGTATTAAAACATTTAGCAT  750

seq1  AAGTTCTGTGTTTAAATGAATATACTCTCTATCTCCCAGTACTAGGGATT  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGTGTTTAATTGAATATACTCTCTATCTCCCAGTACTAGGGATT  800

seq1  TGAATCTAGGGACTTGTGCATGCTAGGTAGGCACTCCGTCTGTCACCCCC  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAATCTAGGGACTTGTGCATGCTA-GTAGGCACTCCGTCTGTCACCCCC  849

seq1  AGACTTCACATAGGTGTTTGAGTTCAAATCCCAGCAACCACATGGTGGCT  900
      |||||||||||| |||||||||||||||||||||||  ||||||||||||
seq2  AGACTTCACATA-GTGTTTGAGTTCAAATCCCAGCA--CACATGGTGGCT  896

seq1  CACAACCACCCGCCCTCTTCTGGTGTGTCTGAAGACAGCTACA-GTGTAC  949
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  CACAACCACCCGCTCTCTTCTGGTGTGTCTGAAGACAGCTACAGGTGTAC  946

seq1  TTACTGAG-TGAGTCAGGCCAACTGGAGCGAGTAGAGTCCTAAATTCAAT  998
      |||||||| ||||||||  ||||||||||| ||| ||| |||||||||  
seq2  TTACTGAGTTGAGTCAG--CAACTGGAGCGGGTA-AGTTCTAAATTCA--  991

seq1  TCCCAACAACTAGATGAAGGCTCACAACCATCTGTACA-GCTACAGTGTG  1047
      |||||   |||||||| | |||| | ||  |||| ||| ||||| |||||
seq2  TCCCA--CACTAGATG-ATGCTC-CCACATTCTG-ACACGCTAC-GTGTG  1035

seq1  TACTCATATATATTAAAAAAAAATAAATCTTTAAAGAAAATTAAAGTGTT  1097
       ||||||   ||||||||||||| |     |||||| |||||||   |||
seq2  -ACTCAT---TATTAAAAAAAAAAA----CTTAAAG-AAATTAA--GGTT  1074

seq1  CATGGATGAAGTATTTACCACTGATTTGC  1126
      |||||||||||  |||||   ||||||||
seq2  CATGGATGAAG--TTTAC--ATGATTTGC  1099