BAC Information

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BAC

Clone NameB6Ng01-093H23
Chromosome19 (Build37)
Map Location 47,434,593 - 47,571,428
singlet/doubletdoublet
Overlap geneSh3pxd2a
Upstream geneTmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070
Downstream geneObfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576, Sorcs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093H23.bB6Ng01-093H23.g
ACCDH904970DH904971
length1,229147
definitionDH904970|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H23, 5' end.DH904971|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,434,593 - 47,435,835)(47,571,282 - 47,571,428)
sequence
gaattccctctcgttttaagtgagggttttaaatttaaacactctaaaat
cttattcatctatttgtgtgggcgggcgacgtgccacggcgcatgtgcgg
cgcttagaggacaacgtgtgggagtcagttcccgctttcctccccgtggg
tccccagactgaactccggtctccaggtttgagggcgaccacctttcccc
accgagacaccttgctgatccacagttcctcccttccttctggagtcagg
gcctcatgcagcccaggctgtccttgaactcacactggagcagtgtgagg
agactcaaacctgaagcttcatgcaagcttgtggagcagggagctgcgtg
cctagtgccaagcactgctcatgatctgcagtccttctctcctcacccca
agtcccacatggctcccccagagtccacgcagatggactgagatgtcccg
tcatgagactttctggcccactaacctcttgtgactattaggcaaagggc
ctggcccagggaggagaggtctgatgtagacctgctctcaggcctctaag
gtagcatgcaggagttttaagatctatctatctccctgcttcttggctgt
atggactgggactttggattcaccatctgctaactaggatgtaagactct
tcctcaggtggcctgagacataaatgacaaaataatgtgtagaattcaca
gagtgaggccagcgaggcggacactcttcaatttctgctctcctctcttc
tcaggatgtatacacacacatgtgtatgcatacatacatacatacataca
tacacacacacacacacacacacacacacacacacacgcatatgtgtgga
tacacacacatacacacacacatacaccttttttatatgctagcattcca
agaacacagctacagataggcatatcagttaaattcaatatgacaacatt
aggcggtaaggccttaggagatattagcccagaagagggagcctgcatgg
acaggacagaatcttctaagagagctctaggtggggcactggagaaacag
ctcagaggttaaagcactgcctgtttctttcaaagacctccggttcaatt
ctcagcacctacatggcactccccactcttaatacctcctgcttcctgaa
tctgaataccttacatggacatatatgagagcactcatggccttaataaa
gaaatgtaatataagacagagcagggcgc
caaatctgtccccaaaggtctgtcatggtgaagtcaaatgcgacattttc
atttgagatcaggaagaggaaacttgcagatcacttgatggcttcggtat
gggattgttttttacatctatttggtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_47434593_47435835
seq2: B6Ng01-093H23.b_44_1272

seq1  GAATTCCCTCTCGTTTTAAGTGAGGGTTTTAAATTTAAACACTCTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTCGTTTTAAGTGAGGGTTTTAAATTTAAACACTCTAAAAT  50

seq1  CTTATTCATCTATTTGTGTGGGCGGGCGACGTGCCACGGCGCATGTGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCATCTATTTGTGTGGGCGGGCGACGTGCCACGGCGCATGTGCGG  100

seq1  CGCTTAGAGGACAACGTGTGGGAGTCAGTTCCCGCTTTCCTCCCCGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTAGAGGACAACGTGTGGGAGTCAGTTCCCGCTTTCCTCCCCGTGGG  150

seq1  TCCCCAGACTGAACTCCGGTCTCCAGGTTTGAGGGCGACCACCTTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGACTGAACTCCGGTCTCCAGGTTTGAGGGCGACCACCTTTCCCC  200

seq1  ACCGAGACACCTTGCTGATCCACAGTTCCTCCCTTCCTTCTGGAGTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGACACCTTGCTGATCCACAGTTCCTCCCTTCCTTCTGGAGTCAGG  250

seq1  GCCTCATGCAGCCCAGGCTGTCCTTGAACTCACACTGGAGCAGTGTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGCAGCCCAGGCTGTCCTTGAACTCACACTGGAGCAGTGTGAGG  300

seq1  AGACTCAAACCTGAAGCTTCATGCAAGCTTGTGGAGCAGGGAGCTGCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAACCTGAAGCTTCATGCAAGCTTGTGGAGCAGGGAGCTGCGTG  350

seq1  CCTAGTGCCAAGCACTGCTCATGATCTGCAGTCCTTCTCTCCTCACCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGCCAAGCACTGCTCATGATCTGCAGTCCTTCTCTCCTCACCCCA  400

seq1  AGTCCCACATGGCTCCCCCAGAGTCCACGCAGATGGACTGAGATGTCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCACATGGCTCCCCCAGAGTCCACGCAGATGGACTGAGATGTCCCG  450

seq1  TCATGAGACTTTCTGGCCCACTAACCTCTTGTGACTATTAGGCAAAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGACTTTCTGGCCCACTAACCTCTTGTGACTATTAGGCAAAGGGC  500

seq1  CTGGCCCAGGGAGGAGAGGTCTGATGTAGACCTGCTCTCAGGCCTCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCAGGGAGGAGAGGTCTGATGTAGACCTGCTCTCAGGCCTCTAAG  550

seq1  GTAGCATGCAGGAGTTTTAAGATCTATCTATCTCCCTGCTTCTTGGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATGCAGGAGTTTTAAGATCTATCTATCTCCCTGCTTCTTGGCTGT  600

seq1  ATGGACTGGGACTTTGGATTCACCATCTGCTAACTAGGATGTAAGACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGGGACTTTGGATTCACCATCTGCTAACTAGGATGTAAGACTCT  650

seq1  TCCTCAGGTGGCCTGAGACATAAATGACAAAATAATGTGTAGAATTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGTGGCCTGAGACATAAATGACAAAATAATGTGTAGAATTCACA  700

seq1  GAGTGAGGCCAGCGAGGCGGACACTCTTCAATTTCTGCTCTCCTCTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGCCAGCGAGGCGGACACTCTTCAATTTCTGCTCTCCTCTCTTC  750

seq1  TCAGGATGTATACACACACATGTGTATGCATACATACATACATACATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGTATACACACACATGTGTATGCATACATACATACATACATACA  800

seq1  TACACACACACACACACACACACACACACACACACACGCATATGTGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACACACACGCATATGTGTGGA  850

seq1  TACACACACATACACACACACATACACC-TTTTTATATGCTAGCATTCCA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TACACACACATACACACACACATACACCTTTTTTATATGCTAGCATTCCA  900

seq1  AGAACACAGCTACAGATAGGCATATCAGTTAAATTCAATATGACAACATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGCTACAGATAGGCATATCAGTTAAATTCAATATGACAACATT  950

seq1  AGGCGGTAAGGCCTTAGGAGATAATTAGCCCAGAAGAGGGAGCCTGCATG  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGCGGTAAGGCCTTAGGAGAT-ATTAGCCCAGAAGAGGGAGCCTGCATG  999

seq1  GACAGGACAGGAATCTTCTAAGAGAGC-CCAGGTGGGGGCACTGGAGAGA  1048
      ||||||||| ||||||||||||||||| | |||| ||||||||||||| |
seq2  GACAGGACA-GAATCTTCTAAGAGAGCTCTAGGT-GGGGCACTGGAGAAA  1047

seq1  CAGCTCAGAGGTTAAAAGCACTGGCTG-TTCTTCCAAAGGACCTCC-GTT  1096
      ||||||||||||| ||||||||| ||| ||||| |||| ||||||| |||
seq2  CAGCTCAGAGGTT-AAAGCACTGCCTGTTTCTTTCAAA-GACCTCCGGTT  1095

seq1  CAATTCTCAGCACCTACATGGCATCTCACAACTGTCTATAACTCCAGTTC  1146
      ||||||||||||||||||||||| ||| | ||| |  ||| |||| | | 
seq2  CAATTCTCAGCACCTACATGGCA-CTCCCCACTCTTAATACCTCCTGCTT  1144

seq1  CCAGGGATCTGATACCCTTACATGGACATATATGTAGGAAAAACCACCAG  1196
      ||  | ||||||   |||||||||||||||||||      | | |||   
seq2  CC-TGAATCTGAATACCTTACATGGACATATATG------AGAGCACTCA  1187

seq1  TGCACATAAAATAAAAAGAAATGGAATAATAAGACAGAGCAGGGCGC  1243
      ||  | ||    | ||||||||| ||| |||||||||||||||||||
seq2  TGGCCTTA----ATAAAGAAATGTAAT-ATAAGACAGAGCAGGGCGC  1229

seq1: chr19_47571282_47571428
seq2: B6Ng01-093H23.g_75_221 (reverse)

seq1  CACACACACACACACACACACACCAAATAGATGTAAAAAACAATCCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACCAAATAGATGTAAAAAACAATCCCATA  50

seq1  CCGAAGCCATCAAGTGATCTGCAAGTTTCCTCTTCCTGATCTCAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGCCATCAAGTGATCTGCAAGTTTCCTCTTCCTGATCTCAAATGAA  100

seq1  AATGTCGCATTTGACTTCACCATGACAGACCTTTGGGGACAGATTTG  147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCGCATTTGACTTCACCATGACAGACCTTTGGGGACAGATTTG  147