BAC Information

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BAC

Clone NameB6Ng01-094J01
Chromosome19 (Build37)
Map Location 19,886,700 - 20,013,593
singlet/doubletdoublet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094J01.bB6Ng01-094J01.g
ACCDH905749DH905750
length1,1221,064
definitionDH905749|Mus musculus domesticus DNA, BAC clone: B6Ng01-094J01, 5' end.DH905750|Mus musculus domesticus DNA, BAC clone: B6Ng01-094J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,886,700 - 19,887,834)(20,012,547 - 20,013,593)
sequence
gaattccatttgtcaaaaaaaataaataaaagcagacatctaataagtgg
gacctcataatattataacactcctgtacaatcaaggaactgaacatcaa
gcgaagaaaaaaagccaaagatcaggagagaatcattgccagctataaat
ctaacagagaattaatattctaaatatacaaagaaatgaaaaaatccaag
aactaaaaaaggctgggaatggaatccaagcagagttttcaaaagaagaa
ataaaaatggctaagaaataacccccaagaaagtgtttactagaaatcag
ttaaaagaattctccagaaactaaaactagatctaccatatggttcagct
gtaccattccttgtcatgtgcacaagggactcagcatactactttacaga
gtctttctcagcaccaattatattttttttatttattaagctctctagag
attattccattctaccctcaattcacattcttgtgactgaaaagttttcc
ttaatctctttaataaaaataccattttcttatttatttattattgttgt
ttatatgtgtactaagttactgtgtgcatgtctgccacatgtgaaatatt
aaggaacactttagtagagttccacattcccttcttctacagccctatgt
gtttcttaaagcctaattggtttgtcaggcttgggatcgaaaagttttac
ctactgaattatcattctatcccagaagtcatccttttgttgatctctct
ctgtgaccaacttttcaggaaaccttaaatataagtatctaaattatttg
ttcatgttgagatcattattaaaattaaagtttttaaattttagaataga
acttctaaaggagttcatacagattaacagtattccattcaagattctag
gcacaggagatatacagtacaagttcttagtatttgccaaatattgtgag
tattaagccatgcaaatatgatctgcttgttagaggagaacttttattta
tagtacttatatggagatgtttgacttacatttatacatatacatacata
tgcacaatctcagatgaaagtacttgctagactcgcatcttgacaaaaca
ttcagaaaggctttatttataa
gaattccatgtactacacagtcttaatctctcattcatactatgactcta
catttacacaagctccaacaattagaattccatctggacaatgtgcccag
gaaacaccttgagcttctggtgacatcatagtcccttcagtgcacatttc
agacaactcttttacaccagcccagcaaggctcacatggccatagggatt
atgctatgtatgttgccaggccttctctcactcttactttaatattgata
atgagtagaccctatgttgggcttagcctgattttaaagtgttaatttca
taggtagatatagccagtatccagtatcttaggactcaaaatgcaaatga
aactaaaattattgggattgttctttgcagctcagttggtaacacagaat
taatatcacagtcattcaaatccaaaatactgattttaattagaaaatat
ttaattacaaactgtatataaacacataaaattttattagatacagaact
cagattgctggcacccatgtgtgtatgtgcagacagtctgcatctgtaac
tatattaaaatggcaacatgttcatttaagctgaagattattttcaatcc
tgcatgaaattttgttgtcttgggcaaatctttcacaaatgccagttccc
aaggaaagtaaatgcatattcaaattctcttacatgagtttggaaatgga
acaaagacaacagaacagtataaaaatatccacacatgtatgatctatgt
gaagcaatactctagattgagtattctatatcttagaaggaatcaacata
tttgtaaaactgaagtgagaaatttcccttttaatatgttgcgctaagag
atagatgaaggtctggttactttttcaactcttttcttacaactgggcat
ttaaatttacattagatcctaagtcattcaccagaacaacaattcataaa
ttaataaatgtgctactctcaaatttaatgcaccatttggttgggaataa
tatctaatactcatttagaaattttttcagaaatttacagaaacacctta
tactcatacaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19886700_19887834
seq2: B6Ng01-094J01.b_42_1163

seq1  GAATTCCATTTGTCAAAAAAAATAAATAAAAGCAGACATCTAATAAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTGTCAAAAAAAATAAATAAAAGCAGACATCTAATAAGTGG  50

seq1  GACCTCATAATATTATAACACTCCTGTACAATCAAGGAACTGAACATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCATAATATTATAACACTCCTGTACAATCAAGGAACTGAACATCAA  100

seq1  GCGAAGAAAAAAAGCCAAAGATCAGGAGAGAATCATTGCCAGCTATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGAAAAAAAGCCAAAGATCAGGAGAGAATCATTGCCAGCTATAAAT  150

seq1  CTAACAGAGAATTAATATTCTAAATATACAAAGAAATGAAAAAATCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGAGAATTAATATTCTAAATATACAAAGAAATGAAAAAATCCAAG  200

seq1  AACTAAAAAAGGCTGGGAATGGAATCCAAGCAGAGTTTTCAAAAGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAAAGGCTGGGAATGGAATCCAAGCAGAGTTTTCAAAAGAAGAA  250

seq1  ATAAAAATGGCTAAGAAATAACCCCCAAGAAAGTGTTTACTAGAAATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGGCTAAGAAATAACCCCCAAGAAAGTGTTTACTAGAAATCAG  300

seq1  TTAAAAGAATTCTCCAGAAACTAAAACTAGATCTACCATATGGTTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAATTCTCCAGAAACTAAAACTAGATCTACCATATGGTTCAGCT  350

seq1  GTACCATTCCTTGTCATGTGCACAAGGGACTCAGCATACTACTTTACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATTCCTTGTCATGTGCACAAGGGACTCAGCATACTACTTTACAGA  400

seq1  GTCTTTCTCAGCACCAATTATATTTTTTTTATTTATTAAGCTCTCTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTCAGCACCAATTATATTTTTTTTATTTATTAAGCTCTCTAGAG  450

seq1  ATTATTCCATTCTACCCTCAATTCACATTCTTGTGACTGAAAAGTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCATTCTACCCTCAATTCACATTCTTGTGACTGAAAAGTTTTCC  500

seq1  TTAATCTCTTTAATAAAAATACCATTTTCTTATTTATTTATTATTGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCTTTAATAAAAATACCATTTTCTTATTTATTTATTATTGTTGT  550

seq1  TTATATGTGTACTAAGTTACTGTGTGCATGTCTGCCACATGTGAAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTGTACTAAGTTACTGTGTGCATGTCTGCCACATGTGAAATATT  600

seq1  AAGGAACACTTTAGTAGAGTTCCACATTCCCTTCTTCTACAGCCCTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACACTTTAGTAGAGTTCCACATTCCCTTCTTCTACAGCCCTATGT  650

seq1  GTTTCTTAAAGCCTAATTGGTTTGTCAGGCTTGGGATCGAAAAGTTTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTAAAGCCTAATTGGTTTGTCAGGCTTGGGATCGAAAAGTTTTAC  700

seq1  CTACTGAATTATCATTCTATCCCAGAAGTCATCCTTTTGTTGATCTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAATTATCATTCTATCCCAGAAGTCATCCTTTTGTTGATCTCTCT  750

seq1  CTGTGACCAACTTTTCAGGAAACCTTAAATATAAGTATCTAAATTATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCAACTTTTCAGGAAACCTTAAATATAAGTATCTAAATTATTTG  800

seq1  TTCATGTTGAGATCATTATTAAAATTAAAGTTTTTAAATTTTAGAATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTGAGATCATTATTAAAATTAAAGTTTTTAAATTTTAGAATAGA  850

seq1  ACTTCTAAAGGAGTTCATACAGATTAACAGTATTCCATTCAAGATTCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAAAGGAGTTCATACAGATTAACAGTATTCCATTCAAGATTCTAG  900

seq1  GCACAGGAGATATACAGTACAAGTTCTTAGTATTTGCCAAATATTGTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGAGATATACAGTACAAGTTCTTAGTATTTGCCAAATATTGTGAG  950

seq1  TATTAAGCCATGCAAATATGATCTGCTTGTTAGAGGAGAACTTTTATTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCCATGCAAATATGATCTGCTTGTTAGAGGAGAACTTTTATTTA  1000

seq1  ATTAAGTACTTATATGGAGATGTTTGACTTACATTTATACATATAAACAT  1050
          ||||||||||||||||||||||||||||||||||||||||  ||||
seq2  ---TAGTACTTATATGGAGATGTTTGACTTACATTTATACATAT--ACAT  1045

seq1  ACATAAATGCACAAATCTCAAGAATGAAAGTACTTGCTTAGACTCCGCAA  1100
      ||||  |||||| |||||||   |||||||||||||| |||||| |||| 
seq2  ACAT--ATGCAC-AATCTCA--GATGAAAGTACTTGC-TAGACT-CGCAT  1088

seq1  TCTGAACAAACATTCAGAGAAGCCTTTATTTATAA  1135
        |||  ||||||||||| ||| ||||||||||||
seq2  CTTGACAAAACATTCAGA-AAGGCTTTATTTATAA  1122

seq1: chr19_20012547_20013593
seq2: B6Ng01-094J01.g_69_1132 (reverse)

seq1  GATTT-TATGAGTTATATGTGTTTCTGTATATTTCTGAAAAAATATCTAA  49
      ||||| |||||||   | ||||||||||| |||||||||||||| |||||
seq2  GATTTGTATGAGTATAAGGTGTTTCTGTAAATTTCTGAAAAAATTTCTAA  50

seq1  ATGAGTATTAGATATTAT--CCAACAAAAT-GTGCATT-AATTTGAGAGA  95
      ||||||||||||||||||  ||||| |||| ||||||| |||||||||| 
seq2  ATGAGTATTAGATATTATTCCCAACCAAATGGTGCATTAAATTTGAGAG-  99

seq1  TAGCACATTTATTAA-TTATGAAATGTTG-TCT-GTGAATGACTTAGGAT  142
      ||||||||||||||| ||||||| ||||| ||| ||||||||||||||||
seq2  TAGCACATTTATTAATTTATGAATTGTTGTTCTGGTGAATGACTTAGGAT  149

seq1  CT-ATGTAATTTTAAATG-CCAGTTGTAAG-AAAGAGTTG-AAAAGTAAC  188
      || |||||| |||||||| ||||||||||| ||||||||| |||||||||
seq2  CTAATGTAAATTTAAATGCCCAGTTGTAAGAAAAGAGTTGAAAAAGTAAC  199

seq1  CAGAACTTCATCTATCTCTTAGCGCAACATATT-AAAGGGAAA-TTCTCA  236
      |||| |||||||||||||||||||||||||||| ||||||||| ||||||
seq2  CAGACCTTCATCTATCTCTTAGCGCAACATATTAAAAGGGAAATTTCTCA  249

seq1  C-TCAGTTTTAC-AATATGTTGATTCCTTCTAAGATATAGAATACTCAAT  284
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTTTACAAATATGTTGATTCCTTCTAAGATATAGAATACTCAAT  299

seq1  CTAGAGTATTGCTTCACATAGATCATACATGTGTGGATATTTTTATACTG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTATTGCTTCACATAGATCATACATGTGTGGATATTTTTATACTG  349

seq1  TTCTGTTGTCTTTGTTCCATTTCCAAACTCATGTAAGAGAATTTGAATAT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGTCTTTGTTCCATTTCCAAACTCATGTAAGAGAATTTGAATAT  399

seq1  GCATTTACTTTCCTTGGGAACTGGCATTTGTG-AAGATTTGCCCAAGACA  433
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCATTTACTTTCCTTGGGAACTGGCATTTGTGAAAGATTTGCCCAAGACA  449

seq1  AC-AAATTTCATGCAGGATTGAAAATAATCTTCAGCTTAAATGAACATGT  482
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTTCATGCAGGATTGAAAATAATCTTCAGCTTAAATGAACATGT  499

seq1  TGCCATTTTAATATAGTTACAGATGCAGACTGTCTGCACATACACACATG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTAATATAGTTACAGATGCAGACTGTCTGCACATACACACATG  549

seq1  GGTGCCAGCAATCTGAGTTCTGTATCTAATAAAATTTTATGTGTTTATAT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAGCAATCTGAGTTCTGTATCTAATAAAATTTTATGTGTTTATAT  599

seq1  ACAGTTTGTAATTAAATATTTTCTAATTAAAATCAGTATTTTGGATTTGA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGTAATTAAATATTTTCTAATTAAAATCAGTATTTTGGATTTGA  649

seq1  ATGACTGTGATATTAATTCTGTGTTACCAACTGAGCTGCAAAGAACAATC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTGATATTAATTCTGTGTTACCAACTGAGCTGCAAAGAACAATC  699

seq1  CCAATAATTTTAGTTTCATTTGCATTTTGAGTCCTAAGATACTGGATACT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATTTTAGTTTCATTTGCATTTTGAGTCCTAAGATACTGGATACT  749

seq1  GGCTATATCTACCTATGAAATTAACACTTTAAAATCAGGCTAAGCCCAAC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATCTACCTATGAAATTAACACTTTAAAATCAGGCTAAGCCCAAC  799

seq1  ATAGGGTCTACTCATTATCAATATTAAAGTAAGAGTGAGAGAAGGCCTGG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTCTACTCATTATCAATATTAAAGTAAGAGTGAGAGAAGGCCTGG  849

seq1  CAACATACATAGCATAATCCCTATGGCCATGTGAGCCTTGCTGGGCTGGT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATACATAGCATAATCCCTATGGCCATGTGAGCCTTGCTGGGCTGGT  899

seq1  GTAAAAGAGTTGTCTGAAATGTGCACTGAAGGGACTATGATGTCACCAGA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGAGTTGTCTGAAATGTGCACTGAAGGGACTATGATGTCACCAGA  949

seq1  AGCTCAAGGTGTTTCCTGGGCACATTGTCCAGATGGAATTCTAATTGTTG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGGTGTTTCCTGGGCACATTGTCCAGATGGAATTCTAATTGTTG  999

seq1  GAGCTTGTGTAAATGTAGAGTCATAGTATGAATGAGAGATTAAGACTGTG  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTGTAAATGTAGAGTCATAGTATGAATGAGAGATTAAGACTGTG  1049

seq1  TAGTACATGGAATTC  1047
      |||||||||||||||
seq2  TAGTACATGGAATTC  1064