BAC Information

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BAC

Clone NameB6Ng01-094O12
Chromosome19 (Build37)
Map Location 45,433,547 - 45,491,421
singlet/doubletdoublet
Overlap geneBtrc
Upstream geneScd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
Downstream geneEG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094O12.bB6Ng01-094O12.g
ACCDH905995DH905996
length1,113538
definitionDH905995|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O12, 5' end.DH905996|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,490,300 - 45,491,421)(45,433,547 - 45,434,090)
sequence
gaattcagcatcatgtgcctatcaaagttcaaatccaccctgagatccct
gagaatcttcacccctcccccacacttgactcctaaagtaaggccccatc
ctcttcgatgataaaggccctgcaggcaaagggctggcctcagcattcac
tatatgaaagctgaatggcaaaaatctcctaaactcaggtccctgttggt
caacttctaggagtaatagaggctataataatcaacaataaaaagatagc
tgcattgagagtttatgtatccttaagccatggtaaagaattccctttcc
actactatatcaactaaaaaaattcaggccaagagaaatgcagtattcca
tattccttgcaaggcactcaggctctaacttacaaagtcaatgtttgcct
tcaaatatcacatttatttaattacttatttattgtgagagagtttgtat
gccatgttgcacatgtggagggcagaggagctcttagggagaatcaatct
gcgcgtctactgtgtggtcctggtcaggatgtcaggccttagctgctgag
ccatctcacttgccaatccatcattagccacatttaagaagtctgtttac
acatctttaatctcagcactggggaggcagaggcaggtggatttctgagt
tcgaggccagcctggtctacagagtgagttccaggacagccagggctaca
cagagaaaccctgtctcaaaaacaaaacaaaacaaaacaaaacaaaacaa
accccaacagcttccaagaatgccaattccattacacactgctctggtaa
gagtgtggacgagcgtccacagctgcggcaagttcatccaccatacaatg
actcctcacgggtgcaggtacaggagagcactaaagtttaccagacagaa
attgtttactaaaaaaactgtgttttcctaccaaattgtttcatttaaaa
gtcatcactgtctgtatacagaatgctgcactgagtaatggcaatggcag
acatgagacgtcagtgtgtccctccaggtcaacccactctcacactgctc
acacaccaattattctgtgcctgtcctcctcagtctccttgcctcaactg
tctggtctgtgtc
cttatcctaaacaaaaatgttatagtatttggtagaaaagactcatactt
atttcggaatgccaggaacctctctcttggttggatgagtccctgggcaa
tctgaacagctaatttcagctcaaagacagagccaagaagtgtatttggt
gtatatttgatgtaccctgatgaatatcatctaaagtcctcttctttttc
tgctctccacccccaacccctgaccccagccttggcagttggcttcccaa
taagcctttctttctacctatggaatagcttggcggattcactgtatgag
attctgtctaaaagaaacaagcgataagtgaaccttttgaaagaggattg
gagctgggtggtggtagtgcataacttcatcccagcacttgggaggcaga
ggtagagagagagaggcagagaggcagagagagaggcagagagagagagg
ggcagagagagagagagaggcagagagagaggcagagaaagagagaggca
gagagagagagagagagaggcaggcaggtgtttgagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45490300_45491421
seq2: B6Ng01-094O12.b_48_1160 (reverse)

seq1  GACACAGAAACAGACAGATGAGGCAGAGAGACTGAGAGAGGACAGGGCAC  50
      ||||||| | ||||||| |||||||  ||||||||| ||||||| |||||
seq2  GACACAG-ACCAGACAGTTGAGGCAAGGAGACTGAG-GAGGACA-GGCAC  47

seq1  AGAATTAAATGGTGTGTGAGCAGTGTGAGAGTGGGTTGAACCTGGAGGGA  100
      |||| ||| ||||||||||||||||||||||||||||| |||||||||||
seq2  AGAA-TAATTGGTGTGTGAGCAGTGTGAGAGTGGGTTG-ACCTGGAGGGA  95

seq1  CACACTGACGTCTCATGTCTGCCATTGCCATTTACTCAGTGCAGCATTCT  150
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACACTGACGTCTCATGTCTGCCATTGCCA-TTACTCAGTGCAGCATTCT  144

seq1  GTATACAGAACAGTGATGACTTTTTAAATGAAACAATTTGGTAGGAAAAC  200
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  GTATACAG-ACAGTGATGAC-TTTTAAATGAAACAATTTGGTAGGAAAAC  192

seq1  ACAGTTTTTTTTAGTAAACAATTTCTGTCTGGTAAACTTTAGTGCTCTCC  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAG-TTTTTTTAGTAAACAATTTCTGTCTGGTAAACTTTAGTGCTCTCC  241

seq1  TGTACCTGCACCCGTGAGGAGTCATTGTATGGTGGATGAACTTGCCGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGCACCCGTGAGGAGTCATTGTATGGTGGATGAACTTGCCGCAG  291

seq1  CTGTGGACGCTCGTCCACACTCTTACCAGAGCAGTGTGTAATGGAATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACGCTCGTCCACACTCTTACCAGAGCAGTGTGTAATGGAATTGG  341

seq1  CATTCTTGGAAGCTGTTGGGGTTTGTTTTGTTTTGTTTTGTTTTGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGGAAGCTGTTGGGGTTTGTTTTGTTTTGTTTTGTTTTGTTTTG  391

seq1  TTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  441

seq1  CTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCC  491

seq1  CCAGTGCTGAGATTAAAGATGTGTAAACAGACTTCTTAAATGTGGCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTGAGATTAAAGATGTGTAAACAGACTTCTTAAATGTGGCTAAT  541

seq1  GATGGATTGGCAAGTGAGATGGCTCAGCAGCTAAGGCCTGACATCCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATTGGCAAGTGAGATGGCTCAGCAGCTAAGGCCTGACATCCTGAC  591

seq1  CAGGACCACACAGTAGACGCGCAGATTGATTCTCCCTAAGAGCTCCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCACACAGTAGACGCGCAGATTGATTCTCCCTAAGAGCTCCTCTG  641

seq1  CCCTCCACATGTGCAACATGGCATACAAACTCTCTCACAATAAATAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACATGTGCAACATGGCATACAAACTCTCTCACAATAAATAAGTA  691

seq1  ATTAAATAAATGTGATATTTGAAGGCAAACATTGACTTTGTAAGTTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAATGTGATATTTGAAGGCAAACATTGACTTTGTAAGTTAGAG  741

seq1  CCTGAGTGCCTTGCAAGGAATATGGAATACTGCATTTCTCTTGGCCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGCCTTGCAAGGAATATGGAATACTGCATTTCTCTTGGCCTGAA  791

seq1  TTTTTTTAGTTGATATAGTAGTGGAAAGGGAATTCTTTACCATGGCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGTTGATATAGTAGTGGAAAGGGAATTCTTTACCATGGCTTAA  841

seq1  GGATACATAAACTCTCAATGCAGCTATCTTTTTATTGTTGATTATTATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACATAAACTCTCAATGCAGCTATCTTTTTATTGTTGATTATTATAG  891

seq1  CCTCTATTACTCCTAGAAGTTGACCAACAGGGACCTGAGTTTAGGAGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTACTCCTAGAAGTTGACCAACAGGGACCTGAGTTTAGGAGATT  941

seq1  TTTGCCATTCAGCTTTCATATAGTGAATGCTGAGGCCAGCCCTTTGCCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATTCAGCTTTCATATAGTGAATGCTGAGGCCAGCCCTTTGCCTG  991

seq1  CAGGGCCTTTATCATCGAAGAGGATGGGGCCTTACTTTAGGAGTCAAGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTTTATCATCGAAGAGGATGGGGCCTTACTTTAGGAGTCAAGTG  1041

seq1  TGGGGGAGGGGTGAAGATTCTCAGGGATCTCAGGGTGGATTTGAACTTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGGGTGAAGATTCTCAGGGATCTCAGGGTGGATTTGAACTTTG  1091

seq1  ATAGGCACATGATGCTGAATTC  1122
      ||||||||||||||||||||||
seq2  ATAGGCACATGATGCTGAATTC  1113

seq1: chr19_45433547_45434090
seq2: B6Ng01-094O12.g_68_611

seq1  GAATTCCTTATCCTAAACAAAAATGTTATAGTATTTGGTAGAAAAGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATCCTAAACAAAAATGTTATAGTATTTGGTAGAAAAGACTC  50

seq1  ATACTTATTTCGGAATGCCAGGAACCTCTCTCTTGGTTGGATGAGTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATTTCGGAATGCCAGGAACCTCTCTCTTGGTTGGATGAGTCCCT  100

seq1  GGGCAATCTGAACAGCTAATTTCAGCTCAAAGACAGAGCCAAGAAGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATCTGAACAGCTAATTTCAGCTCAAAGACAGAGCCAAGAAGTGTA  150

seq1  TTTGGTGTATATTTGATGTACCCTGATGAATATCATCTAAAGTCCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTATATTTGATGTACCCTGATGAATATCATCTAAAGTCCTCTTC  200

seq1  TTTTTCTGCTCTCCACCCCCAACCCCTGACCCCAGCCTTGGCAGTTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGCTCTCCACCCCCAACCCCTGACCCCAGCCTTGGCAGTTGGCT  250

seq1  TCCCAATAAGCCTTTCTTTCTACCTATGGAATAGCTTGGCGGATTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATAAGCCTTTCTTTCTACCTATGGAATAGCTTGGCGGATTCACTG  300

seq1  TATGAGATTCTGTCTAAAAGAAACAAGCGATAAGTGAACCTTTTGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATTCTGTCTAAAAGAAACAAGCGATAAGTGAACCTTTTGAAAGA  350

seq1  GGATTGGAGCTGGGTGGTGGTAGTGCATAACTTCATCCCAGCACTTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGAGCTGGGTGGTGGTAGTGCATAACTTCATCCCAGCACTTGGGA  400

seq1  GGCAGAGGCAGAGAGAGAGAGGCAGAGAGGCAGAGAGAGAGGCAGAGAGA  450
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTAGAGAGAGAGAGGCAGAGAGGCAGAGAGAGAGGCAGAGAGA  450

seq1  GAGAGGGGCAGAGAGAGAGAGAGAGGCAGAGAGAGAGGCAGAGAAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGCAGAGAGAGAGAGAGAGGCAGAGAGAGAGGCAGAGAAAGAGA  500

seq1  GAGGCAGAGAGAGAGAGAGAGAGAGGCAGGCAGGTGTTTGAGCC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGAGAGAGAGAGAGAGAGGCAGGCAGGTGTTTGAGCC  544