BAC Information

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BAC

Clone NameB6Ng01-095K17
Chromosome19 (Build37)
Map Location 42,166,901 - 42,315,555
singlet/doubletdoublet
Overlap genePi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5
Upstream geneTll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055
Downstream gene4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095K17.bB6Ng01-095K17.g
ACCDH906544DH906545
length1,1401,097
definitionDH906544|Mus musculus domesticus DNA, BAC clone: B6Ng01-095K17, 5' end.DH906545|Mus musculus domesticus DNA, BAC clone: B6Ng01-095K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,166,901 - 42,168,053)(42,314,448 - 42,315,555)
sequence
gaattcactttgtagaccaggctggcctcgaactcagaaatccgcctgcc
tctgcctcccgagtgccgggatcaaaggcgtgcaccaccacgcccggcta
ttttaaaacattttatgtgtcttgatattttgtctttatttatgtgtctt
ttcccagaggatggttgggtccctggaattggagtttcagatgactgtga
gctgtcatgtgggtgttgagaatggaaccccgggtcttttagaagagcgg
cagcttctgagccatctctccagccccttgtgtgctcgttagatgggttg
catgctgctgtgtggaactggtcagggtgggttgtgacttactgctcttg
atagagctcatttacccagagctgcccttgagattacaaagccagagagc
cattctgtcaacagcgctggtataaactggattggaaaaaactttgagaa
cgtccacaaggcccctgattcagctccagcacaagaagccaagtcagcaa
gacttcattcttttttattccagaacagaatgggacttaggtaggaattg
tgttttggcggggggcgagtgggtaatgtgtaacgtgttgcctggacctt
ttgatagccacaggaggaagatttttgtttttttctcatttagaagtatg
tcaggtcaactgggaaatgatctggtgctctgataaatgggagtaacatg
atctgtgagttctgttacctcagttcatcatggaggacaggccgtagggc
tcgggtttggaggctgttgttttggtttgggcggttggttaggatctcag
gctctaagtttcagccactgtcctctgttagaagtaaaaatctacacaca
catttccaaacaggagaaaaaaagattagtaatatgattgccttgccctg
ctccctctgaaagtgtggtctaagactgaggagccacttcctgagtgctt
gtggaggtagactgccaaagaaaacagtttggtatttgtcacctcagaat
ctgcacaaatgtatttaaattatttaatgctaaatatgcctactgtaacg
gcgaatagtccaggtcttatgaatattgactggttctatataccactcgg
aggtggctacggtttgctctcaaggtgaacctgggtacgg
gaattcctcaggaatgagatggtgcataggctgccaggcaccgcccccag
gactcggtgagcctggaagggcgggcgtggaggggctgtgttttgaaata
atcaggaatatctgcaggggaggaggctgtctggagctcctgtgatgctg
tggaaccatcgtcctgaattgactgagatgccttaaggccctaagggcca
accctacgcagtaagaggaggctggttcagcctatccctctgggttccag
aaataattcaaaaataacaacatgcattcctgaacaccggctctgaggta
gggatagagtgagacacaaaatagacaaaaagtcctgccctcctgggcct
tttattctagtgggagagacaagtgaataataataataataataataata
ataataataataataataataataataatgcattaagagggaagaaagct
gagaaaaggcaggaaaggagctgagccgaggcgtgtctgttgcagtataa
gtgtgtctgcttcatctaaagctcattttcaatagcgtggccagaggcaa
aggaaacagcaaatgaaaggccccaaggcaggagcgagttcaaggtgtag
caaagagcccagtgtagctggagctgagcactggggaacagaagcagcgg
acacaaaggtactggaacaagaatgccctggagacttgtgggcagagggg
gacacaacccaccatgtgtctaacaccccctcttgctacagtgttgcgaa
taggtagaagggaaactgggacccctttattcaatagcaacatgcggttt
taatggctccctcgctggaggtacctgcttactgttgctatccaggttaa
atcccacagcccgggggtaagggaggtttattcttcccatttttcagtta
aggaaacggaggctcagggaaggtcagaaaggaaacacatctatccaccc
tcccgatctgaactgtctcacccgtcagtcatgtcctttcagctacccat
ctcaaagaacatctcatctgcccactctctttcgatcgtgggagcttcaa
atctgcctcagcccttagaacgtttttttctataccaggctcctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_42166901_42168053
seq2: B6Ng01-095K17.b_47_1186

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCGAGTGCCGGGATCAAAGGCGTGCACCACCACGCCCGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCCGGGATCAAAGGCGTGCACCACCACGCCCGGCTA  100

seq1  TTTTAAAACATTTTATGTGTCTTGATATTTTGTCTTTATTTATGTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACATTTTATGTGTCTTGATATTTTGTCTTTATTTATGTGTCTT  150

seq1  TTCCCAGAGGATGGTTGGGTCCCTGGAATTGGAGTTTCAGATGACTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAGGATGGTTGGGTCCCTGGAATTGGAGTTTCAGATGACTGTGA  200

seq1  GCTGTCATGTGGGTGTTGAGAATGGAACCCCGGGTCTTTTAGAAGAGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATGTGGGTGTTGAGAATGGAACCCCGGGTCTTTTAGAAGAGCGG  250

seq1  CAGCTTCTGAGCCATCTCTCCAGCCCCTTGTGTGCTCGTTAGATGGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTGAGCCATCTCTCCAGCCCCTTGTGTGCTCGTTAGATGGGTTG  300

seq1  CATGCTGCTGTGTGGAACTGGTCAGGGTGGGTTGTGACTTACTGCTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCTGTGTGGAACTGGTCAGGGTGGGTTGTGACTTACTGCTCTTG  350

seq1  ATAGAGCTCATTTACCCAGAGCTGCCCTTGAGATTACAAAGCCAGAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTCATTTACCCAGAGCTGCCCTTGAGATTACAAAGCCAGAGAGC  400

seq1  CATTCTGTCAACAGCGCTGGTATAAACTGGATTGGAAAAAACTTTGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTCAACAGCGCTGGTATAAACTGGATTGGAAAAAACTTTGAGAA  450

seq1  CGTCCACAAGGCCCCTGATTCAGCTCCAGCACAAGAAGCCAAGTCAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCACAAGGCCCCTGATTCAGCTCCAGCACAAGAAGCCAAGTCAGCAA  500

seq1  GACTTCATTCTTTTTTATTCCAGAACAGAATGGGACTTAGGTAGGAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATTCTTTTTTATTCCAGAACAGAATGGGACTTAGGTAGGAATTG  550

seq1  TGTTTTGGCGGGGGGCGAGTGGGTAATGTGTAACGTGTTGCCTGGACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGCGGGGGGCGAGTGGGTAATGTGTAACGTGTTGCCTGGACCTT  600

seq1  TTGATAGCCACAGGAGGAAGATTTTTGTTTTTTTCTCATTTAGAAGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGCCACAGGAGGAAGATTTTTGTTTTTTTCTCATTTAGAAGTATG  650

seq1  TCAGGTCAACTGGGAAATGATCTGGTGCTCTGATAAATGGGAGTAACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCAACTGGGAAATGATCTGGTGCTCTGATAAATGGGAGTAACATG  700

seq1  ATCTGTGAGTTCTGTTACCTCAGTTCATCATGGAGGACAGGCCGTAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGAGTTCTGTTACCTCAGTTCATCATGGAGGACAGGCCGTAGGGC  750

seq1  TCGGGTTTGGAGGCTGTTGTTTTGGTTTGGGCGG-TGGTTAGGATCTCAG  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCGGGTTTGGAGGCTGTTGTTTTGGTTTGGGCGGTTGGTTAGGATCTCAG  800

seq1  GCTCTAAGTTTCAGGCCACTGTCCTCTGTTAGAAGTAAAAATCTACACAC  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGTTTCA-GCCACTGTCCTCTGTTAGAAGTAAAAATCTACACAC  849

seq1  ACATTTCCAAAACAGGAGAAAAAAAAGATTAGTAATATGATTGCCTTGCC  899
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  ACATTTCC-AAACAGGAG-AAAAAAAGATTAGTAATATGATTGCCTTGCC  897

seq1  CTGCTCCCTCTGAAAGTGTGGTCTAGGACTGAGGAGCCACTTCCTGAGTG  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGCTCCCTCTGAAAGTGTGGTCTAAGACTGAGGAGCCACTTCCTGAGTG  947

seq1  CTTGTGGAGGTTAGACTGCCCACAGAAACAGTTTGGTATTTGTCACCTCA  999
      |||||||||| ||||||||| |   |||||||||||||||||||||||||
seq2  CTTGTGGAGG-TAGACTGCCAAAGAAAACAGTTTGGTATTTGTCACCTCA  996

seq1  GAATCTGCACCAAATGTATTTAAATTTAATTAATGCTTAAATAGTGCTTA  1049
      ||||||||| |||||||||||||| ||| ||||||| |||||| ||| ||
seq2  GAATCTGCA-CAAATGTATTTAAA-TTATTTAATGC-TAAATA-TGCCTA  1042

seq1  CTGT-ACGGCAGAATAGTTCAAGTGCTTTATGAATATTGACTTGTTCCCT  1098
      |||| ||||| ||||||| || ||   ||||||||||||||| ||||  |
seq2  CTGTAACGGC-GAATAGTCCAGGT--CTTATGAATATTGACTGGTTCTAT  1089

seq1  ATAACCACCTCGGAGGTTGCTACTGTTTTGTCTCCACAGGTGACCCTGGG  1148
      || |||| ||||||||| ||||| ||||  ||||   |||||| ||||||
seq2  AT-ACCA-CTCGGAGGTGGCTACGGTTTGCTCTC--AAGGTGAACCTGGG  1135

seq1  TACGG  1153
      |||||
seq2  TACGG  1140

seq1: chr19_42314448_42315555
seq2: B6Ng01-095K17.g_69_1165 (reverse)

seq1  TGCAGGAGCTGGGTATAGGAGAAAAACGTTCTAAGGGCTGAGGCAGCATT  50
      |||||||||  |||||| || ||||||||||||||||||||||||| |||
seq2  TGCAGGAGCCTGGTATA-GAAAAAAACGTTCTAAGGGCTGAGGCAG-ATT  48

seq1  TGTGAAAAGCT-CCACGATCGGAAAGGAGAGTTGGGCAGATGGAGATGTT  99
      ||    ||||| |||||||||  || ||||| ||||||||| ||||||||
seq2  TG----AAGCTCCCACGATCG--AAAGAGAG-TGGGCAGAT-GAGATGTT  90

seq1  CTTTGAGGATGGGGTAGCTGAAAGGGACATGACTGGACGGGTGAGACAGG  149
      |||||| ||| |||||||||||| |||||||||| |||||||||||||| 
seq2  CTTTGA-GAT-GGGTAGCTGAAA-GGACATGACT-GACGGGTGAGACAGT  136

seq1  TCAGATCGGGAAGGGTGGATAGATGTGTTT-CTTTCTGACCTTCCCTGAG  198
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  TCAGATCGGG-AGGGTGGATAGATGTGTTTCCTTTCTGACCTTCCCTGAG  185

seq1  CCTCCGTTTCCTTAACTGAAAAATGGGAAGAATAAACCTCCCTTACCCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGTTTCCTTAACTGAAAAATGGGAAGAATAAACCTCCCTTACCCCC  235

seq1  GGGCTGTGGGATTTAAACTGGATAGCAACAGTAAGCAGGTACCTCCAGCG  298
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGCTGTGGGATTTAACCTGGATAGCAACAGTAAGCAGGTACCTCCAGCG  285

seq1  A-GGAGCCATTAAAACCGCATGTTGCTATTGAATAAAGGGGTCCCAGTTT  347
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCATTAAAACCGCATGTTGCTATTGAATAAAGGGGTCCCAGTTT  335

seq1  -CCTTCTACCTATTCGCAACACTGTAGCAAGAGGGGGTGTTAGACACATG  396
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTACCTATTCGCAACACTGTAGCAAGAGGGGGTGTTAGACACATG  385

seq1  GTGGGTTGTGTCCCCCTCTGCCCACAAGTCTCCAGGGCATTCTTGTTCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTGTGTCCCCCTCTGCCCACAAGTCTCCAGGGCATTCTTGTTCCA  435

seq1  GTACCTTTGTGTCCGCTGCTTCTGTTCCCCAGTGCTCAGCTCCAGCTACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTTGTGTCCGCTGCTTCTGTTCCCCAGTGCTCAGCTCCAGCTACA  485

seq1  CTGGGCTCTTTGCTACACCTTGAACTCGCTCCTGCCTTGGGGCCTTTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTTTGCTACACCTTGAACTCGCTCCTGCCTTGGGGCCTTTCAT  535

seq1  TTGCTGTTTCCTTTGCCTCTGGCCACGCTATTGAAAATGAGCTTTAGATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTTCCTTTGCCTCTGGCCACGCTATTGAAAATGAGCTTTAGATG  585

seq1  AAGCAGACACACTTATACTGCAACAGACACGCCTCGGCTCAGCTCCTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACACACTTATACTGCAACAGACACGCCTCGGCTCAGCTCCTTTC  635

seq1  CTGCCTTTTCTCAGCTTTCTTCCCTCTTAATGCATTATTATTATTATTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTTCTCAGCTTTCTTCCCTCTTAATGCATTATTATTATTATTAT  685

seq1  TATTATTATTATTATTATTATTATTATTATTATTATTCACTTGTCTCTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTATTATTATTATTATTATTCACTTGTCTCTCC  735

seq1  CACTAGAATAAAAGGCCCAGGAGGGCAGGACTTTTTGTCTATTTTGTGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAATAAAAGGCCCAGGAGGGCAGGACTTTTTGTCTATTTTGTGTC  785

seq1  TCACTCTATCCCTACCTCAGAGCCGGTGTTCAGGAATGCATGTTGTTATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTATCCCTACCTCAGAGCCGGTGTTCAGGAATGCATGTTGTTATT  835

seq1  TTTGAATTATTTCTGGAACCCAGAGGGATAGGCTGAACCAGCCTCCTCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTATTTCTGGAACCCAGAGGGATAGGCTGAACCAGCCTCCTCTT  885

seq1  ACTGCGTAGGGTTGGCCCTTAGGGCCTTAAGGCATCTCAGTCAATTCAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGTAGGGTTGGCCCTTAGGGCCTTAAGGCATCTCAGTCAATTCAGG  935

seq1  ACGATGGTTCCACAGCATCACAGGAGCTCCAGACAGCCTCCTCCCCTGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGTTCCACAGCATCACAGGAGCTCCAGACAGCCTCCTCCCCTGCA  985

seq1  GATATTCCTGATTATTTCAAAACACAGCCCCTCCACGCCCGCCCTTCCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCCTGATTATTTCAAAACACAGCCCCTCCACGCCCGCCCTTCCAG  1035

seq1  GCTCACCGAGTCCTGGGGGCGGTGCCTGGCAGCCTATGCACCATCTCATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCGAGTCCTGGGGGCGGTGCCTGGCAGCCTATGCACCATCTCATT  1085

seq1  CCTGAGGAATTC  1108
      ||||||||||||
seq2  CCTGAGGAATTC  1097