BAC Information

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BAC

Clone NameB6Ng01-096C03
Chromosome19 (Build37)9 (Build37)
Map Location 49,054,511 - 49,055,28031,203,474 - 31,204,298
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGm969, LOC670576, Sorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096C03.bB6Ng01-096C03.g
ACCDH906880DH906881
length972826
definitionDH906880|Mus musculus domesticus DNA, BAC clone: B6Ng01-096C03, 5' end.DH906881|Mus musculus domesticus DNA, BAC clone: B6Ng01-096C03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,054,511 - 49,055,280)(31,203,474 - 31,204,298)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttgaatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgactcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgaatataaccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttgtgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacggtaatgtgttcttttaagctttataatct
agaaggcttatacactccatggatataaatgcattcagtatgcaaagaag
cagcagcaataacacggagatttattctactttattttgctcttgcacaa
atttaaattcttggcttctaaa
gaattcttttagatttttggaatacttatgtattttttgggagggggcaa
aaaacagttgtaaacaaaattaggtttaatatgcaactcctggagcctga
aggtaatggtataccatattttcagtgttcatttattgtgtttgggcttc
agtctgtggcacacacgatacagtgcagtatttttcactttgtgatgtcg
tgttggtacttaagaaatttcagattttgatttgtctttttatataatga
atgatcagactttaggtactttttattgtatataatcatgtctgtatata
tttctatgtcatttggagggggagaattgtctttttttctttttttaaac
attgaagagggtaaaacatggacttacagactgtccaaaaggcaagattt
ggtgatgacctggcccctcgtttggtttcaataggatctcttggagatgg
ctcgtaggagtggccctgctcttccctttccacacaagcaccattcaccg
tcccgaagccccgaggagcgggagtggcggacccagcagcgttacttgaa
agtcttgagggaagtgaaggaggaatgtggggacactgctctgtcctctg
atgaggagggtgagtgtccttgggtatttctgggagtctagggttttgga
gccagtggtagccatatatttcccagtaaatgggccctctgtcttgtttg
gtggggtggagaatgggggcttaccagctggtgggtgagttggtgagaca
ctgttgggggagtgactccatgccccttttgatctttgctgtgtggcacc
gagggttagataaacgtcttggaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49054511_49055280
seq2: B6Ng01-096C03.b_46_815 (reverse)

seq1  CTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAG  50

seq1  GGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAC  100

seq1  ATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAA  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAA  150

seq1  AAGGTTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTC  200
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  AAGGTTATATTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTC  200

seq1  TGGACAGATACCAGGTACCAAAGTTGAGTCAGGATCAAGTTGACCATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGATACCAGGTACCAAAGTTGAGTCAGGATCAAGTTGACCATCTA  250

seq1  AACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCC  300

seq1  AGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGA  350

seq1  CCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATA  400

seq1  GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCT  450

seq1  GATACCTAAACCACAGAAAGATTCAACAAAGATAGAGAACTTCAGACCAA  500
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  GATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAA  500

seq1  TTTCTCTTATGAATATTGATGCAAAAATCCTCAATAAAATTCTTGCTAAC  550
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTTGCTAAC  550

seq1  CGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGTTT  600
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTT  600

seq1  TATTCCAGGAATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGGAATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAA  650

seq1  TCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTA  700

seq1  GATGCAGAAAAAGCATTTGACAAGATTCAACACCCATTCATGATAAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAAAAAGCATTTGACAAGATTCAACACCCATTCATGATAAAAGT  750

seq1  TTTGGAAAGATCAGGAATTC  770
      ||||||||||||||||||||
seq2  TTTGGAAAGATCAGGAATTC  770

seq1: chr9_31203474_31204298
seq2: B6Ng01-096C03.g_65_890

seq1  GAATTCTTTTAGATTTTTGGAATACTTATGTATTTTTTGGGAGGGGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGATTTTTGGAATACTTATGTATTTTTTGGGAGGGGGCAA  50

seq1  AAAACAGTTGTAAACAAAATTAGGTTTAATATGCAACTCCTGGAGCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTTGTAAACAAAATTAGGTTTAATATGCAACTCCTGGAGCCTGA  100

seq1  AGGTAATGGTATACCATATTTTCAGTGTTCATTTATTGTGTTTGGGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATGGTATACCATATTTTCAGTGTTCATTTATTGTGTTTGGGCTTC  150

seq1  AGTCTGTGGCACACACGATACAGTGCAGTATTTTTCACTTTGTGATGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGGCACACACGATACAGTGCAGTATTTTTCACTTTGTGATGTCG  200

seq1  TGTTGGTACTTAAGAAATTTCAGATTTTGATTTGTCTTTTTATATAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTACTTAAGAAATTTCAGATTTTGATTTGTCTTTTTATATAATGA  250

seq1  ATGATCAGACTTTAGGTACTTTTTATTGTATATAATCATGTCTGTATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAGACTTTAGGTACTTTTTATTGTATATAATCATGTCTGTATATA  300

seq1  TTTCTATGTCATTTGGAGGGGGAGAATTGTCTTTTTTTCTTTTTTTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGTCATTTGGAGGGGGAGAATTGTCTTTTTTTCTTTTTTTAAAC  350

seq1  ATTGAAGAGGGTAAAACATGGACTTACAGACTGTCCAAAAGGCAAGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAGGGTAAAACATGGACTTACAGACTGTCCAAAAGGCAAGATTT  400

seq1  GGTGATGACCTGGCCCCTCGTTTGGTTTCAATAGGATCTCTTGGAGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGACCTGGCCCCTCGTTTGGTTTCAATAGGATCTCTTGGAGATGG  450

seq1  CTCGTAGGAGTGGCCCTGCTCTTCCCTTTCCACACAAGCACCATTCACCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTAGGAGTGGCCCTGCTCTTCCCTTTCCACACAAGCACCATTCACCG  500

seq1  TCCCGAAGCCCCGAGGAGCGGGAGTGGCGGACCCAGCAGCGTTACTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAAGCCCCGAGGAGCGGGAGTGGCGGACCCAGCAGCGTTACTTGAA  550

seq1  AGTCTTGAGGGAAGTGAAGGAGGAATGTGGGGACACTGCTCTGTCCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGAGGGAAGTGAAGGAGGAATGTGGGGACACTGCTCTGTCCTCTG  600

seq1  ATGAGGAGGGTGAGTGTCCTTGGGTATTTCTGGGAGTCTAGGGTTTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGGGTGAGTGTCCTTGGGTATTTCTGGGAGTCTAGGGTTTTGGA  650

seq1  GCCAGTGGTAGCCATATATTTCCCAGTAAATGGGCCCTCTGTCTTGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGGTAGCCATATATTTCCCAGTAAATGGGCCCTCTGTCTTGTTTG  700

seq1  GTGGGGTGGAGAAT-GGGGCTTACCAGCTGGTGGTTGAGTTGTTGAGACA  749
      |||||||||||||| ||||||||||||||||||| ||||||| |||||||
seq2  GTGGGGTGGAGAATGGGGGCTTACCAGCTGGTGGGTGAGTTGGTGAGACA  750

seq1  CTGTT-GGGGAGTGACTCCATG-CCCTTTTGATTCTTGTGCTGTGTGGCA  797
      ||||| |||||||||||||||| ||||||||| |||| ||||||||||||
seq2  CTGTTGGGGGAGTGACTCCATGCCCCTTTTGA-TCTT-TGCTGTGTGGCA  798

seq1  CCGA-GGTTAGATAGAACGTCTTGGATAG  825
      |||| ||||||||| ||||||||||| ||
seq2  CCGAGGGTTAGATA-AACGTCTTGGAAAG  826