BAC Information

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BAC

Clone NameB6Ng01-097G11
ChromosomeX (Build37)19 (Build37)
Map Location 9,341,892 - 9,342,76922,310,100 - 22,310,616
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSsxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb, EG333452, LOC100042867, Dynlt3
Downstream gene1700054O13Rik, 4930557A04Rik, Sytl5, LOC436194, Srpx, Rpgr, Otc, 4933416E14Rik, Tspan7, EG546265, LOC633354, LOC633361, LOC100042912, Mid1ip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097G11.bB6Ng01-097G11.g
ACCDH907789DH907790
length8811,156
definitionDH907789|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G11, 5' end.DH907790|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,341,892 - 9,342,769)(22,310,100 - 22,310,616)
sequence
gaattcttaattctagcactgcatttgtttagcaaactgtttcccaagat
ttaatttttttccggtgcagttctctatttcaacctctgactagcataca
gtgtggccatatcagtcaattttcttagttggaataatcaaataagctat
gtctactttaagcagatgtctttatttgagggaattatgtggtgggatat
gtatggttccatttatccccactgctaaccatggcttgaagacaagagaa
tttttaatttcattcactaaaggagaatatttccacatccttccattctg
aggctgaccatgtgacttgctttggtcaatgagatgctactgtatagatg
cgatacaggaggacatttaagtaaggacttgcacagttctccttctattc
attatcttgcattgttcaagagaacatgacaagcccagcttggtgaagga
taagagacatgtgctttagaactaagtcatggcatattgcagctaaagct
attctaggttgattggcagctacctgacacccagacattcgtgatctgag
ttgcagctaaccacagcacagatacatgaacattttccaaaggagaagag
aggttcagcctttcttgaaaaagactgacacctagataccttattcagtt
gctttattcaaacattatacaaggttacttgggaccgcaaaaggttccaa
ctaccagagttatattgccattgctgccccatgagggcagacaacccaca
caaatctcaatcactttttgattatggctagcttgctgaatggtgagaca
tgtaattcagaactaagtcattggtattggaactggaagttatcctagta
taggatataggtatatagaagtatagaggta
gaattctcacctgaggaataccgaatggcagagaagcaccagaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcttca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatacccctccttagaagtgggaa
caaaacacccttggaaggagttatagagacaaagttcggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggaccagatgtagctgtctctttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcaaccct
atagttggatcacattatgaactaacagtaccccggagctcttgactctt
agctgcaattgttatcaaaggaatggcctagtcggcatcctgggaagaaa
ggtctactggacacacaacattattatgtccaaagcaggaaccgctcagt
gccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_9341892_9342769
seq2: B6Ng01-097G11.b_44_924

seq1  GAATTCTTAATTCTAGCACTGCATTTGTTTAGCAAACTGTTTCCCAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATTCTAGCACTGCATTTGTTTAGCAAACTGTTTCCCAAGAT  50

seq1  TTAATTTTTTTCCGGTGCAGTTCTCTATTTCAACCTCTGACTAGCATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTTCCGGTGCAGTTCTCTATTTCAACCTCTGACTAGCATACA  100

seq1  GTGTGGCCATATCAGTCAATTTTCTTAGTTGGAATAATCAAATAAGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCCATATCAGTCAATTTTCTTAGTTGGAATAATCAAATAAGCTAT  150

seq1  GTCTACTTTAAGCAGATGTCTTTATTTGAGGGAATTATGTGGTGGGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTTTAAGCAGATGTCTTTATTTGAGGGAATTATGTGGTGGGATAT  200

seq1  GTATGGTTCCATTTATCCCCACTGCTAACCATGGCTTGAAGACAAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTTCCATTTATCCCCACTGCTAACCATGGCTTGAAGACAAGAGAA  250

seq1  TTTTTAATTTCATTCACTAAAGGAGAATATTTCCACATCCTTCCATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTCATTCACTAAAGGAGAATATTTCCACATCCTTCCATTCTG  300

seq1  AGGCTGACCATGTGACTTGCTTTGGTCAATGAGATGCTACTGTATAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACCATGTGACTTGCTTTGGTCAATGAGATGCTACTGTATAGATG  350

seq1  CGATACAGGAGGACATTTAAGTAAGGACTTGCACAGTTCTCCTTCTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATACAGGAGGACATTTAAGTAAGGACTTGCACAGTTCTCCTTCTATTC  400

seq1  ATTATCTTGCATTGTTCAAGAGAACATGACAAGCCCAGCTTGGTGAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTGCATTGTTCAAGAGAACATGACAAGCCCAGCTTGGTGAAGGA  450

seq1  TAAGAGACATGTGCTTTAGAACTAAGTCATGGCATATTGCAGCTAAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGACATGTGCTTTAGAACTAAGTCATGGCATATTGCAGCTAAAGCT  500

seq1  ATTCTAGGTTGATTGGCAGCTACCTGACACCCAGACATTCGTGATCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGTTGATTGGCAGCTACCTGACACCCAGACATTCGTGATCTGAG  550

seq1  TTGCAGCTAACCACAGCACAGATACATGAACATTTTCCAAAGGAGAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCTAACCACAGCACAGATACATGAACATTTTCCAAAGGAGAAGAG  600

seq1  AGGTTCAGCC-TTCTTGAAAAAGACTGACACCTAGATACCTTATTCAGTT  649
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGCCTTTCTTGAAAAAGACTGACACCTAGATACCTTATTCAGTT  650

seq1  GCTTTATTCAAACATTATACAAGGTTACTTGGGACCGCAAAAGGTTCCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTCAAACATTATACAAGGTTACTTGGGACCGCAAAAGGTTCCAA  700

seq1  CTACCAGAGTTATATTGCCATTGCTG-CCCATGAGGGCAGACAACCCACA  748
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTACCAGAGTTATATTGCCATTGCTGCCCCATGAGGGCAGACAACCCACA  750

seq1  CAAATCTCAATCAC-TTTTGATTATGGCTAGCTTGCTGAATGGTGAGACA  797
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAAATCTCAATCACTTTTTGATTATGGCTAGCTTGCTGAATGGTGAGACA  800

seq1  TGTAATTCAGAACTAAGTCATTGGTATTGGAACT-GAAGTTATCCTAAGT  846
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  TGTAATTCAGAACTAAGTCATTGGTATTGGAACTGGAAGTTATCCT-AGT  849

seq1  ATAGGATATAGGTATATAGAGGTATAGAGGTA  878
      |||||||||||||||||||| |||||||||||
seq2  ATAGGATATAGGTATATAGAAGTATAGAGGTA  881

seq1: chr19_22310100_22310616
seq2: B6Ng01-097G11.g_977_1225 (reverse)

seq1  TGTGGCACTGAGCGGTTTTGTTTTCTTAAATGCACATTTAATTACATGCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTAATTAAATGAACAGATTTTAATTATGCCACTTGGTATTTGGGAGGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCACTCTTGCTTTATGTGATAAGAGCTTATTCCTTGTAAGTGGTAAATAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TACTGTTTTTTTTTCCCATTTTTTATTAGGTATTTAGCTCATTTACATTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCAATGCTATACCAAAAGTCCCCCATACCCACGCACCCCCACTCCCCTAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCACCCACTCCCCCTTTTTGGCCCTG-GCGTTCCCCTGTACTGGGGCATA  299
                      | |||| ||| ||| | ||   |  | || ||||
seq2  ----------------TGTGGCACTGAGCGGTTCCTGCT--TTGGACATA  32

seq1  TAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGG  349
        ||  ||| ||||||| | | ||| |||| |||| ||| ||||||||||
seq2  ATAATGTTGTGTGTCCAGTAGACCTTTCTTCCCAG-GAT-GCCGACTAGG  80

seq1  CCA-TCTTTTGAT-ACATATGCAGCT-AGAGTCAAGAGCTCCGGGGTACT  396
      ||| || |||||| |||  ||||||| |||||||||||||||||||||||
seq2  CCATTCCTTTGATAACAATTGCAGCTAAGAGTCAAGAGCTCCGGGGTACT  130

seq1  GGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCT  446
       |||||||||||||| || |||| ||||||||||||||||||||||||||
seq2  -GTTAGTTCATAATG-TGATCCAACTATAGGGTTGCAGATCCCTTTAGCT  178

seq1  CCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCA  228

seq1  TTAGCTGACTGTGAGCATCCA  517
      ||||||||||||| |||||||
seq2  TTAGCTGACTGTGGGCATCCA  249